mRNA_Ecto-sp6_S_contig92.18399.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18399.1
Unique NamemRNA_Ecto-sp6_S_contig92.18399.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: D7FPU8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU8_ECTSI)

HSP 1 Score: 429 bits (1102), Expect = 7.890e-152
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
Query:    1 MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 648
            MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF
Sbjct:    1 MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216          
BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A835ZQ88_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ88_9STRA)

HSP 1 Score: 264 bits (674), Expect = 1.060e-86
Identity = 134/206 (65.05%), Postives = 168/206 (81.55%), Query Frame = 1
Query:   31 TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 648
            +LA   AF AP AF G+++A P+ ++ A ++ M+VND+LGADVET GV+DPLG+ KD+A+LFRRR VELKHGR+ MLA  GYL AE +HPLYDGK+  GL A+ ++P+A W+QI+ AI VVELTVGKQD+ENKAPG+LG FG  +NP+P++P  F+ LQLKELKNGRLAM+ IMG MVQE LTGQT + QL SGH+SPFGDGQGAF
Sbjct:   11 SLAGAAAF-AP-AFMGAKVAAPRVSSKAVVS-MSVNDLLGADVETKGVWDPLGFSKDEAALFRRRVVELKHGRICMLATLGYLVAEVYHPLYDGKIPAGLGAISQVPMAGWLQIIAAIGVVELTVGKQDFENKAPGDLG-FGLGFNPFPNDPEKFAALQLKELKNGRLAMMGIMGMMVQEGLTGQTPLAQLASGHISPFGDGQGAF 212          
BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A0G4EVU7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EVU7_VITBC)

HSP 1 Score: 253 bits (646), Expect = 1.720e-82
Identity = 127/214 (59.35%), Postives = 162/214 (75.70%), Query Frame = 1
Query:    7 MEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 648
            M++   A  +A  +AFV  +   G       Q+   T  +MAV DM+GADVET GV+DPLG+ KD++SL+R RAVELKHGRVAMLAV GY  AE WHPLYDGK+ PGLKA+ ++P A W+QIL  IA +EL++GKQD+EN+APG+LG FG   NP+ ++PV F+KLQLKE+KNGRLAM+AI G +VQE +TGQT ++QL  GH+SPFGDGQG F
Sbjct:    2 MKLMVFAALIAAASAFVPSAPLRGLD---KLQSRDRTAPRMAVEDMIGADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFVAELWHPLYDGKVEPGLKAISQVPSAGWLQILATIAAIELSIGKQDFENRAPGDLG-FGI--NPFENDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQLREGHISPFGDGQGLF 209          
BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: W7TFG9_9STRA (Light harvesting complex protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFG9_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.340e-79
Identity = 126/206 (61.17%), Postives = 159/206 (77.18%), Query Frame = 1
Query:   31 TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 648
            +LA  +AFV P+A        P+ + +  MT+MAVND+LG+DVET GV+DPL + KD+ SL+R RAVELKHGR+AMLAV G   +E +HPLYDGK+SPG+KA+GELP  AW+QIL  I V+ELTVGKQD ENKAPG+LG FG  +NP+ ++P  F++LQLKELKNGRLAML   G ++QE +TGQT  EQ+ + HLSPFGDGQG F
Sbjct:   10 SLAVASAFV-PAA--------PKMSRTRGMTRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLG-FGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPFGDGQGFF 205          
BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 204 bits (518), Expect = 5.760e-63
Identity = 122/212 (57.55%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   31 TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPG------LKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 648
            +LA   AF  PSAF G  +ARP   T A +T+M+V DM+G DVET G+FDPLG+ KD+ASLFRRRAVELKHGR+ MLA  G L     H L D   S        L+ L + P+AA +QIL AI ++ELT G QDY NKAPG+LG FG A+ P  D+    ++LQLKELKNGRLAM+ IMG +VQE LT Q  IEQL  GH SPFGDGQG F
Sbjct:   11 SLAGVAAFT-PSAFAGKALARPAARTHA-VTRMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVH-LPDAVFSNPRPIGALLQVLDQRPVAA-IQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKP--DDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPFGDGQGFF 216          
BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.950e-58
Identity = 119/223 (53.36%), Postives = 147/223 (65.92%), Query Frame = 1
Query:    1 MKMEIGALALTLATTTAFV--APSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPG-LKALGEL----PLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 648
            MK     LAL L  +TAF+  AP    G  +            +MAVN+M+G+DVET+GVFDPLG  KD+ASL+R R +ELKHGRVAMLA  G L    +H   +   +P  L AL ++    P+A W QI  AI  +ELT+GKQD  N+APG++G FG A+   PD+   F+ LQLKELKNGRLAM+AI+G+ VQEKLTGQ  IEQL  GH SPFGDGQGAF
Sbjct:    1 MKTAFAFLAL-LGVSTAFMPTAPRMTRGRSV------------RMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFW-QIFLAIGAIELTIGKQDTANRAPGDVG-FGAAF--IPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQGAF 206          
BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A7R9U311_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U311_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.650e-56
Identity = 93/170 (54.71%), Postives = 130/170 (76.47%), Query Frame = 1
Query:  130 AVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQ-WHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDG 636
            AV+ ++GADVET+G +DPLG  K++ +L RRR VELKHGRVAMLAV G +  +  +HPL+DGK+  G+ A+ ++P A WVQIL AIA +EL  G  D E+K PG++  FG A+   P++PV + KLQL+ELK+GRLAM+AI+GE+VQE++TGQT ++QL  G+++PF  G
Sbjct:   36 AVDALVGADVETNGFWDPLGLAKNEEALGRRRHVELKHGRVAMLAVLGNIVTDAGYHPLFDGKIPAGIGAISKVPTAGWVQILFAIAAIELRYGGYD-ESKTPGDIAGFGSAF--IPEDPVEYEKLQLRELKHGRLAMIAILGELVQEQITGQTVLQQLVEGNVNPFTPG 202          
BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.020e-54
Identity = 101/190 (53.16%), Postives = 128/190 (67.37%), Query Frame = 1
Query:   94 PQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWH---PLYDGK--LSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 648
            P ++ +A +T+MAV DMLGAD+ET GV+DPL   KDD +LF+ R VELKHGRVAMLA  G L     H   P++     L+   + L E P+A W QI  A+   EL++GKQDYENKAPG++  FG    P  ++   + K+QL+ELKNGRLAM+A +G  VQE LTGQ  IEQL  GH+SPFGDG G F
Sbjct:    2 PLRSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFW-QIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDE--WEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188          
BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A835ZDP1_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP1_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.220e-54
Identity = 116/222 (52.25%), Postives = 144/222 (64.86%), Query Frame = 1
