mRNA_Ecto-sp6_S_contig94.18511.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig94.18511.1
Unique NamemRNA_Ecto-sp6_S_contig94.18511.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig94.18511.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 7.410e-29
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 2 
Query:  212 ELHVHKQRGSDGAVWAVRVFVVFSDPNETVTAIRKMHGRFFAGRQVQAAAYDHGMFSQGLLDS 400
            +LHVHKQRGSDGAVWAVRVFVVFSDPNETVTAIRKMHGRFFAGRQVQAAAYDHGMFSQGLLDS
Sbjct:  634 QLHVHKQRGSDGAVWAVRVFVVFSDPNETVTAIRKMHGRFFAGRQVQAAAYDHGMFSQGLLDS 696
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWX1_ECTSI7.410e-2998.41RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig94contigEcto-sp6_S_contig94:84641..87328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score131.3
Seed ortholog evalue2.8e-28
Seed eggNOG ortholog2880.D7FWX1
Preferred namePUF60
Model size1503
KEGG koko:K11798,ko:K12811,ko:K12838
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006376,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007282,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008285,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0042127,GO:0042162,GO:0042752,GO:0042789,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045727,GO:0045893,GO:0045926,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048468,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051301,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
Exons2
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0124@1,KOG0124@2759
EC3.6.4.13
Cds size345
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350574.0041845-UTR-Ecto-sp6_S_contig94:84640..857401682350574.0041845-UTR-Ecto-sp6_S_contig94:84640..85740Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 84641..85740 -
1682350574.035868-UTR-Ecto-sp6_S_contig94:87270..873281682350574.035868-UTR-Ecto-sp6_S_contig94:87270..87328Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 87271..87328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350574.0141244-CDS-Ecto-sp6_S_contig94:85740..859291682350574.0141244-CDS-Ecto-sp6_S_contig94:85740..85929Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 85741..85929 -
1682350574.0239673-CDS-Ecto-sp6_S_contig94:87114..872701682350574.0239673-CDS-Ecto-sp6_S_contig94:87114..87270Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 87115..87270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig94.18511.1prot_Ecto-sp6_S_contig94.18511.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig94 85741..87270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig94.18511.1

>prot_Ecto-sp6_S_contig94.18511.1 ID=prot_Ecto-sp6_S_contig94.18511.1|Name=mRNA_Ecto-sp6_S_contig94.18511.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=115bp
MTGETYKTSSPYVSKLWMLRETVMGVTIDSADPCQRRGAKIFAKESKKHA
AELHVHKQRGSDGAVWAVRVFVVFSDPNETVTAIRKMHGRFFAGRQVQAA
AYDHGMFSQGLLDS*
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mRNA from alignment at Ecto-sp6_S_contig94:84641..87328-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig94.18511.1 ID=mRNA_Ecto-sp6_S_contig94.18511.1|Name=mRNA_Ecto-sp6_S_contig94.18511.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2688bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:84641..87328- (Ectocarpus species6 EcLAC_371)
GTCGTTCTAGCCGCGAAAAGGAACCGTTGGGAAACTACCGTGTTCTGTGT
AGACGGGGATGACGGGTGAAACCTACAAGACGTCGTCGCCGTACGTGAGC
AAGCTCTGGATGCTGCGCGAGACAGTAATGGGCGTCACCATCGACAGCGC
TGATCCTTGCCAACGCCGTGGTGCCAAGATTTTCGCCAAAGAATCCAAGA
AACATGCGGCTGAGGTAATGTACAGGTCTGCCAACAAATGGGCTACAACT
GCCGTTCTAAGTTCGCCATCCTGAATGTGGGAGACGGTGAACCAAAGAAA
ACGTTTGGTGACCACCTCGTGTCCTTCTTTCTTCCTGCCTCGGGTCACAT
TCTTTTTCTTCCCAAAAATACATGCTTTTCGTATTTTTTTTCGTATTTCC
AACTTCCCACATCCACTGTGGAATAAGTAGCGTTGCTCTTTCGTACGTAC
ATGTTTCGAGATGTTGAGATCCGTTCATCTTCCTGTTCCTTGCACTACGT
CTTCGTCGCTAAGATGAACATTTTCAACTGTTCCTTTTGGGGAACTACGT
TGGAGTACTACACGCGTCATGGGCCTGCATGCGATTTCCGTCCTTCGTGT
CTCCTTTTTCTGTTCCAAAATACCATACTTCGTATACATGATTTTTTTTC
TTTCTATTATTTCTTTCGAGTTACTTCAACGACGTGGTCTTCGCTTAGCA
ACGGTTTCCCGAAATCAAGTTTCCCCTTGCGATTTGACGCACAATGACAT
CTACACTTATCAACTGTTCCATGGCGGGCTATTCTTCAATTCCGCTCTTA
TTCATGGGACCCTCATTATTTCTCGTCTTACACGAAACGCATGAGGGGCG
ACACTCATCTTCGCAACGCCCCGTGGGTATCGACGACCCCACCGTTTGTC
TCTCCCCCAAGTCTATCTCGAAAACATCATACAAATCTAATACCATATGA
CTATTTGTGGAACAGCACATGGTGCGCAACAATTTTGCCCTGCCCACAAT
GCCCTCAGGCGCCAACCTCACCCCCTGTCTTTCCCCTCTTCCGGATATTA
CCTTTCTCCTCGACCGCCCAATGGGGGCGGGAGGGGCGATGCTTCACCGT
AAAAGTACGTTGCCGATGATTACACGAGCAAGGGCTGCCTCTCTGTAATG
TAGAGCGCAGTTCCACTGGCTTTCGCCCGTGCGTTTCAGTCGCCCCGCGC
CCCTTCTCTTGTCTAAGTGGAAGGGTGATACCACGAGCCGAGCAACTATT
CCCGTAAGAACTGCACCAGATACATCGTCGTATGTGACGGGCTCCATCTA
CTAAGAAATTGTCAAGAGGGCGACAAACAACACGACACCCTCGTCCTGCC
TTTCCGACCCCGCCCCGCGATGGATCTTGCCGCCTGTTCTGCTTCGCAGC
TCCACGTGCACAAGCAACGAGGATCCGACGGGGCCGTGTGGGCCGTGAGA
GTGTTCGTGGTGTTCTCTGACCCCAACGAGACAGTGACAGCCATTCGGAA
AATGCACGGAAGGTTCTTTGCCGGGCGACAGGTGCAAGCGGCAGCGTACG
ATCACGGGATGTTCTCCCAGGGCTTGCTGGACAGTTGATCTGCGAATCCA
GAAATGAAGTGTTCGAAGTGTTGTGTACGATGTATCATTTATCTTCGCGG
CCGTTGACCAGCTGTTGGTAAGCTCGAGGAAATGAAATGCTCTATGGAGG
CGCCCCGAACGGCGTCGTGCCGTGGTGTGATGGTCGGCTTGGTTTCTCGT
GTTGCTTTGGAACGTGGGCGTATCTCGCCCTCAGTCCCATCTGTGCGAAG
ACCTGCTTGTAGCCAGGCGTGCGCCCTTTGAGGGCACCTGGAAGACTAGA
TCCACGGCAAGCAAGCATTGGTTGTGTCTCTCTTTTGGTGGCAAGGCAAG
CGCTCTCTCCGGTGCCGGGGACGCTCTTGCAAACGCCGGCTGGTGCTTGT
GCCGGCTTGCGTACGGGAAAAGTTCATAACCTTAGAGGGTGCCTGTTAGC
GTGAGCATGTCACGTGCGTTCCATATGCGACTGGTTGGCGTCCTCGGGAG
CGCCCGAGGGTTCGCCTAGGGTTCGCGTGGGCAGAGCGATGTACTCAGAA
GCTTCAGCGACGAACGAAGCAACTCATCAAGTGATGAAGTGCGTGAGACA
AACGACACGTTTGGCGTCAGTGCCGTTGAAGCGAAATAAGAATATTTTTA
TGAAATTGAGTTTTTCGTCCACGCCAACGTTGCATCATGTTTTGCACCCT
GCGGCACGATGACACTTTCAACGTATGAAGTACCACAAGGAACATCTTTC
GCGGCTCGAAAGAGAACCAACCGTGCAATATTGACAACTTGTGTTTCTTT
TTAAATTTTGTGAGGAGTACTGAGTCGTGGGTACGCAAGATACCGGGACA
AGTGTTTGAAACACATACCGAGGAGTACGTAAACGTTTTCGAATATTTTT
GGGTTGATTTGTGTACGACATACCCGAGTTGTAGGTGTAGACGTCTGGGC
GGAAATCCTACCGGACAGTCCTGTGAGTTCTGTGACACTTCCATGCATGA
GGTATGTAGAGGTTTTCTTTTACATTCAACTTACACTCATCACACCATGC
CATCACGTTGACGCCCTACCCACCACGTCAGGACACCATGGAAGAAATAT
AGTGTTCTCCAGGAGCAACGTATGTACCAACCATGCAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:84641..87328-

>mRNA_Ecto-sp6_S_contig94.18511.1 ID=mRNA_Ecto-sp6_S_contig94.18511.1|Name=mRNA_Ecto-sp6_S_contig94.18511.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:84641..87328- (Ectocarpus species6 EcLAC_371)
ATGACGGGTGAAACCTACAAGACGTCGTCGCCGTACGTGAGCAAGCTCTG
GATGCTGCGCGAGACAGTAATGGGCGTCACCATCGACAGCGCTGATCCTT
GCCAACGCCGTGGTGCCAAGATTTTCGCCAAAGAATCCAAGAAACATGCG
GCTGAGCTCCACGTGCACAAGCAACGAGGATCCGACGGGGCCGTGTGGGC
CGTGAGAGTGTTCGTGGTGTTCTCTGACCCCAACGAGACAGTGACAGCCA
TTCGGAAAATGCACGGAAGGTTCTTTGCCGGGCGACAGGTGCAAGCGGCA
GCGTACGATCACGGGATGTTCTCCCAGGGCTTGCTGGACAGTTGA
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