prot_Ecto-sp6_S_contig97.18715.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig97.18715.1
Unique Nameprot_Ecto-sp6_S_contig97.18715.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length558
Homology
BLAST of mRNA_Ecto-sp6_S_contig97.18715.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI)

HSP 1 Score: 979 bits (2531), Expect = 0.000e+0
Identity = 550/557 (98.74%), Postives = 551/557 (98.92%), Query Frame = 0
Query:    1 MSSRSRLRPRPRSWCSGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGAVGTAAPSEVVVGVGGAAGPAVLGASARVRKASKQEVRAVTRGLNSITSFAAYGSRDTRGRMTIAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAEHMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLRRRPGRYARQQLTAAARGRVSGRVGGAASVVGRRGRVGRRGGVLAREFG 557
            MSSRSRLRPRPRSWCSGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGAVGTAAPSEVVVGVGGAAGPAVLGASARVRKAS QEVRAVTRGLNSITSFAAYGSRDT GRMTIAEEILLVEEVK+LARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAE MRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXX  KAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLRRRPGRYARQQLTAAARGRVSG VGGAASVVGRRGRVGRRGGVLAREFG
Sbjct:    1 MSSRSRLRPRPRSWCSGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGAVGTAAPSEVVVGVGGAAGPAVLGASARVRKASNQEVRAVTRGLNSITSFAAYGSRDTAGRMTIAEEILLVEEVKILARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAERMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXX--KAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLRRRPGRYARQQLTAAARGRVSGGVGGAASVVGRRGRVGRRGGVLAREFG 555          
BLAST of mRNA_Ecto-sp6_S_contig97.18715.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE)

HSP 1 Score: 691 bits (1783), Expect = 1.220e-245
Identity = 371/395 (93.92%), Postives = 378/395 (95.70%), Query Frame = 0
Query:    1 MSSRSRLRPRPRSWCSGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGAVGTAAPSEVVVGVGGAAGPAVLGASARVRKASKQEVRAVTRGLNSITSFAAYGSRDTRGRMTIAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAEHMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGG 395
            MSSRSRLRPRPRSW  GSARFLLSVAAIVRSGLHIATDAFTLPSGAG PPR+ SASERL LLEVEAETA PARNPQSRPTSDAWCARSVAGNALR ACPGHDR P GRRHRG SSRLGAVGTA PSEVVVG+GGAA PA+LGASAR RKASKQEVRA+TRGLNSITSFAAYGSR+T GRMT+AEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQM+ASARAQERIV ANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAE M VDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGG
Sbjct:    1 MSSRSRLRPRPRSWFVGSARFLLSVAAIVRSGLHIATDAFTLPSGAGRPPRNGSASERL-LLEVEAETAPPARNPQSRPTSDAWCARSVAGNALRCACPGHDRQPGGRRHRGFSSRLGAVGTA-PSEVVVGLGGAARPALLGASARARKASKQEVRAMTRGLNSITSFAAYGSRETPGRMTMAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMMASARAQERIVEANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAERMEVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGG 393          
BLAST of mRNA_Ecto-sp6_S_contig97.18715.1 vs. uniprot
Match: A0A6U5F3I3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5F3I3_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.010e-41
Identity = 117/357 (32.77%), Postives = 179/357 (50.14%), Query Frame = 0
Query:  154 EVRAVTRGLNSITSFAAYGSRDTRGRMTIAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAEHMRVDVERVTRL-MNCPDAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLR 509
            + R V  G + I+S      +     +T AEE  L  E+      ++ RE  E  +G R P+ EEWA S N++  +L  Q+  S  A+ R+V  NVGL+V +A+++      RG   +D++QEG+L ++ AAE F+P+ G++F TYA WW+R R+TR + + +R+IRLP++VH        T   L  ELGR+PT  EIA  M + +++V +L ++     SL+    P +  V DR  L  G                                      +A     PE   E  L  ++L  ++  L+  ER V+ +R+GL   +  T  EVA+R   T+ +VR VE RALNKLR
Sbjct:  128 KARIVVGGESRISSTKFNSFQGRTALLTRAEEATLSNEISKFVSLIRIREDFERAVG-RVPSDEEWAESTNLNIFDLLQQIKRSRDARARLVNGNVGLVVSIAKKYKN----RGLAFADLVQEGNLGLMEAAERFEPKKGFKFCTYASWWIRQRMTRSIAEYSRVIRLPEHVHMSLGIMQKTTKELTVELGRQPTKLEIASRMNIPLKKVEKLSVSSKIVLSLEI---PVSGKVDDRRTLKDG--------------------------------------IASDSPTPEDHTEASLLRAELIAVMEELAPTERDVLMMRFGLDDGTSKTIDEVASRMKVTREKVRSVEARALNKLR 438          
BLAST of mRNA_Ecto-sp6_S_contig97.18715.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 159 bits (402), Expect = 4.890e-39
Identity = 113/331 (34.14%), Postives = 178/331 (53.78%), Query Frame = 0
Query:  180 MTIAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAEHMRVDVERVTRLMNCP-DAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLR 509
            +T  EE+LL   V+LL ++ + RE+LE EL  R PT  EWAA++ + T++L  Q+  S RA+  ++ +N+ L++ +A+R+   T        D+ QEGSL +++A E FDP  G+RFSTYA WW++  V R +  Q+R IRLP ++H+   T    +  L  +LGR+PT +EIAE   + V+++  L     +  S +            R+G +G XXXXXXXX                            + +      PE++A + L +  +D+LL  LS  E+ V+++R+GL      T  E+  R   T+ R+R +E RAL+KLR
Sbjct:  187 LTAQEEVLLARHVQLLLKWEEVRERLEIELA-RPPTYAEWAAAVGVDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNTLSV--QDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSRETMSFEQ---------EIRVGGAGXXXXXXXXXTVILS-----------------------DSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLR 482          
BLAST of mRNA_Ecto-sp6_S_contig97.18715.1 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 7.390e-39
Identity = 108/326 (33.13%), Postives = 171/326 (52.45%), Query Frame = 0
Query:  184 EEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAEHMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLR 509
            EEI+L  +++    Y  TR+ L+  + G EPT EEWA +L +  EEL  ++  +++A+  ++ AN+ L+V +A+R+    ++      D+IQEG+  +++AAE FDP  G++FSTYA WW++  + R +  Q+RIIRLP +VH+F          +  + G+ PT +E+AEH+ V   R+    +   A    +AP    R +  +   S G                          K   G G     V+     P+++A+  + + K+ +LL  LS  E+ VVK R+GLGGA P T  EV      T+ RVR +E RAL+KLR
Sbjct:  198 EEIVLGRQIQKGVSYENTRDHLQL-MRGYEPTEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLS----FQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAP----RTIASKTSTSPGK-------------------------KVEMGQG-----VSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLR 484          
BLAST of mRNA_Ecto-sp6_S_contig97.18715.1 vs. uniprot
Match: D8LNI6_ECTSI (Chloroplast RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 7.420e-39
Identity = 108/326 (33.13%), Postives = 171/326 (52.45%), Query Frame = 0
Query:  184 EEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAEHMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLR 509
            EEI+L  +++    Y  TR+ L+  + G EP+ EEWA +L +  EEL  ++  +++A+  ++ AN+ L+V +A+R+    ++      D+IQEG+  +++AAE FDP  G++FSTYA WW++  + R +  Q+RIIRLP +VH+F          +  + G+ PT DE+AEH+ V   R+    +   A    +AP    R +  +   S G                          K   G G     V+     P+++A+  + + K+ +LL  LS  E+ VVK R+GLGGA P T  EV      T+ RVR +E RAL+KLR
Sbjct:   68 EEIVLGRQIQKGVSYENTRDHLQL-MRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLS----FQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQYYRDAAQATLSMEAP----RNIASKTSTSPGK-------------------------KVEMGQG-----VSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLR 354          
BLAST of mRNA_Ecto-sp6_S_contig97.18715.1 vs. uniprot
Match: A0A6U3P0N0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3P0N0_9STRA)

HSP 1 Score: 158 bits (400), Expect = 9.080e-39
Identity = 114/346 (32.95%), Postives = 171/346 (49.42%), Query Frame = 0
Query:  180 MTIAEEILLVEEVKLLARYLKTREQLEAEL---GGR---EPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRH--------HPATMARGTITS--DVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAEHMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLR 509