Query:    1 MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLK---ALGELPLA---AWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 648
            M+  I  L   +A  +AFVAPS+F GS +     +TS+T  KM+V++++GAD ET GV+DP G+ KDDA+L++ R VELKHGRVAMLA  G L  + +  L D   + G K   A  EL  +   A  QI  A   +EL V KQD E  A G+LG FG     YPD    F  LQLKELKNGRLAM+AI+G  VQEKLTGQ  IEQ+ +GH+SPFGDGQGAF
Sbjct:    1 MQTTIAVLLACVAGASAFVAPSSFAGSAL--KVASTSSTSLKMSVDELIGADTETSGVWDPAGFAKDDAALYKYREVELKHGRVAMLATLGVL-VQSFVTLPDPVFANGAKPQTAAWELVTSRPEALAQIFLACGAIELLVLKQDPEKPA-GDLG-FGA----YPDTEEEFETLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQILAGHVSPFGDGQGAF 213          
BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Match: A0A835ZHX7_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHX7_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.610e-53
Identity = 114/222 (51.35%), Postives = 141/222 (63.51%), Query Frame = 1
Query:    1 MKMEIGALALT-LATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWH---PLYDGKLSP--GLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 648
            MK    A AL  + +  AFVAPS+F G+ +     AT     +MAV D++GAD ET G++DPLG+ KD+ SL++ R  ELKHGRVA LA+ G L    +H   P++ G   P   L +L +    A  QI  A+ VVEL + KQD E KAPG+LG FG     YPD      +LQLKELKNGRLA +AI+G  VQEKLTGQ  IEQL +GH SPFGDGQGAF
Sbjct:    1 MKTAFAASALAAIGSAAAFVAPSSFAGTALKAAPVATGPL--RMAVEDLIGADTETGGIWDPLGFAKDEKSLYKYREAELKHGRVAQLAILGVLAQTFFHLPDPVFAGGARPQEALASLIKERPEAIAQIFLAVGVVELFLLKQDPE-KAPGDLG-FGI----YPDTQEELEELQLKELKNGRLAQVAIVGAFVQEKLTGQGPIEQLLAGHTSPFGDGQGAF 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPU8_ECTSI7.890e-152100.00Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835ZQ88_9STRA1.060e-8665.05Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A0G4EVU7_VITBC1.720e-8259.35Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
W7TFG9_9STRA2.340e-7961.17Light harvesting complex protein n=2 Tax=Monodopsi... [more]
A0A835ZAI4_9STRA5.760e-6357.55Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7U405_9STRA2.950e-5853.36Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A7R9U311_9STRA2.650e-5654.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835ZIK7_9STRA1.020e-5453.16Chlorophyll a/b-binding protein domain-containing ... [more]
A0A835ZDP1_9STRA2.220e-5452.25Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A835ZHX7_9STRA2.610e-5351.35Light harvesting complex protein n=1 Tax=Tribonema... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:202193..205822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score429.5
Seed ortholog evalue9.4e-118
Seed eggNOG ortholog2880.D7FPU8
Model size651
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
Exons5
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S44M@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-18_001740.1
Cds size651
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350560.0674264-CDS-Ecto-sp6_S_contig92:202192..2022901682350560.0674264-CDS-Ecto-sp6_S_contig92:202192..202290Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 202193..202290 -
1682350560.0769603-CDS-Ecto-sp6_S_contig92:203207..2033311682350560.0769603-CDS-Ecto-sp6_S_contig92:203207..203331Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 203208..203331 -
1682350560.0848694-CDS-Ecto-sp6_S_contig92:203650..2037771682350560.0848694-CDS-Ecto-sp6_S_contig92:203650..203777Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 203651..203777 -
1682350560.0938969-CDS-Ecto-sp6_S_contig92:204732..2049221682350560.0938969-CDS-Ecto-sp6_S_contig92:204732..204922Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 204733..204922 -
1682350560.1039073-CDS-Ecto-sp6_S_contig92:205710..2058221682350560.1039073-CDS-Ecto-sp6_S_contig92:205710..205822Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 205711..205822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18399.1prot_Ecto-sp6_S_contig92.18399.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 202193..205822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18399.1

>prot_Ecto-sp6_S_contig92.18399.1 ID=prot_Ecto-sp6_S_contig92.18399.1|Name=mRNA_Ecto-sp6_S_contig92.18399.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=217bp
MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLG
ADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHP
LYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGN
FGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQ
LTSGHLSPFGDGQGAF*
back to top

mRNA from alignment at Ecto-sp6_S_contig92:202193..205822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18399.1 ID=mRNA_Ecto-sp6_S_contig92.18399.1|Name=mRNA_Ecto-sp6_S_contig92.18399.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3630bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:202193..205822- (Ectocarpus species6 EcLAC_371)
ATGAAGATGGAAATCGGTGCCTTGGCTCTTACCCTCGCGACCACGACGGC GTTCGTGGCGCCGTCCGCGTTCCACGGTTCTCAAATCGCGCGGCCGCAGC AGGCGACATCTGGTGAGCCTTTCTCCATCTCACAGCGGCATCGCATACAA GTGTTGTCCTAGCAGCGGCTGTGTCATGTTTCGCGATCTCGCGATGCCGG CTTCCAAGTGCCCTCGTGCGCGACGGGCAGACTGAGATTTATCCTGTTAC CCCTGCTAGTGCTGCTGTAGTGTGAAGATTGAAGACGAGCTGCCGTTCGT CCCAAGCGGGTTGTGTACGTGGTGAAACATGCCCGTCTGACCTCTGACTC AAGTTGACTTGTGTCCGGATCATGAAGACTAGCAACAAATGCCCCCAGAT GCGGACTCAAGAGATCAGGTTGTGTACCCAGTGCACGATCATAGGCTTCG TCCATCGGCCGTTTCTTCTTTCTGCTGTTGGAAGTCCGTGTACGAGAACA ATGACCCTGTGATATATGGCGTCACCAACGAGTCCTGTGAAAACCAAGAA AAACCAAGAAATCACGCATCTGCACACATCTGAGGGTCCCCTTTCCCCGC TGACTCGACCCTCGTCCATCTCTGGTTTCCTCTCTTCTCTCATCTATTTT CGCTGGGCAACATCATGCTCGACGCCGTTGAACACTTAGTGCCACGAACT CATTCGTAACCCAATCGCGCATTGGCATTTTTCAGTCCTTTCTGATGTCG TGTGTACTTCGTACTACAGGGGTGGATCGATCGCATGCAGATGAAAAATC CAGCAGTTGAACTGAATCGTTCCTTCCCTCACAACATAAGGCTTTTGCCC GATGCATGCATGCACGTATGCGTGTCCTCGAAATCAACGACTTCATTCAG CCACTATGACCAAGATGGCGGTGAACGACATGCTGGGCGCGGATGTGGAG ACGGACGGTGTGTTTGACCCCCTCGGATACGGCAAGGACGATGCATCGCT CTTCAGGCGCCGGGCGGTGGAGCTCAAGCACGGACGTGTCGCTATGTTGG CCGTCACCGGCTATCTCTTCGCGGAGCAGTGGCACCCCCTGTAAGTTAGT GGTACCAGACAGCAGTGGTTTTGGCCGCTCCACCCAGGCGCATTGGGTGG GTTTGGGGGAGGGGTAGACTGGAAGCAGCAAGACGATCACGACGATACGA ATGCACTACTCTTTGTGTTTACACATGAGCTTGCATTATGTCGTGAAGGA ATGGTGTGGGTGGTGCTTTGTACTTGGCAAATGTATCACTTGTAACCTTT CTGCGTTAAGTGACACTGTCTCCATCAACGTTGGCTGCCTCGAATGCTGG CCAAGATCGCCTTATGTGTGCATGAAGAGCGTCGCTGGTGGTTCGGTTGT ACTGGCAGAGGCAAATAAATAGGCCGTTCTGCTCAAGCCAAAGCGACACA TGATCACCGCACTTACTGCTGTTGTTGCCGAGGTCGACCGAAGCTCCAAG TCGTGCGCGACTCTGGAAAGATGCGCCGATGTCTCATCCAGCAAGAGGTT CACGTCCGCCAATGAGGAACGTGTCACTCGGCCGCTCGGCCTTGCCGTTT TACTGTTTCAATTGCCCATCGCGGAAGCAGGGCAGCTGTGAATGTCGGAA TAGCAGCAAACGTTTGCCAATGCTGTCTTGTTGTATTGCCCTGCCAATGT TCTCGCTCACACAATTCTCGCTACCGTATGCTTGAGCATTTTTTTTTATA TTGCCCGTATTTTTTTGGTCCCCCAACACCCCACACTTTTCGGCTACAGC AGTACATTCGAAAACTCGGTGGGCGAGAGAGCCTGACCTCAAAGCACGCC CTCGGTTTTGCGCTTAATCAGCAACACGGGCATGCGCTTTACACATCTTA CCTTACGGTATCGTCGATTCATGTGAACAAATGGTTTTCAAGGGCGTCGG ACGCAAACGATGGAAGTCCACACCGTGATAGGTTTCCTGATTGTGTTGTT CACGTTTTCGCTCTCCCTCTCCTTCTCTTGTTGCTGTCTTGTCAGGTACG ACGGTAAGCTGTCCCCGGGCTTGAAGGCCCTCGGAGAGCTCCCGTTGGCA GCGTGGGTTCAGATTTTGGGAGCGATCGCCGTTGTGGAGCTGACTGTGGG GAAGCAGGACTACGAGAACAAGGTGCACTTGGTTTGCGAAGTGGTGATGT TGCTGCTGGTAGTCTGGTATTTTCGTATTCCCTGTCGCTCACATCTTTGT GATGCCAATGCTTGCGAGAGCGACCAACTGCTTTACTCCTTGGTTGTTCT ATTGTTCCATGCTTGTCCATTTGAGGAGGTCTTTCGTGGTGCAGTCGACG TCCCAGGTCGACGTTTTTTTTGTGTCACCAATGACGCTCGTACCATCCGC AGGTGTGTGGGTGAAACACGCCGCGTTCAAACTCCTTTCCTTTCCCCGTG TCGTGTCCGACATTCCCTTCGCTGTTTGTCTCTTTTCGCAGGCGCCGGGA GAGCTCGGCAACTTCGGCCAGGCATGGAACCCCTACCCCGACAACCCGGT CGCTTTCTCCAAGCTTCAGCTCAAGGAGCTCAAGAACGGGCGCCTTGCGA TGCTCGCGATCATGGGTAAGTTCTTGAGGTCGTCATGATCGTTGTTCTTG TTGAGTGGCCCTCTCGCCCGCACAGGTTACGTCGGGTGTCAACCGTCAAG ACAGCCTGCTCCCGCCCGTATTCCTGCGGAAGTATTTACCAGACGACATG TGCACATGGTCGCGAGACCAGCGGACGAGTACACGACATCAAAAATCCTC ATGCACATTGCGAATGAACCCAACGAAGACCGGGAACATTGTCGCTCCAA CACATGGCCGTTGAAGAGTTGACCGTGGGGCACGTGTTCGGTCAGAAAGG CGCAGCGTCATAACGTTTGCGCGATTGTTGCCGTGTTTATGCGGTAAGAG ATGGCCTCGCTTGAATAGCATCAGCAACGATTTTGTTGACGCGACTAGAC AGACGCGCTTGTTCATGGGGCACTGGGTGTCTCATTTTTGCGGGTGGAAA GGGTGCCAATCTTGTGACGGGCTCGTGCAGCACGCGCTGCGTTCGTTAAG TGTGTCGTCGAGTAACACTACGCAACCTACATCATGGCGAATTCTCCAAA GCTGACGTGGAACTTGCTTCCCAACCACCAAAACTTAGACTAATCGTCGG GCGCGTGGGCGTGATTCTAGCAATTGTACAAGTACTCTTGGGTGTCTTGC TGTCAACACAAGAAATGTACAACGTGTTTTCTCGTTCATGGCGTAGACGA CCAGAGCTGTGAACGGTGGAGACTAAGCTTTCACCACAACATTTTTTGGA CCTCGCGCTCGGCACCTTGCTCGAAGTTTGTCCACAATATGACCCCCGTG ACGGAGAAAAATCGTCCGTGCAACACGACTGCGGTAGTTGTTGGCCCAAC CACACTGTCGCCTTGCCTTGAGCTGCTGATGTGGCTGATTTCGTGTCATT TCCTCTGTCTTCTTGTTTTTTCGGATTCTCAGGCGAGATGGTGCAGGAGA AGCTCACCGGCCAGACCGCAATCGAACAGCTCACGTCGGGACACCTTAGC CCGTTCGGCGACGGCCAGGGCGCCTTTTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:202193..205822-

>mRNA_Ecto-sp6_S_contig92.18399.1 ID=mRNA_Ecto-sp6_S_contig92.18399.1|Name=mRNA_Ecto-sp6_S_contig92.18399.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:202193..205822- (Ectocarpus species6 EcLAC_371)
ATGAAGATGGAAATCGGTGCCTTGGCTCTTACCCTCGCGACCACGACGGC
GTTCGTGGCGCCGTCCGCGTTCCACGGTTCTCAAATCGCGCGGCCGCAGC
AGGCGACATCTGCCACTATGACCAAGATGGCGGTGAACGACATGCTGGGC
GCGGATGTGGAGACGGACGGTGTGTTTGACCCCCTCGGATACGGCAAGGA
CGATGCATCGCTCTTCAGGCGCCGGGCGGTGGAGCTCAAGCACGGACGTG
TCGCTATGTTGGCCGTCACCGGCTATCTCTTCGCGGAGCAGTGGCACCCC
CTGTACGACGGTAAGCTGTCCCCGGGCTTGAAGGCCCTCGGAGAGCTCCC
GTTGGCAGCGTGGGTTCAGATTTTGGGAGCGATCGCCGTTGTGGAGCTGA
CTGTGGGGAAGCAGGACTACGAGAACAAGGCGCCGGGAGAGCTCGGCAAC
TTCGGCCAGGCATGGAACCCCTACCCCGACAACCCGGTCGCTTTCTCCAA
GCTTCAGCTCAAGGAGCTCAAGAACGGGCGCCTTGCGATGCTCGCGATCA
TGGGCGAGATGGTGCAGGAGAAGCTCACCGGCCAGACCGCAATCGAACAG
CTCACGTCGGGACACCTTAGCCCGTTCGGCGACGGCCAGGGCGCCTTTTA
A
back to top