prot_Ecto-sp6_S_contig94.18511.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig94.18511.1
Unique Nameprot_Ecto-sp6_S_contig94.18511.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length115
Homology
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BLAST of mRNA_Ecto-sp6_S_contig94.18511.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.860e-33
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0 
Query:   52 ELHVHKQRGSDGAVWAVRVFVVFSDPNETVTAIRKMHGRFFAGRQVQAAAYDHGMFSQGLLDS 114
            +LHVHKQRGSDGAVWAVRVFVVFSDPNETVTAIRKMHGRFFAGRQVQAAAYDHGMFSQGLLDS
Sbjct:  634 QLHVHKQRGSDGAVWAVRVFVVFSDPNETVTAIRKMHGRFFAGRQVQAAAYDHGMFSQGLLDS 696
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18511.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWX1_ECTSI1.860e-3398.41RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 28..103
e-value: 1.2E-9
score: 40.0
IPR040052Splicing factor 45PANTHERPTHR13288SPLICING FACTOR 45 SPF45coord: 54..113
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 67..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig94contigEcto-sp6_S_contig94:85741..87270 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig94.18511.1mRNA_Ecto-sp6_S_contig94.18511.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig94 84641..87328 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig94.18511.1 ID=prot_Ecto-sp6_S_contig94.18511.1|Name=mRNA_Ecto-sp6_S_contig94.18511.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=115bp
MTGETYKTSSPYVSKLWMLRETVMGVTIDSADPCQRRGAKIFAKESKKHA
AELHVHKQRGSDGAVWAVRVFVVFSDPNETVTAIRKMHGRFFAGRQVQAA
AYDHGMFSQGLLDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR040052RBM17
IPR035979RBD_domain_sf