            +T  EE+ L   ++ L   ++ R+ L AEL   GG    EP   +WA + ++S  +L   +     A+ R+V ANVGLI+ +ARRH        H      GTI +  D++QEG+L ++ AAE FDP  G+RFSTYA WW+R R+ + +   +R+IRLP +VH+  RT + T   + KE+GR P+  E+A  + + +E++T        F  D +        R+ + L                              A   A    +R+A     PE+ AEV     ++  ++  L   ER V+  R+GL   SP T  + A R G ++ RVR VE RALNKLR
Sbjct:  159 LTREEEVELTSAIRTLKSVVRIRDDLGAELSIDGGATMGEPLEADWAEACSLSVAQLRRTLHFGQEARTRLVSANVGLIMNIARRHYYALKRSVHSGKGGIGTILTLQDMVQEGNLGLMEAAERFDPARGFRFSTYAAWWIRQRILQSIADYSRVIRLPVHVHSTLRTINRTRKEMEKEIGRPPSMPELAHKLEMPLEKLT--------FYADTS--------RNVLSLESSLNND-----------------------AVDDARTLGDRIASDAPTPEEDAEVDSLRQEIRAVIDGLGNKERDVLVSRFGLDDGSPKTVEQTAKRLGISRDRVRNVEARALNKLR 465          
BLAST of mRNA_Ecto-sp6_S_contig97.18715.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 157 bits (396), Expect = 3.030e-38
Identity = 101/327 (30.89%), Postives = 167/327 (51.07%), Query Frame = 0
Query:  184 EEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAEHMRVDVERVTRLMNCP-DAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLR 509
            EE+LL  +V+ +  +   R+ L+ +LG R PT EEWA+S+ +  +EL  +++    A++ ++ +N+ L++ +A+R+      RG   +D+IQEGSL ++RA E FDP  G++FSTY+ WW++  + R +  Q+R IRLP ++H+   T       L   LGR PT +E+AE M + +E++  L  C   A S+D     + R    +   S G                              G     + +      P Q  E  + +  ++KL+  LS  E+ V+++R+GL    P T  E+      T+ RVR +E RAL+KLR
Sbjct:  177 EEVLLARKVQAMIGWEDVRDGLKDQLG-RPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQK----RGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRPAVSMD-----AQRRAMTKKSSSAGKG----------------------------GEVQLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLR 465          
BLAST of mRNA_Ecto-sp6_S_contig97.18715.1 vs. uniprot
Match: Q8S9C9_CYAPA (RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa TaxID=2762 RepID=Q8S9C9_CYAPA)

HSP 1 Score: 153 bits (386), Expect = 2.470e-37
Identity = 112/333 (33.63%), Postives = 164/333 (49.25%), Query Frame = 0
Query:  184 EEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNIS-TEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTIT-SDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAEHMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLF-ESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLRRRPG 513
            +EI L + ++   +  K +E ++ + G  EPT EEWA +  +S  EEL H +     A++R+V AN+  +V +A+++H     RGT++  D+IQEG++ ++RA E FDPR+GYRF+TYA WW+R  +TR +   +R IRLP + H           AL + LGR+PT  EIAEH+ +D  R+ + +    A +      P                                         A  G   R E        P  RAE  L  ES    L   LSE E +V+++R+GL    P T  +V    G T+ RVR +E +AL KLRR PG
Sbjct:  131 DEIELAKRIETFRKLEKVKEHMKWKTGV-EPTDEEWARAAALSDAEELRHMVRVGTLARDRLVRANLRWVVAVAKKYHKQ---RGTMSMQDLIQEGNIGLIRAVEKFDPRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTEAEIAEHVGLDPSRMRKFVESAAAVATVSLDVP---------------------------------INESDNQSATIGDFIRSENEG-----PADRAERELMRESVARTLAKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQIEMKALRKLRR-PG 420          
BLAST of mRNA_Ecto-sp6_S_contig97.18715.1 vs. uniprot
Match: B8C0J0_THAPS (Plastid RNA polymerase sigma factor (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0J0_THAPS)

HSP 1 Score: 148 bits (374), Expect = 1.150e-36
Identity = 109/331 (32.93%), Postives = 155/331 (46.83%), Query Frame = 0
Query:  180 MTIAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAEHMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLRR 510
            +T  EE  L  +VK + +     E L  E+G R P+  EWAA+   S       M+ +  A++R+V  N+ L+V +ARR+H      G    D++QEGSL + RAAE FDP+ G++FSTYA WW++  V R +   +R IRLP +VHN           L +ELGR PT +E+A  M + +E+  +++                R  R+ I L                             +A  G       V      PEQ  + GL  + ++ +L  L EDER V+ LRYG+      T   VA+    TK  VR  E RAL KLRR
Sbjct:    5 LTAKEEYSLGMKVKFMVKCEAVHEGLSVEMG-RSPSIAEWAAAC--SPRLFREMMLTAKEAKQRMVQCNMRLVVSIARRYHGV----GVNVQDLVQEGSLGLARAAEKFDPKKGFKFSTYASWWIQQAVFRSIAYHSRTIRLPVHVHNLLNKVRRARQVLQQELGRTPTNEEMAVEMDMTIEKYNKMI----------------RTTRNAISLE-------------RPKYKNNPKDLGHESEALVGDMVDSSAVIFDEKTPEQNVDHGLLHNDIEYMLGKLGEDERSVLCLRYGINDGITRTVTLVASEMRQTKSWVRSQECRALRKLRR 299          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18715.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLA7_ECTSI0.000e+098.74RNA polymerase sigma factor n=1 Tax=Ectocarpus sil... [more]
A0A6H5KNQ9_9PHAE1.220e-24593.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U5F3I3_9STRA1.010e-4132.77Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1B782_9STRA4.890e-3934.14Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A6H5K3H4_9PHAE7.390e-3933.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNI6_ECTSI7.420e-3933.13Chloroplast RNA-polymerase sigma factor n=1 Tax=Ec... [more]
A0A6U3P0N0_9STRA9.080e-3932.95Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2WX55_9STRA3.030e-3830.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
Q8S9C9_CYAPA2.470e-3733.63RNA polymerase sigma factor n=1 Tax=Cyanophora par... [more]
B8C0J0_THAPS1.150e-3632.93Plastid RNA polymerase sigma factor (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 188..208
NoneNo IPR availableGENE3D1.10.601.10coord: 143..318
e-value: 3.3E-25
score: 91.4
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 178..512
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 21..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..41
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..557
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 461..473
score: 40.55
coord: 296..304
score: 71.18
coord: 272..285
score: 45.94
coord: 482..497
score: 31.41
coord: 497..508
score: 44.95
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 319..369
e-value: 5.1E-9
score: 38.0
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 440..518
e-value: 6.8E-16
score: 59.8
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 248..316
e-value: 3.9E-9
score: 36.2
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 335..368
e-value: 4.2E-6
score: 26.8
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 457..510
e-value: 7.9E-10
score: 38.1
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 240..510
e-value: 1.2E-19
score: 68.4
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 317..368
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 437..513
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 178..317

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:406565..411682 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18715.1mRNA_Ecto-sp6_S_contig97.18715.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig97 406565..413014 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig97.18715.1 ID=prot_Ecto-sp6_S_contig97.18715.1|Name=mRNA_Ecto-sp6_S_contig97.18715.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=558bp
MSSRSRLRPRPRSWCSGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPP
RSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPG
HDRLPRGRRHRGCSSRLGAVGTAAPSEVVVGVGGAAGPAVLGASARVRKA
SKQEVRAVTRGLNSITSFAAYGSRDTRGRMTIAEEILLVEEVKLLARYLK
TREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVG
LIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYA
GWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYD
EIAEHMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGGGKGG
GGGGSGGGGGGGGGAAKAGGGKAAPGAGYRHERVACSMVNPEQRAEVGLF
ESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMV
ETRALNKLRRRPGRYARQQLTAAARGRVSGRVGGAASVVGRRGRVGRRGG
VLAREFG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR036388WH-like_DNA-bd_sf
IPR007627RNA_pol_sigma70_r2
IPR007624RNA_pol_sigma70_r3
IPR007630RNA_pol_sigma70_r4
IPR014284RNA_pol_sigma-70_dom
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2