prot_Ecto-sp6_S_contig92.18399.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig92.18399.1
Unique Name	prot_Ecto-sp6_S_contig92.18399.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	217

Homology

[Close]

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: D7FPU8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU8_ECTSI)

HSP 1 Score: 429 bits (1102), Expect = 7.890e-152
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0

Query:    1 MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216
            MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF
Sbjct:    1 MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216

[Close]

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A835ZQ88_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ88_9STRA)

HSP 1 Score: 264 bits (674), Expect = 1.060e-86
Identity = 134/206 (65.05%), Postives = 168/206 (81.55%), Query Frame = 0

Query:   11 TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216
            +LA   AF AP AF G+++A P+ ++ A ++ M+VND+LGADVET GV+DPLG+ KD+A+LFRRR VELKHGR+ MLA  GYL AE +HPLYDGK+  GL A+ ++P+A W+QI+ AI VVELTVGKQD+ENKAPG+LG FG  +NP+P++P  F+ LQLKELKNGRLAM+ IMG MVQE LTGQT + QL SGH+SPFGDGQGAF
Sbjct:   11 SLAGAAAF-AP-AFMGAKVAAPRVSSKAVVS-MSVNDLLGADVETKGVWDPLGFSKDEAALFRRRVVELKHGRICMLATLGYLVAEVYHPLYDGKIPAGLGAISQVPMAGWLQIIAAIGVVELTVGKQDFENKAPGDLG-FGLGFNPFPNDPEKFAALQLKELKNGRLAMMGIMGMMVQEGLTGQTPLAQLASGHISPFGDGQGAF 212

[Close]

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A0G4EVU7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EVU7_VITBC)

HSP 1 Score: 253 bits (646), Expect = 1.720e-82
Identity = 127/214 (59.35%), Postives = 162/214 (75.70%), Query Frame = 0

Query:    3 MEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216
            M++   A  +A  +AFV  +   G       Q+   T  +MAV DM+GADVET GV+DPLG+ KD++SL+R RAVELKHGRVAMLAV GY  AE WHPLYDGK+ PGLKA+ ++P A W+QIL  IA +EL++GKQD+EN+APG+LG FG   NP+ ++PV F+KLQLKE+KNGRLAM+AI G +VQE +TGQT ++QL  GH+SPFGDGQG F
Sbjct:    2 MKLMVFAALIAAASAFVPSAPLRGLD---KLQSRDRTAPRMAVEDMIGADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFVAELWHPLYDGKVEPGLKAISQVPSAGWLQILATIAAIELSIGKQDFENRAPGDLG-FGI--NPFENDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQLREGHISPFGDGQGLF 209

[Close]

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: W7TFG9_9STRA (Light harvesting complex protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFG9_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.340e-79
Identity = 126/206 (61.17%), Postives = 159/206 (77.18%), Query Frame = 0

Query:   11 TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216
            +LA  +AFV P+A        P+ + +  MT+MAVND+LG+DVET GV+DPL + KD+ SL+R RAVELKHGR+AMLAV G   +E +HPLYDGK+SPG+KA+GELP  AW+QIL  I V+ELTVGKQD ENKAPG+LG FG  +NP+ ++P  F++LQLKELKNGRLAML   G ++QE +TGQT  EQ+ + HLSPFGDGQG F
Sbjct:   10 SLAVASAFV-PAA--------PKMSRTRGMTRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLG-FGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPFGDGQGFF 205

[Close]

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 204 bits (518), Expect = 5.760e-63
Identity = 122/212 (57.55%), Postives = 145/212 (68.40%), Query Frame = 0

Query:   11 TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPG------LKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216
            +LA   AF  PSAF G  +ARP   T A +T+M+V DM+G DVET G+FDPLG+ KD+ASLFRRRAVELKHGR+ MLA  G L     H L D   S        L+ L + P+AA +QIL AI ++ELT G QDY NKAPG+LG FG A+ P  D+    ++LQLKELKNGRLAM+ IMG +VQE LT Q  IEQL  GH SPFGDGQG F
Sbjct:   11 SLAGVAAFT-PSAFAGKALARPAARTHA-VTRMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVH-LPDAVFSNPRPIGALLQVLDQRPVAA-IQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKP--DDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPFGDGQGFF 216

[Close]

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.950e-58
Identity = 119/223 (53.36%), Postives = 147/223 (65.92%), Query Frame = 0

Query:    1 MKMEIGALALTLATTTAFV--APSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPG-LKALGEL----PLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216
            MK     LAL L  +TAF+  AP    G  +            +MAVN+M+G+DVET+GVFDPLG  KD+ASL+R R +ELKHGRVAMLA  G L    +H   +   +P  L AL ++    P+A W QI  AI  +ELT+GKQD  N+APG++G FG A+   PD+   F+ LQLKELKNGRLAM+AI+G+ VQEKLTGQ  IEQL  GH SPFGDGQGAF
Sbjct:    1 MKTAFAFLAL-LGVSTAFMPTAPRMTRGRSV------------RMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFW-QIFLAIGAIELTIGKQDTANRAPGDVG-FGAAF--IPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQGAF 206

[Close]

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A7R9U311_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U311_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.650e-56
Identity = 93/170 (54.71%), Postives = 130/170 (76.47%), Query Frame = 0

