prot_Ecto-sp6_S_contig9.18316.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig9.18316.1
Unique Nameprot_Ecto-sp6_S_contig9.18316.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length129
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18316.1 vs. uniprot
Match: A0A6H5L203_9PHAE (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L203_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 1.650e-83
Identity = 121/128 (94.53%), Postives = 122/128 (95.31%), Query Frame = 0
Query:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQFGKTAAPPRPPAASAPAXXXXSAGQGAQPPK 128
            MEGSGTRFEMELELMNCLASPEYLHYLAQ GYLDDRAF+RFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQFGKTAAPPRPPAASAPA    S GQGAQPPK
Sbjct:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQSGYLDDRAFVRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQFGKTAAPPRPPAASAPASAPASVGQGAQPPK 128          
BLAST of mRNA_Ecto-sp6_S_contig9.18316.1 vs. uniprot
Match: D7FV80_ECTSI (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV80_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 9.310e-49
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
Query:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRK 77
            MEGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRK
Sbjct:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRK 77          
BLAST of mRNA_Ecto-sp6_S_contig9.18316.1 vs. uniprot
Match: A0A835Z5G5_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G5_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.260e-37
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 0
Query:    7 RFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQ 97
            RFE+ELE + CLASPEYLH+LAQ  Y DD AF+ FL+YL Y++RP+YAK++ YPH LAMLD L+N+  FR E+   SFRDFVHQQQF HWQ
Sbjct:   25 RFEVELEFVQCLASPEYLHFLAQQRYFDDPAFMAFLQYLTYWRRPQYAKYLMYPHCLAMLDALLNSKRFRSELLMESFRDFVHQQQFFHWQ 115          
BLAST of mRNA_Ecto-sp6_S_contig9.18316.1 vs. uniprot
Match: A0A7S3XZ41_HETAK (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ41_HETAK)

HSP 1 Score: 132 bits (332), Expect = 7.970e-37
Identity = 60/97 (61.86%), Postives = 76/97 (78.35%), Query Frame = 0
Query:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQ 97
            ++G  +RFE+ELE + CL+SPEYLHYLAQ  Y +D AFI FL YLQY++RPEYAKFI YPH LA +++L  +  FRKE+A   F++FVHQQQF HWQ
Sbjct:   40 LDGGHSRFEVELEFVQCLSSPEYLHYLAQNKYFEDPAFINFLHYLQYWRRPEYAKFIIYPHCLAFMEML-EDEAFRKELAKPGFKEFVHQQQFFHWQ 135          
BLAST of mRNA_Ecto-sp6_S_contig9.18316.1 vs. uniprot
Match: A0A6U6IBL1_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IBL1_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.510e-36
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 0
Query:    7 RFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQF 98
            RFE+ELE + CLASP YLH+LA  G L D +F+ FLEYL+Y+ RPEYA+FITYPH L  LDLL  N  FR+E+A+V+FR+FVH+QQF  WQF
Sbjct:   33 RFELELEFVQCLASPAYLHHLATSGLLSDSSFLSFLEYLRYWSRPEYARFITYPHCLYFLDLLTTNETFRREMANVAFRNFVHEQQFYSWQF 124          
BLAST of mRNA_Ecto-sp6_S_contig9.18316.1 vs. uniprot
Match: A0A7S2XM67_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM67_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.450e-34
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 0
Query:    7 RFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQF 98
            RFE+ELE +  LASP Y+H+LA  G L   +FI FL YLQY+KRPEYAK+I+YPH    LDLLI+N PFR+E+A+V FR+FVH+QQF  WQ+
Sbjct:   28 RFELELEFLQSLASPAYVHHLATSGILQSPSFIAFLRYLQYWKRPEYAKYISYPHCFFFLDLLIHNEPFRREMANVGFRNFVHEQQFYSWQY 119          
BLAST of mRNA_Ecto-sp6_S_contig9.18316.1 vs. uniprot
Match: A0A7S2EVA4_TRICV (Mediator of RNA polymerase II transcription subunit 31 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVA4_TRICV)

