prot_Ecto-sp6_S_contig90.18336.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig90.18336.1
Unique Name	prot_Ecto-sp6_S_contig90.18336.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	163

Homology

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BLAST of mRNA_Ecto-sp6_S_contig90.18336.1 vs. uniprot
Match: A0A6H5K154_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K154_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 1.200e-67
Identity = 126/162 (77.78%), Postives = 130/162 (80.25%), Query Frame = 0

Query:    1 MAPPAGRGGGGARGHXXXXXXXXXXXXXXXXXXXXPAGQFFGGPGARTGYGGGHGGPRGPLGTTCCCWVVLCTISFVIVVSVGIMLIESLDECTTSTXXXXXXXXIAYEVALAVGXXXXXXXXXXXXMRPSEEGYQPIDGSASERQYMLATEAPLPQYVHGN 162
            MAPPAGRGGGGARGH              XXXXX PAGQFFGGPG R  YGGGHGG RGPLGTTCCCWVVLCT +FVIVV+VGIMLIESL+EC+TST        IAYEV LAVG   XXXXXXXXXMRPSEEGYQPIDGSASERQYMLATEAPLPQYVHGN
Sbjct:    1 MAPPAGRGGGGARGHRAPGGFRGGAPRPPXXXXXAPAGQFFGGPGVRARYGGGHGGTRGPLGTTCCCWVVLCTAAFVIVVTVGIMLIESLEECSTSTSDSENSNCIAYEVGLAVGAGVXXXXXXXXXMRPSEEGYQPIDGSASERQYMLATEAPLPQYVHGN 162

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig90.18336.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig90.18336.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5K154_9PHAE	1.200e-67	77.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 106..128
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..64
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 129..162
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 87..105
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 65..86
None	No IPR available	TMHMM	TMhelix		coord: 68..90
None	No IPR available	TMHMM	TMhelix		coord: 105..127

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig90	contig	Ecto-sp6_S_contig90:330368..332555 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig90.18336.1	mRNA_Ecto-sp6_S_contig90.18336.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig90 327819..334136 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig90.18336.1 ID=prot_Ecto-sp6_S_contig90.18336.1|Name=mRNA_Ecto-sp6_S_contig90.18336.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=163bp
MAPPAGRGGGGARGHGAPGGFRGGAPRPPPPRPPAPAGQFFGGPGARTGY
GGGHGGPRGPLGTTCCCWVVLCTISFVIVVSVGIMLIESLDECTTSTSDS
DNSNCIAYEVALAVGAGVVVLCCCCCCMRPSEEGYQPIDGSASERQYMLA
TEAPLPQYVHGN*