mRNA_Ecto-sp6_S_contig90.18336.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig90.18336.1
Unique NamemRNA_Ecto-sp6_S_contig90.18336.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig90.18336.1 vs. uniprot
Match: A0A6H5K154_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K154_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 3.840e-61
Identity = 126/162 (77.78%), Postives = 130/162 (80.25%), Query Frame = 1 
Query:  340 MAPPAGRGGGGARGHXXXXXXXXXXXXXXXXXXXXPAGQFFGGPGARTGYGGGHGGPRGPLGTTCCCWVVLCTISFVIVVSVGIMLIESLDECTTSTXXXXXXXXIAYEVALAVGXXXXXXXXXXXXMRPSEEGYQPIDGSASERQYMLATEAPLPQYVHGN 825
            MAPPAGRGGGGARGH              XXXXX PAGQFFGGPG R  YGGGHGG RGPLGTTCCCWVVLCT +FVIVV+VGIMLIESL+EC+TST        IAYEV LAVG   XXXXXXXXXMRPSEEGYQPIDGSASERQYMLATEAPLPQYVHGN
Sbjct:    1 MAPPAGRGGGGARGHRAPGGFRGGAPRPPXXXXXAPAGQFFGGPGVRARYGGGHGGTRGPLGTTCCCWVVLCTAAFVIVVTVGIMLIESLEECSTSTSDSENSNCIAYEVGLAVGAGVXXXXXXXXXMRPSEEGYQPIDGSASERQYMLATEAPLPQYVHGN 162
[Close]
BLAST of mRNA_Ecto-sp6_S_contig90.18336.1 vs. uniprot
Match: A0A6H5KD44_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD44_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.270e-6
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = -2 
Query: 1670 VVVVVVVFTLKTVPISLYPVPSYVRTDPTLDPVDSRG 1780
            + VVV VFTLKTVPISL+PVPSYVRTD TLD VDSRG
Sbjct:  129 IAVVVFVFTLKTVPISLFPVPSYVRTDTTLDAVDSRG 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig90.18336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K154_9PHAE3.840e-6177.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD44_9PHAE2.270e-683.78Reverse transcriptase domain-containing protein n=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig90contigEcto-sp6_S_contig90:327819..334136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2450
Hectar predicted targeting categorysignal anchor
Exons7
Cds size489
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig90.18336.1prot_Ecto-sp6_S_contig90.18336.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig90 330368..332555 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350552.3747098-UTR-Ecto-sp6_S_contig90:327818..3294161682350552.3747098-UTR-Ecto-sp6_S_contig90:327818..329416Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig90 327819..329416 -
1682350552.3863497-UTR-Ecto-sp6_S_contig90:330343..3303671682350552.3863497-UTR-Ecto-sp6_S_contig90:330343..330367Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig90 330344..330367 -
1682350552.4377422-UTR-Ecto-sp6_S_contig90:332555..3326921682350552.4377422-UTR-Ecto-sp6_S_contig90:332555..332692Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig90 332556..332692 -
1682350552.460384-UTR-Ecto-sp6_S_contig90:333658..3336691682350552.460384-UTR-Ecto-sp6_S_contig90:333658..333669Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig90 333659..333669 -
1682350552.4721408-UTR-Ecto-sp6_S_contig90:333842..3339601682350552.4721408-UTR-Ecto-sp6_S_contig90:333842..333960Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig90 333843..333960 -
1682350552.481174-UTR-Ecto-sp6_S_contig90:334063..3341361682350552.481174-UTR-Ecto-sp6_S_contig90:334063..334136Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig90 334064..334136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350552.3994787-CDS-Ecto-sp6_S_contig90:330367..3304641682350552.3994787-CDS-Ecto-sp6_S_contig90:330367..330464Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 330368..330464 -
1682350552.4152691-CDS-Ecto-sp6_S_contig90:331489..3315751682350552.4152691-CDS-Ecto-sp6_S_contig90:331489..331575Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 331490..331575 -
1682350552.4275517-CDS-Ecto-sp6_S_contig90:332249..3325551682350552.4275517-CDS-Ecto-sp6_S_contig90:332249..332555Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 332250..332555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig90.18336.1

>prot_Ecto-sp6_S_contig90.18336.1 ID=prot_Ecto-sp6_S_contig90.18336.1|Name=mRNA_Ecto-sp6_S_contig90.18336.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=163bp
MAPPAGRGGGGARGHGAPGGFRGGAPRPPPPRPPAPAGQFFGGPGARTGY
GGGHGGPRGPLGTTCCCWVVLCTISFVIVVSVGIMLIESLDECTTSTSDS
DNSNCIAYEVALAVGAGVVVLCCCCCCMRPSEEGYQPIDGSASERQYMLA
TEAPLPQYVHGN*
back to top

mRNA from alignment at Ecto-sp6_S_contig90:327819..334136-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig90.18336.1 ID=mRNA_Ecto-sp6_S_contig90.18336.1|Name=mRNA_Ecto-sp6_S_contig90.18336.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6318bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:327819..334136- (Ectocarpus species6 EcLAC_371)
CTCGCATATTTCTCCGACGAGGTGTGTGACCGGGTGCAAGCTGATTGCAT
CATGCCTTCACGGTTTCATCCATGTGAGATTCTATGTGCCTCTGGTTGAC
GGCAAGATAGACGCGCCTACAATATACTTCAGTATGTCCAGCAGTAGTCA
TGTGTGCGCGGGTCCAAAAGCAGCAGCAGCGACGGTTCTTGTCGTCTCAA
CAGCGAAGAGAAGGAAGTGTTGGAGGAGCGTTTCCGCACTGGGAGGGGCG
CAACATTGCTTCATACAACAGTTCGAGGATACGTACAACCAGAGGTGAGT
CATATGCAGTACTACTTCATCTCGATAGCTGGTACACCTTTTCCCACTTA
TGCATATCAAAAGGGCGAGGTTTGTTTGTGTGTTCGTTCGAAAGTTAGAT
TGAAAGAGTCAGCAAAAACAGGTGAACTATGTACTGCTGTACTGGTTGTG
GACAATATCCAGCTGAGACGAGCACGCCGTAGGCGATATGGCATGGGACA
TTACACCACTTGGACCGGTATCCAAAGCTCGATTTCTCTGCAGCAACGAC
AAAGACGGTGCCGAAACTGGCGGCGTTTGGAGCCGCCTGTTCGATAGCTT
TCCGAACACGTGTCGTTTGATTGTGGCATCCTCTGCGTCGTCGTGGAGTC
GGCCTTCGAAAATAGGTCCAGGATTTTTGATACGGAGCATCATAATCAGG
TATTTCACCCATAACATCTCCCTTGTACAGCAGTACTGCTGTACACGCTC
ACGGAGAATCGTGCCTGCCTTGTATCCAAACATGTAGGTTTTCTCGAGCT
TGCTCCAAATACGGGATTTGAGTTGCAAATGGTGTGCGGTGATTAAAGTA
GTTGCGGCGGCGACGTGCGTGCGTGTTGTTGCGTTTGGCTGGACCGGGTG
AGAGATGGAACCCCCTAGCCGGTGCGAGAGATGGCAGTGCACCGCAAGAG
GGTCGGCAGAGCAACAGCCGTAGCGTCGTTTTCGTGGTTGCTTTAGTCGA
GTGCTCGCGCGCTCGCGTTGTTGGAAGTCTTACTGTCGGATTCGCTCCAT
CTCTAACTCTCTCTCTCGAAATCGTTTCTCCTTCACTCTCTTTATGTGCC
TGGCCCAACCTGACGAGCTCCAAGCTACCTCAAGCTAGCAGACCGCTCTC
AGTATCGCACTCTCTCCCAGTGAAGGATGCGTATTTCTTCAGTAGTTGAG
TTTCCAAGGTTTCGCTTGTAAGTTGAAAATTGGTCCAATCTGCATGTTCG
TGCCGAGAACGATCAACGAACGCATCTCTAGTCCATGTGTGTTCTGTTTG
ATTCTGGCTGACTTCACCCTAGAGTGACCTTTTGGCTTTCGCTCCCTGTC
GCTGACTTGCCCAGGTCTGCCTCAAGCTTGTTTCGCGTGCTCTTCCCTTC
TCTTTTCGTTTTTGGTTCGTCTGCTCATGCTTGCGTCGTATCAGGAAAGG
CGATACACGCAACACACCAACGTTACCGTCGGCATCCCCCTGTAGACTGT
GCACACAGTCGGCGTCGGCAGCTTCTAGGTGGCATCGAGATCTCCCAAAC
CTTCTGATTCTTACTACATCGCTTCGCTACAATGGCGCCCCCCGCAGGGA
GGGGGGGAGGGGGGGCGAGGGGCCACGGGGCTCCCGGAGGATTCAGGGGC
GGTGCCCCTCGACCACCCCCACCGCGACCCCCAGCCCCAGCTGGGCAGTT
CTTTGGGGGCCCCGGGGCACGGACGGGGTATGGTGGGGGCCACGGGGGCC
CTCGAGGGCCGTTGGGGACGACGTGCTGCTGCTGGGTGGTCCTTTGTACG
ATATCCTTTGTGATCGTGGTGTCCGTGGGCATCATGCTCATCGAGTCTCT
GGATGAGTGTACTACGTCGACGTCGGATTCCGACAACGTGGGTGTTGGCT
AGAGCGGTGGTGTGATGCCATCGTGGGAATACGCGTTACTTTGGGGTCGA
CTCGGGACGTTGGAAGATAAGATAGTCGATTCGTCTCGGGTAGGAAAAAC
ATGGATGTGCCATGGTCTTTCGTCCTCCGCGGAACGTTGCAATGACGAAT
CAGTTACCAGGTAACTTACTACGCGATCACATGTTGTCACCTCCGTGGAT
TGGAGTAAACTTCAACTTTTCATTGGACAGCCTCGGATTGACGACGTGCC
AAACAAAGAAGAGCAACCGTGGTTCGAAAACTAGCGTTGTTTTTGTTTTC
TAGTTAAGTTTTGTTTGTATATCCCGAGCGTGGGGAAGTGATGGAGATTG
ATGTGTTCGGTTTCCCCCGTCGAGACTCGGCAAGGGTGGAATGTTTCCAA
CCTCTTTCGGGGTAGTTTTGGTCGAGTGGGCGACACGCTGTGTACGGCCG
TTGCCCCATACATGCACACTTTCAAACCATGCCGACCACCATGGAGATGG
TGACTTACCTGTTCTTCACTCGCTCGTTCATTTGCACTGTTCGCGCTTTA
GCCGTGTACAACGTTAACGCCCTGCTGCTGCCGCTGTTGTTGTTGTTGTT
GTTGTTGTTGCTGTCGCTGTTGACATGACGGCTGGGCGGAACGATGGGAT
GGCGGCCGCAGTCCAACTGCATCGCGTACGAGGTGGCACTTGCCGTGGGG
GCCGGTGTTGTCGTCCTGTGTTGCTGCTGCTGCTGCATGCGGCCAAGGTG
ATCCATCACGTTGGGGATTGGCTCCCTGTCAGTCATTTGATTCCTATGGT
AGATGGTTGCACTCATGGAGCGCTCTCCTCGCCCTCTGGCTTACCTGGGT
GTTGTGACGATGGTTTGTAGCCGGACCGAAGGGATCAAGAGGAAACGTCG
GTATATGCTACACGCATTACATGTGCCAGGCAATAGGCAAGTATCAACGG
GGCGTGGGCCGAAAACGAACCACGGAGATCGACGTGCCAAAAGATAGCGT
AATGCATTTTGAGATGGAGAATTGAATGGAAGTGCGACACACGATGAACG
GGGTATCTTGGTACAAGGCGTTGCACCAGGCTACCCGCTGAAGTACTTGG
TTTCCCTGTGTTTTCTTCAGTTGGATTGCATTTTCAATAACACTGCTGTC
TCTGTTGGTGTGCGTGTCTCCAGGTTTGAGGTTCAATTCAATACGCAGTC
GTGTACGCTGCTGGATTGTCCCTTCTCCTTAGTCGACATATCGTCCTTTT
TTGTTTTGATTATTAACATTCCAACCCAAAAAGTACGCGCTGTGTTGATC
CAGCCGTAGCTGAGATCAGGTCCTAGCATTTCGCGGCCGGTTATTGAGCT
TGGGCCAGCACCTGCGCGTGTTCCAACGTCCTTTGAAGTTTCCTCGATGT
ACGATACCAAGTGCAATGGCTACGCCGTCGTGTGTTTTGGCTTGTGTGCT
GGCAATAACGAAGCATTTCAAGAGCAAAACCCTGCCTGACCAGTCTTTGT
CTTTAGCACTACCAGTCGTTCTAGCTGTTATACTGTGTCCGTGGTGTTCT
GCGCATAAGACCGGACTATGTTGTGATGTTGACATCTGTTTGGTGTGTTA
TGTGACCGGTTAGTGTATCTCGGCATCGCTTTCGCAGTCTACGTACCGAA
TTGTTGACGTGGAACTTTGTGACGCGTACATCATTACTGCTTGGATGCAT
CGGCTAATATCATTTTACGATTTTACGAATGGTGCTGCCTTGACGTGTGC
TGGGTCAATCACATCCCCGTAGTGAGGAAGGATACCAGCCGATCGACGGC
TCTGCGTCGGAGAGACAGTACATGCTCGCGACGGAGGCACCGCTTCCCCA
GTATGTGCACGGCAACTGAAGCCCCTCTCTCGATGCCTTGAAGGTGAGCA
CCGTCGTCGCTGTTGTCCTAATGCCACCCGTCCGTGTAGATGTGGCGTAG
CACACACTCGAACCACGTTACCATTTTTGTTGTTGTCGCGAAACTGTTGA
TGGTTCTGTCGATGCGGAGGAACGTTCTGCTTCCTGGCAATGGAAAGCCT
CGTGTCAATTTTCGGGTTCGCTCTGTCGGGCAGTCGTGCTGCGAACGTCT
CTATCGACGTCGGGAAGCGATTTTATTGAAACGGGCGTCTTTTGTTCGGT
ACCGTGCCATCGACTTGGCTCGATTACTGTCGAAATAAACGTCAGCGTGC
TCGCACTTGTTCTGAGCACCGAGCGGAGGCAAATGGTTGATTAGGGGAAG
CCTTTGAGCTGGATCTGGTGTGAGTGGTGGGTGACGGCACCCGGCGAGAG
GCACATTCTCGACAACTCCAAACTTGTGATGAAGGCGACCCTCACTATTG
TATTCCGAGAACCGAGAAACACACAGAGTTCGCCAGCATGTCCTCCGTAG
CGCTAGAAGTGCCCGACTGATGACGTTCTTTCAACCCGTTGTGCTTCAGA
AGCTTGAAGCTTTCAAGCCCCATCTGCAGGTGTTTGTTAAGCAAGTCTGC
CGCATGTTTCGACTGGTTCATTCCAAAGTTGGGTCTGTCTTTTCGATGGC
CGGAGGTCTGTCCTTCTCATCCTGCGCCTTGGTTGTCTTGATGCTGTCGT
GTTCCATAGGCGTGTTTCGTTATCTTCGCACTAAGTGCCGTTGTGGGACG
TGGTGGCATGATTGGCACCGGCGATGCAACGGCGGTGCGAACCCGCCCGA
ACAAGAACCAAAAACTTTGCTAACGTTGCCCCTCCTTTGCGGTGCTCCCA
CCTATATACCTATCTGTGACGTTTTCCTCTTCTGTGCTGCATCGCATGTA
ATGTGTTGGTTGCCCTGCAGCCGACACCATGGACTACGGAGTACCGAAGT
CCACACGCAGATGTGAACGAAAAGCTGATGAAGGAAGATCATCGACGAAG
GGTAGTAGTGCATTCACGGGGCTGCTGCTCTGCTGTGTGCTAGGAATGAG
GGCCTCGGAACAAGAGACCGAAGTCCCTGCGCCATTTTTGCGGTGTGTTT
CACGCAGCAACTGCTTTTGTTATTGGTATGTTGCCCGAAGTCAATGTCGC
CCTCCTAACTCCTTAATGTTTGTGTTAACTGAGCTTTTGTGAGGTGTCGC
CCTGAGTTTACATCGAATGCATTCCATTGACTTGAGGCGTTTCACTTACC
TACCTTGCACCCTACTTCTCAGGGCAGCGATAGGCCAATACTGCTGTACA
TACTTTACGATAGGCTGGGGAAAACATTTTTGAGCCACGTTTGGCAACGT
ACTTCGAAGTAGTCCTGTTGATGATGCGTCCTCCCGGGGTCGTGCGGTGA
ATGGTCTCACCGCTAAGGCATCCGAAAGATGAGGAGAGAGAGTACGGCCT
CCCCCTCCGCGCGCACAAAAATATATTCAACGAGGCCCTCTCCCCCCCCT
CGCCTCGAATTGACACTATCTTCTGTTTGGTCAGCCCCCACCTTCCTGAG
TTCTTTTCTTGCGGCCGCCTTTGGGTCTCCGTTCTTGTCTGTATGCGCAT
TGGTACACACCATGGGGGCGGGTTGTTTGGGGGTACTCAGCACTCGATAC
AGATCTCTGTCGTTGATTTCTATTGACTTGCGGACCCCTCGGGGCCAGTT
TATTTGAGTGTACCTTTTTAGGGTAAGTTAACCTGTGACCACGGGAATCG
ACCGGGTCGAGTGTTGGATCAGTACGGACATACGAAGGTACTGGGTAGAG
AGAAATCGGAACGGTTTTTAATGTGAAGACAACAACAACAACAACAACAA
CAGATCAACGGAGGTCTAGGGGGTTTCGTGTATCATTGTGGTATGTGTTT
GTTGAGGGGTGATCCCCCTTCTGCGTGCATGGGCTAGCATGCCGGGCGCA
TTCGTTAATGATAAAAGGTTTCGAGTCAACCTTCTCTTCTCTGCGCTTCT
ATTTATCGATTAAATAATACCGACATATCGAAAGTATAAGATTGAGCGCA
GGGAAATCTGGGATTTGTGGAGCGGGATTGAATCGCGTGGCGTGTTGCAA
ATATATTGCGGGGAAGTTTTATCGGGGAAACGGATAAGCAAGGGCGTTGC
TGACGTAGTGGAGTACAACAGCACCAGCTGCTCCTGTGAGGCGAAAGGAA
GGGCGATCTGCCGTAGAGTCCACCGCGCGTTATTAGGCACAAGTTCAGGG
GTGGATCTCGGTTAGGTGATTTAGGGGAGCCCCCCCCAACTTTTTTCAAT
ACCCGATATCGATACAATAATTATCAGGAAAAGTAAGCACACACAGGACT
ACCCGTTCGCGATGTACCCACATTCGAACGGGATGTGGTGGAGTCTCATC
AGTGAGTGGTAATACTATCATACTACTTTTGCTGTATGCGTAGATTGATC
ACATGTATGTCCAATTGTTCCTCCGCACTGTTCTGCGAATCATTTCCGTA
CGCACGCATACGTATGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig90:327819..334136-

>mRNA_Ecto-sp6_S_contig90.18336.1 ID=mRNA_Ecto-sp6_S_contig90.18336.1|Name=mRNA_Ecto-sp6_S_contig90.18336.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:327819..334136- (Ectocarpus species6 EcLAC_371)
ATGGCGCCCCCCGCAGGGAGGGGGGGAGGGGGGGCGAGGGGCCACGGGGC
TCCCGGAGGATTCAGGGGCGGTGCCCCTCGACCACCCCCACCGCGACCCC
CAGCCCCAGCTGGGCAGTTCTTTGGGGGCCCCGGGGCACGGACGGGGTAT
GGTGGGGGCCACGGGGGCCCTCGAGGGCCGTTGGGGACGACGTGCTGCTG
CTGGGTGGTCCTTTGTACGATATCCTTTGTGATCGTGGTGTCCGTGGGCA
TCATGCTCATCGAGTCTCTGGATGAGTGTACTACGTCGACGTCGGATTCC
GACAACTCCAACTGCATCGCGTACGAGGTGGCACTTGCCGTGGGGGCCGG
TGTTGTCGTCCTGTGTTGCTGCTGCTGCTGCATGCGGCCAAGTGAGGAAG
GATACCAGCCGATCGACGGCTCTGCGTCGGAGAGACAGTACATGCTCGCG
ACGGAGGCACCGCTTCCCCAGTATGTGCACGGCAACTGA
back to top