mRNA_Ecto-sp6_S_contig98.18756.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18756.1
Unique NamemRNA_Ecto-sp6_S_contig98.18756.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18756.1 vs. uniprot
Match: A0A6H5KHI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHI6_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 3.290e-72
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 1 
Query:    4 GDGEAGGQRASNSSTRQVGAPLGSTTSYKVSRWAQWLESICVAGPILSILLVITKCLARLVAGPGSGSGCGLETAWFWSSIGWSAAASGVEFVLATRFTSTCRRYCLVRCCRKRGDY 354
            GDGEA GQR SNSSTRQVGAP GS+TSYKVSRWAQWLESICVAGPILSILLVITKCLARLVAGPGSGSGCGLETAWFWSSIGW AAASGVEFVLATRFTSTCRRYCL+RCCRKRGDY
Sbjct:  143 GDGEAAGQRTSNSSTRQVGAPRGSSTSYKVSRWAQWLESICVAGPILSILLVITKCLARLVAGPGSGSGCGLETAWFWSSIGWGAAASGVEFVLATRFTSTCRRYCLLRCCRKRGDY 259
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BLAST of mRNA_Ecto-sp6_S_contig98.18756.1 vs. uniprot
Match: D7G0W4_ECTSI (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W4_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.780e-46
Identity = 80/85 (94.12%), Postives = 80/85 (94.12%), Query Frame = 3 
Query:   99 MGAMVRVYLCGWSDPLDPSGDNEVPRTTGGGTGIGLRLRLGDCMVLVIHRLECCRLGSGVCSGHSVHVDLPALLSRPLLPETGRL 353
            MGAMVRVYLCG SDP DPSGDNEVPRTTGGGT I LRLRLGDCMVLVIHRLECCRLGSGV SGHSVHVDLPALLSRPLLPETGRL
Sbjct:    1 MGAMVRVYLCGRSDPFDPSGDNEVPRTTGGGTRIRLRLRLGDCMVLVIHRLECCRLGSGVSSGHSVHVDLPALLSRPLLPETGRL 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHI6_9PHAE3.290e-7294.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0W4_ECTSI2.780e-4694.12ABC transmembrane type-1 domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:197771..201008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size354
Hectar predicted targeting categoryother localisation
Exons4
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350600.619829-CDS-Ecto-sp6_S_contig98:197770..1978321682350600.619829-CDS-Ecto-sp6_S_contig98:197770..197832Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 197771..197832 -
1682350600.6303253-CDS-Ecto-sp6_S_contig98:198751..1987951682350600.6303253-CDS-Ecto-sp6_S_contig98:198751..198795Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 198752..198795 -
1682350600.640364-CDS-Ecto-sp6_S_contig98:199696..1998901682350600.640364-CDS-Ecto-sp6_S_contig98:199696..199890Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 199697..199890 -