Query:   44 AVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQ-WHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDG 212
            AV+ ++GADVET+G +DPLG  K++ +L RRR VELKHGRVAMLAV G +  +  +HPL+DGK+  G+ A+ ++P A WVQIL AIA +EL  G  D E+K PG++  FG A+   P++PV + KLQL+ELK+GRLAM+AI+GE+VQE++TGQT ++QL  G+++PF  G
Sbjct:   36 AVDALVGADVETNGFWDPLGLAKNEEALGRRRHVELKHGRVAMLAVLGNIVTDAGYHPLFDGKIPAGIGAISKVPTAGWVQILFAIAAIELRYGGYD-ESKTPGDIAGFGSAF--IPEDPVEYEKLQLRELKHGRLAMIAILGELVQEQITGQTVLQQLVEGNVNPFTPG 202

[Close]

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.020e-54
Identity = 101/190 (53.16%), Postives = 128/190 (67.37%), Query Frame = 0

Query:   32 PQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWH---PLYDGK--LSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216
            P ++ +A +T+MAV DMLGAD+ET GV+DPL   KDD +LF+ R VELKHGRVAMLA  G L     H   P++     L+   + L E P+A W QI  A+   EL++GKQDYENKAPG++  FG    P  ++   + K+QL+ELKNGRLAM+A +G  VQE LTGQ  IEQL  GH+SPFGDG G F
Sbjct:    2 PLRSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFW-QIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDE--WEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188

[Close]

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A835ZDP1_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP1_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.220e-54
Identity = 116/222 (52.25%), Postives = 144/222 (64.86%), Query Frame = 0

Query:    1 MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLK---ALGELPLA---AWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216
            M+  I  L   +A  +AFVAPS+F GS +     +TS+T  KM+V++++GAD ET GV+DP G+ KDDA+L++ R VELKHGRVAMLA  G L  + +  L D   + G K   A  EL  +   A  QI  A   +EL V KQD E  A G+LG FG     YPD    F  LQLKELKNGRLAM+AI+G  VQEKLTGQ  IEQ+ +GH+SPFGDGQGAF
Sbjct:    1 MQTTIAVLLACVAGASAFVAPSSFAGSAL--KVASTSSTSLKMSVDELIGADTETSGVWDPAGFAKDDAALYKYREVELKHGRVAMLATLGVL-VQSFVTLPDPVFANGAKPQTAAWELVTSRPEALAQIFLACGAIELLVLKQDPEKPA-GDLG-FGA----YPDTEEEFETLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQILAGHVSPFGDGQGAF 213

[Close]

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A835ZHX7_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHX7_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.610e-53
Identity = 114/222 (51.35%), Postives = 141/222 (63.51%), Query Frame = 0

Query:    1 MKMEIGALALT-LATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWH---PLYDGKLSP--GLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216
            MK    A AL  + +  AFVAPS+F G+ +     AT     +MAV D++GAD ET G++DPLG+ KD+ SL++ R  ELKHGRVA LA+ G L    +H   P++ G   P   L +L +    A  QI  A+ VVEL + KQD E KAPG+LG FG     YPD      +LQLKELKNGRLA +AI+G  VQEKLTGQ  IEQL +GH SPFGDGQGAF
Sbjct:    1 MKTAFAASALAAIGSAAAFVAPSSFAGTALKAAPVATGPL--RMAVEDLIGADTETGGIWDPLGFAKDEKSLYKYREAELKHGRVAQLAILGVLAQTFFHLPDPVFAGGARPQEALASLIKERPEAIAQIFLAVGVVELFLLKQDPE-KAPGDLG-FGI----YPDTQEELEELQLKELKNGRLAQVAIVGAFVQEKLTGQGPIEQLLAGHTSPFGDGQGAF 214

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPU8_ECTSI	7.890e-152	100.00	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A835ZQ88_9STRA	1.060e-86	65.05	Light harvesting complex protein n=2 Tax=Tribonema...	[more]
A0A0G4EVU7_VITBC	1.720e-82	59.35	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
W7TFG9_9STRA	2.340e-79	61.17	Light harvesting complex protein n=2 Tax=Monodopsi...	[more]
A0A835ZAI4_9STRA	5.760e-63	57.55	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
W7U405_9STRA	2.950e-58	53.36	Light-harvesting protein n=2 Tax=Monodopsidaceae T...	[more]
A0A7R9U311_9STRA	2.650e-56	54.71	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A835ZIK7_9STRA	1.020e-54	53.16	Chlorophyll a/b-binding protein domain-containing ...	[more]
A0A835ZDP1_9STRA	2.220e-54	52.25	Light harvesting complex protein n=2 Tax=Tribonema...	[more]
A0A835ZHX7_9STRA	2.610e-53	51.35	Light harvesting complex protein n=1 Tax=Tribonema...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 56..190 e-value: 3.1E-28 score: 99.3
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 42..212 e-value: 3.1E-35 score: 123.6
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 11..195
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 11..195
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..26
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..216
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..26
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..17 score: 0.577
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 50..210

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig92	contig	Ecto-sp6_S_contig92:202193..205822 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig92.18399.1	mRNA_Ecto-sp6_S_contig92.18399.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig92 202193..205822 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig92.18399.1 ID=prot_Ecto-sp6_S_contig92.18399.1|Name=mRNA_Ecto-sp6_S_contig92.18399.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=217bp
MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLG
ADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHP
LYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGN
FGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQ
LTSGHLSPFGDGQGAF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln