prot_Ecto-sp6_S_contig95.18601.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig95.18601.1
Unique Name	prot_Ecto-sp6_S_contig95.18601.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	481

Homology

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BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot
Match: D7FMT6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT6_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 3.760e-107
Identity = 232/234 (99.15%), Postives = 232/234 (99.15%), Query Frame = 0

Query:   74 MDDPLDARDAVKGLHGTTLHGSVLRIEISANNKNMLGPRGGYRERKELAYDGRASTRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRXRDYARDSGLRGGPDRYSQKKGPRRTDYRVNLSGLPSGTSWQDIKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRLIEDPKCKARRDENPSPPRKSRRSP 307
            MDDPLDARDAVKGLHGTTLHGSVLRIEISANNKN LGPRGGYRERKELAYDGRASTRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGR RDYARDSGLRGGPDRYSQKKGPRRTDYRVNLSGLPSGTSWQDIKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRLIEDPKCKARRDENPSPPRKSRRSP
Sbjct:    1 MDDPLDARDAVKGLHGTTLHGSVLRIEISANNKNKLGPRGGYRERKELAYDGRASTRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGRDYARDSGLRGGPDRYSQKKGPRRTDYRVNLSGLPSGTSWQDIKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRLIEDPKCKARRDENPSPPRKSRRSP 234

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BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot
Match: A0A6H5KZ57_9PHAE (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ57_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 2.660e-83
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 0

Query:    1 MPRYSRSRSRSPARRSRRYSKSPESPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWVARKPPGFGFVYMDDPLDARDAVKGLHGTTLHGSVLRIEISANNKNMLGPRGGYRERKELAYDGRASTRD 131
            MPRYSRSRSRSPARRSRRYS+SPESPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWVARKPPGFGFVYMDDPLDARDAVKGLHGTTLHGSVLRIEISANNKN LGPRGGYRERKELAYDGRASTRD
Sbjct:    1 MPRYSRSRSRSPARRSRRYSRSPESPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWVARKPPGFGFVYMDDPLDARDAVKGLHGTTLHGSVLRIEISANNKNKLGPRGGYRERKELAYDGRASTRD 131

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BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot
Match: D7FMT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT5_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 6.070e-32
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0

Query:    1 MPRYSRSRSRSPARRSRRYSKSPESPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWV 62
            MPRYSRSRSRSPARRSRRYSKSPE+PPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWV
Sbjct:    1 MPRYSRSRSRSPARRSRRYSKSPEAPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWV 62

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BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot
Match: H3GHB6_PHYRM (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3GHB6_PHYRM)

HSP 1 Score: 94.7 bits (234), Expect = 2.470e-18
Identity = 85/268 (31.72%), Postives = 123/268 (45.90%), Query Frame = 0

Query:   33 IFCGNMNPTSNKHDLEHIFKRYGKIVDIWVARKPPGFGFVYMDDPLDARDAVKGLHGTTLHGSVLRIEISANNKNMLGPRGGYRERKELAYDGRASTRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRXRDYARDSGLRGGPDRYSQKKGP-RRTDYRVNLSGLPSGTSWQDIKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRLIEDPKCKARRDENPSP 299
            ++ G +   +   +++  F RYG + +IWVAR PPGF FV  +DP DA DA++ + G    G  +R+E++         RGG             S RDXXXXXXXXXXXXXXXXX                                           D  R        DR+ + + P +RTD+RV ++ LP    W+++K   R   E  Y  I   G  + EF S  +++  I+KLD+T+F G Y+R+  +    ARR  + SP
Sbjct:    5 VYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELA---------RGG-------------SRRDXXXXXXXXXXXXXXXXX-------------------------------------------DDDRXXXXXXXRDRFERGRNPPQRTDFRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQSKQDLDDAIKKLDDTEFRGSYVRVAAEGGDSARRSRSRSP 207

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BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot
Match: A0A1B6FFP1_9HEMI (RRM domain-containing protein n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6FFP1_9HEMI)

HSP 1 Score: 90.5 bits (223), Expect = 5.810e-18
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 0