HSP 1 Score: 117 bits (294), Expect = 3.020e-31
Identity = 52/91 (57.14%), Postives = 69/91 (75.82%), Query Frame = 0
Query:    7 RFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQ 97
            RFE+ELE + CLASP Y+H+LA  G L D +F+ FL YL+Y+  PEYA+F+ YPH L  LDLL  +  FR+E+A+V+FR+FVH+QQF  WQ
Sbjct:   39 RFELELEFVQCLASPAYMHHLATSGLLSDPSFLSFLRYLRYWSHPEYARFLVYPHCLYFLDLLCESEGFRREMANVAFRNFVHEQQFYGWQ 129          
BLAST of mRNA_Ecto-sp6_S_contig9.18316.1 vs. uniprot
Match: A0A7S3QJ33_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ33_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.490e-31
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 0
Query:    7 RFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQ-YFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQF 98
            RFE+ELE +  LASP YLH+LA  GY  D AF+ +L YL+ Y+ RPEYAK+ITYPH L  LDL I    FRKEI+ V FR+FVH+QQF++WQ+
Sbjct:   77 RFELELEFVQSLASPAYLHHLATQGYFQDEAFLTYLRYLRSYWTRPEYAKYITYPHCLFFLDLAIEKEAFRKEISQVGFRNFVHEQQFMNWQY 169          
BLAST of mRNA_Ecto-sp6_S_contig9.18316.1 vs. uniprot
Match: UPI0006448E0A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448E0A)

HSP 1 Score: 117 bits (294), Expect = 1.120e-30
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 0
Query:    2 EGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQFGKT 101
            E +  RF MELE + CL++P YL+YLAQ  Y  D+AF+ +L YL Y+K+PEYAKFI YP SL  LDLL     FR+E+ H    +F+HQQQF HWQ+ +T
Sbjct:   60 EANNQRFTMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLSYLLYWKQPEYAKFIVYPQSLYFLDLL-QQERFRQELNHAQSTEFIHQQQFYHWQYYRT 158          
BLAST of mRNA_Ecto-sp6_S_contig9.18316.1 vs. uniprot
Match: A0A8J4V0P4_9MYCE (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V0P4_9MYCE)

HSP 1 Score: 116 bits (291), Expect = 4.780e-29
Identity = 54/97 (55.67%), Postives = 70/97 (72.16%), Query Frame = 0
Query:    2 EGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQF 98
            E +  RF MELE + CL++P YL+YLAQ  Y  D+AF+ +L+YL Y+K+PEYAKFI YP SL  LDLL     FR+E+ HV   DF+H+QQF HWQ+
Sbjct:  178 EANHIRFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLKYLLYWKKPEYAKFIVYPQSLYFLDLL-QEERFRQELNHVVSTDFIHEQQFYHWQY 273          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18316.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L203_9PHAE1.650e-8394.53Mediator of RNA polymerase II transcription subuni... [more]
D7FV80_ECTSI9.310e-49100.00Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z5G5_9STRA1.260e-3765.93Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3XZ41_HETAK7.970e-3761.86Mediator of RNA polymerase II transcription subuni... [more]
A0A6U6IBL1_9STRA3.510e-3664.13Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2XM67_9STRA1.450e-3461.96Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2EVA4_TRICV3.020e-3157.14Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3QJ33_9STRA3.490e-3160.22Mediator of RNA polymerase II transcription subuni... [more]
UPI0006448E0A1.120e-3054.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4V0P4_9MYCE4.780e-2955.67Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038089Mediator complex, subunit Med31 domain superfamilyGENE3D1.10.10.1340coord: 2..93
e-value: 4.7E-28
score: 98.5
IPR008831Mediator complex, subunit Med31PFAMPF05669Med31coord: 6..97
e-value: 3.4E-33
score: 113.5
IPR008831Mediator complex, subunit Med31PANTHERPTHR13186MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT SOH1coord: 6..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2971250..2973520 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18316.1mRNA_Ecto-sp6_S_contig9.18316.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig9 2970747..2973574 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18316.1 ID=prot_Ecto-sp6_S_contig9.18316.1|Name=mRNA_Ecto-sp6_S_contig9.18316.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=129bp
MEGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKR
PEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQFGK
TAAPPRPPAASAPASAPASAGQGAQPPK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038089Med31_sf
IPR008831Mediator_Med31