1682350600.650437-CDS-Ecto-sp6_S_contig98:200954..2010081682350600.650437-CDS-Ecto-sp6_S_contig98:200954..201008Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 200955..201008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18756.1prot_Ecto-sp6_S_contig98.18756.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 197771..201008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18756.1

>prot_Ecto-sp6_S_contig98.18756.1 ID=prot_Ecto-sp6_S_contig98.18756.1|Name=mRNA_Ecto-sp6_S_contig98.18756.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=118bp
GGDGEAGGQRASNSSTRQVGAPLGSTTSYKVSRWAQWLESICVAGPILSI
LLVITKCLARLVAGPGSGSGCGLETAWFWSSIGWSAAASGVEFVLATRFT
STCRRYCLVRCCRKRGDY
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mRNA from alignment at Ecto-sp6_S_contig98:197771..201008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18756.1 ID=mRNA_Ecto-sp6_S_contig98.18756.1|Name=mRNA_Ecto-sp6_S_contig98.18756.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3238bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:197771..201008- (Ectocarpus species6 EcLAC_371)
GGGGGCGACGGGGAAGCGGGTGGGCAGCGAGCGTCTAATTCGTCTACTCG
GCAGGTGCACAAGTGGTTGCTACGGCTGTAGAATTTCAAGCGTTAAGGTT
TATCCCGCGTACTTCGATGCCTTTTGCTGCGTCACACCTTGATTTTTAAA
TTTTTTGTTCGTTGAAGAGTGACATGATGCGTGTGAGATGGCACAATGCT
CTCTGTCTCTATGAGCAAACTACAGCAATAGGGCTGGTGCTGTCCCTTGG
CTGCGAGCTTGTGTTTTTTTTTCTAGTATGTGAGAAACGCATCGCAGCAG
TTGATCAGGATTCACAATGTGCTGTGTCAATACTGCTTCTAGTCTTTGGT
GTGATACATAAGAGACATGTGATCATTTGCTACATGAAGGTACCGCCGTG
TTTTAGGAAACATAAAAACACACACAGAAAGACTTATCGTGGTTGTTGCC
GATAACATCAACGCGAGGGTTGTGCTGTCCCGGCCGCGGGCGGATGGCAT
GTCCTTCGCTGGTTGTCGAAAGTCATGAATGGGAGTGTGTTTGGTATGTG
CACACTGCGCACCCGTCACCTTTGATAATTGTGTCGTCCCTCGCAAACGT
CAAACTCCAACAAGCAATGCGTGGCACCCCCTCTACATGATAGACATGTT
TAAGGCCTTGCGAACCTCCCTCGCAGGCTAGCGAGGTTGCGAGTTCTGCT
ACGTGAAACTTCCCCGCTTACTGCTGTGTCTAGCCACTGTTTTGCTCTGA
AGAACCGCGCACACGCACACACGTTGTCCTTTTCGAAGCGTTCTCCGTTC
TTGGCCACACGGAGACTTAGGCCACACGGAGACTTAGGTCCCCTCATCGG
TCAGCACAGTAACGCGGTCGATGCTGAACCAACAACGACACACACACACG
TGACGCCCCCCCTCACGGGGTCCCAGATCATGCCCTTCACAAGCACTTGC
TGTTTTCAGTGTGGCGCTGAAACTGACGTTTTTTCACTTTGGTCAGCCGT
TTAGAGCGATCGATGCTAGTAGTAAAAGCACATCCGTGGGTGAGGCTGTG
AAGGGGTTTGATCTCCCCACCATGTGGACCCTTGTAAAAGCTGTCGCTGC
TGTGGTTGTGTTTGTCAGGTGGGCGCCCCACTTGGAAGCACCACATCGTA
CAAGGTGTCGAGATGGGCGCAATGGTTAGAGTCTATCTGTGTGGCTGGTC
CGATCCTCTCGATCCTTCTGGTGATAACGAAGTGCCTCGCACGACTGGTG
GCGGGACCGGGATCGGGCTCCGGTTGCGGCTTGGAGACTGCATGGTTTTG
GTCATCCATCGGGTAAGCGACTTCCCAACAACGCCATCGTCGAAGTCACG
TCGCATGTTTTTTCTCTCCTCTGCGCAATATACGCGAACCGATACTTAAA
ACGACCTGGTGGCAGTAGTTCTGTGTCCCCATGAACAGTTGTTTGTTCCA
CAAAACGCAAGCAGCAGCAGCAGCAGCAGCAGTGGCAAGCGCCCCTACAA
ACCAACCTAACGGCAGAGTTTGTAGAAGACATACATATGCATTAAATCAG
AGAAGGACTGCCCGTTAGAGATAGTAGTACCAAAGCCGACGCCGGTATGT
TGAAGTCTTTGTGGGAGAAAACGGCGTTTTTCGGGGGGTCCCCTATGGAG
ACGGACCCACTCAACAGCCGACACACCCCGTTAATCTCATTGCTGCTGGA
GGGTAAGAGCTATCGGTAGCGTCAAGAGCTACACTGCCGTCAAAGCATTT
CGAGAGAACGCGTGGTCTGCTAAACTTACTGAAACACCGAGATGTACCTG
AAAGAACCAATAAAGGCGGCGATGTTCGAAAAATTGGTGTTGGGGCACGA
ATGCTTGATCGAGACTAGCTCCTATCTAATCGTAGGCTATCATAACCGTT
TCCCTTCCTGTTTCGTATCTAGCGCAGGGCTGCCGCCTGTAGCCTTGACT
CCAATTTCCTTTGCAGCAAGCTTTCGAGCCGCACAAGAGCAGCAGCACTT
AGTGCGGGCTCTGGCCCAGCCCTGGCGCAATGGCGCAGCTGCCTGCGTCC
GTCGAGGTCTCGCGGCTTTGGTGCAATGACTTTTAAAGCCGGTATCGCGA
AAACCCCCCCTTGTCTCTCGCCGACTGAACTGAGGTTTGCAACCGCCGTT
CGCTCTCCCCTGCCCGGTCCTGCCGTTGCCTTTGCCGCGTTGGCGTGATC
CTGTGGGCCGCAGCTGGAGTGCTGCCGCCTCGGGAGTGGAGTTTGTTCTG
GCCACTCGTAAGTTTCTCAACGAGCGTTGAAGATTCGATCGCCCCTCTGT
TAAGGACATGCGTGTTTTTCGTTTTGACAGGTGTCCTTAGGATGGGTCCG
TGAGGCCGATACTCTTCCTTGCGTTGTGCATTCTGCGGGGCACCATGCCT
GTGAAAACAAAGGCCTCCCTCTCCGAGGGCGGACTAGGGTGATAGAAAGA
GAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATCGC
CTCCTTGACAATCGGGGGTATCGGTTGTGTCGACCCACAGTAAAGGACCA
ACGCAGCCGAAGAGGAAGAACTCGTCGGTTCTTTCCTCTCTCCAGAGCAC
CTTGGCAAGACACGCTCGTCGTTTCATTGCTCAGCCTGTGCTTTCCTATG
CGGGAACGCGTGCTGCTCCCAGTATAGCCAGACCAGCCTATTGACGGTGT
ACATCTTGACTAATCCCATGTATTTTTCAGCTTGGTATTTCGTAAGTTTC
TGAGTTCCCTCATACTTCACGGTACATACTTTGGTCGTTGGTGGTTTGCG
CTAAGGTCAACACGCCCCATAGATGAGGGAATATCTCTAAATGAATCGGT
AGTTGGGTTTATGAAACTCAACTCTCTAAATGAACAAGTTGGGCCAACCG
ACAACGGAAGCTCCTCTGTTTGCCTTTAGGGGTACGAGAGAGCAGAGGAG
GTGCTGCGTAGGGGCTAGGGCGGTGTTTCCACGCGTAGTCGCGAGCGAAG
CCACCACCGCCCCCAGCATCCGGGCATATGCTCTCGTGGCATCTTGCAGC
CGGCCCAGCAGCAGCAATTCTTCTGCTATCTTGCGACCGGCTCCGCAGCA
GCAAAAACCCTCCCCTCCCGATCCCTCTCCTCACCTCCTCTCTCCCCTCT
ACCCTACCCTACGCTGCCGACAACAGGGTTCACGTCGACCTGCCGGCGCT
ACTGTCTCGTCCGCTGCTGCCGGAAACGGGGCGATTAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:197771..201008-

>mRNA_Ecto-sp6_S_contig98.18756.1 ID=mRNA_Ecto-sp6_S_contig98.18756.1|Name=mRNA_Ecto-sp6_S_contig98.18756.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:197771..201008- (Ectocarpus species6 EcLAC_371)
GGGGGCGACGGGGAAGCGGGTGGGCAGCGAGCGTCTAATTCGTCTACTCG
GCAGGTGGGCGCCCCACTTGGAAGCACCACATCGTACAAGGTGTCGAGAT
GGGCGCAATGGTTAGAGTCTATCTGTGTGGCTGGTCCGATCCTCTCGATC
CTTCTGGTGATAACGAAGTGCCTCGCACGACTGGTGGCGGGACCGGGATC
GGGCTCCGGTTGCGGCTTGGAGACTGCATGGTTTTGGTCATCCATCGGCT
GGAGTGCTGCCGCCTCGGGAGTGGAGTTTGTTCTGGCCACTCGGTTCACG
TCGACCTGCCGGCGCTACTGTCTCGTCCGCTGCTGCCGGAAACGGGGCGA
TTAC
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