Query:   33 IFCGNMNPTSNKHDLEHIFKRYGKIVDIWVARKPPGFGFVYMDDPLDARDAVKGLHGTTLHGSVLRIEISANNKNMLGPRGG 114
            ++ GN+  T++KH+LE  F +YG + ++WVAR PPGF F+  +DP DA DAV+GL GT L G+ +R+E+S+      G  GG
Sbjct:   14 VYVGNLGTTASKHELEGAFTKYGPLRNVWVARNPPGFAFIEFEDPRDAEDAVRGLDGTRLCGTRVRVEMSSGRTRRNGATGG 95

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BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot
Match: A0A6G0XSF8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSF8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.050e-18
Identity = 73/271 (26.94%), Postives = 116/271 (42.80%), Query Frame = 0

Query:   33 IFCGNMNPTSNKHDLEHIFKRYGKIVDIWVARKPPGFGFVYMDDPLDARDAVKGLHGTTLHGSVLRIEISANNKNMLGPRGGYRERKELAYDGRASTRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRXRDYARDSGLRGGPDRYSQKKGPRRTDYRVNLSGLPSGTSWQDIKSLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRLIEDPKCKARRDENPSPPRKS 303
            ++ G +  ++   ++E  F+R+GKIV++W+AR PPGF FV  +DP DA DA+K + G  L G  +R++++         RGG R        GR                                                              R R Y RD    G  DR+      R + ++V ++GLP    W+D+K   RK  +  +  +    + +VE  S  ++E+VIRKLD+T+FDG  + +      KA RD + SP R++
Sbjct:    6 VYVGGIPKSAGNREIEEAFQRFGKIVNVWIARNPPGFAFVDFEDPRDADDAIKDMDGKELLGERIRVQMA---------RGGVRR------GGRGD------------------------------------------------------------RDRSY-RD----GSSDRH------RSSGHKVRITGLPRNADWRDVKDFVRKAGDVSFCDM-DGDDAIVELASKFDLENVIRKLDDTEFDGRRVSI------KAVRDRSQSPRRRA 183

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BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot
Match: A0A077YZC0_TRITR (Splicing factor, arginine:serine rich 6 n=1 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077YZC0_TRITR)

HSP 1 Score: 89.0 bits (219), Expect = 7.870e-18
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 0

Query:   24 ESPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWVARKPPGFGFVYMDDPLDARDAVKGLHGTTLHGSVLRIEISANNKNMLGPRGGY 115
            +S P DC  +F G +   +N+++LE IF++YG++ ++WVAR+PPGF FV  +DP DA D+V+ L GT + G  +R+E+S   +   GP G Y
Sbjct:    5 DSCPPDCK-VFVGGLPEGANRNELEDIFRQYGQLRNVWVARRPPGFAFVEFEDPRDALDSVRNLDGTKMFGVRVRVELSHGRRRNRGPPGRY 95

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BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot
Match: L1JBG9_GUITC (RRM domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBG9_GUITC)

HSP 1 Score: 89.4 bits (220), Expect = 9.980e-18
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 0

Query:   33 IFCGNMNPTSNKHDLEHIFKRYGKIVDIWVARKPPGFGFVYMDDPLDARDAVKGLHGTTLHGSVLRIEISANNK 106
            +F GN+ P +   DL+  F++YG+I D WVARKPPGFGFV+ DD  DARDA + L GT L G+ +R+EIS   +
Sbjct:    2 VFVGNLPPDAEGRDLQDFFRKYGQINDAWVARKPPGFGFVWFDDDRDARDACQDLDGTDLMGNRVRVEISTGRR 75

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BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot
Match: A0A6J1SFY2_FRAOC (RNA-binding protein 1-like isoform X2 n=2 Tax=Thripinae TaxID=153976 RepID=A0A6J1SFY2_FRAOC)

HSP 1 Score: 87.8 bits (216), Expect = 2.460e-17
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 0

Query:   33 IFCGNMNPTSNKHDLEHIFKRYGKIVDIWVARKPPGFGFVYMDDPLDARDAVKGLHGTTLHGSVLRIEISANNKNMLGPRGG 114
            ++ GN+  +++KH+LE  F +YG + ++WVAR PPGF F+  +DP DA DAV+GL GT + G+ +R+E+S       G  GG
Sbjct:   12 VYVGNLGSSASKHELESAFTKYGPLRNVWVARNPPGFAFIEFEDPRDAEDAVRGLDGTRMCGTRVRVEMSNGRSRSRGGAGG 93

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BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot
Match: A0A085NP55_9BILA (RRM domain-containing protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085NP55_9BILA)

HSP 1 Score: 89.0 bits (219), Expect = 2.660e-17
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 0

Query:   24 ESPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWVARKPPGFGFVYMDDPLDARDAVKGLHGTTLHGSVLRIEISANNKNMLGPRGGY 115
            +S P DC  +F G +   +N+++LE IF++YG++ ++WVAR+PPGF FV  +DP DA D+V+ L GT + G  +R+E+S   +   GP G Y
Sbjct:    5 DSCPPDCK-VFVGGLPEGANRNELEDIFRQYGQLRNVWVARRPPGFAFVEFEDPRDALDSVRNLDGTKMFGVRVRVELSHGRRRNRGPPGRY 95

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig95.18601.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FMT6_ECTSI	3.760e-107	99.15	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5KZ57_9PHAE	2.660e-83	98.47	RRM domain-containing protein (Fragment) n=1 Tax=E...	[more]
D7FMT5_ECTSI	6.070e-32	98.39	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
H3GHB6_PHYRM	2.470e-18	31.72	Uncharacterized protein n=3 Tax=Peronosporaceae Ta...	[more]
A0A1B6FFP1_9HEMI	5.810e-18	46.34	RRM domain-containing protein n=1 Tax=Cuerna arida...	[more]
A0A6G0XSF8_9STRA	6.050e-18	26.94	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A077YZC0_TRITR	7.870e-18	43.48	Splicing factor, arginine:serine rich 6 n=1 Tax=Tr...	[more]
L1JBG9_GUITC	9.980e-18	52.70	RRM domain-containing protein n=1 Tax=Guillardia t...	[more]
A0A6J1SFY2_FRAOC	2.460e-17	43.90	RNA-binding protein 1-like isoform X2 n=2 Tax=Thri...	[more]
A0A085NP55_9BILA	2.660e-17	43.48	RRM domain-containing protein n=1 Tax=Trichuris su...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 32..100 e-value: 6.4E-19 score: 78.9 coord: 218..284 e-value: 1.8E-9 score: 47.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 222..282 e-value: 1.5E-10 score: 40.7 coord: 33..98 e-value: 1.3E-13 score: 50.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 217..288 score: 11.247
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 31..104 score: 15.221
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..108 e-value: 2.2E-19 score: 72.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 216..286 e-value: 1.0E-15 score: 59.4
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 194..362
None	No IPR available	PANTHER	PTHR23003:SF30	SERINE/ARGININE-RICH-SPLICING FACTOR 5A-RELATED	coord: 10..188
None	No IPR available	PANTHER	PTHR23003:SF30	SERINE/ARGININE-RICH-SPLICING FACTOR 5A-RELATED	coord: 194..362
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 10..188
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 27..283

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig95	contig	Ecto-sp6_S_contig95:621877..630947 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig95.18601.1	mRNA_Ecto-sp6_S_contig95.18601.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig95 621809..631881 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig95.18601.1 ID=prot_Ecto-sp6_S_contig95.18601.1|Name=mRNA_Ecto-sp6_S_contig95.18601.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=481bp
MPRYSRSRSRSPARRSRRYSKSPESPPSDCANIFCGNMNPTSNKHDLEHI
FKRYGKIVDIWVARKPPGFGFVYMDDPLDARDAVKGLHGTTLHGSVLRIE
ISANNKNMLGPRGGYRERKELAYDGRASTRDRDRHRSRSRSRSLSRDRDR
GRRDRDRDYGHGGRGGRDRDRDHDRDDRDRGRDRDRDGRGRDYARDSGLR
GGPDRYSQKKGPRRTDYRVNLSGLPSGTSWQDIKSLFRKYAEPGYVQIYT
KGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRLIEDPKCKARRDENPSPP
RKSRRSPSPSRSRSRSRSKSRPVKRKRQRSASRSRSRSRYSRSRSRSRSR
SRPKRSRKRSARSRSRSRSRSASRSRSRSGSDAGRRNGKGKGKDSSPADD
HDKESEGEGEEDNASAAENGANGATSNGNHSQEEEGDEGEEEGDEDEPEG
EEDENEVESDAGDDQEEENGAQENGHVSSD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf