prot_Ecto-sp6_S_contig9.18292.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig9.18292.1
Unique Nameprot_Ecto-sp6_S_contig9.18292.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length279
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18292.1 vs. uniprot
Match: D7FVA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA5_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 2.080e-118
Identity = 197/224 (87.95%), Postives = 198/224 (88.39%), Query Frame = 0 
Query:   19 MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSEDRDSDEEGGNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDNDTSVADGDPRVDTFVEPYQGRPQLKGMRVRYKPAGAGSEYSPSHPPAGHQQPKGCQDDEYGATPATPDQGKKAXXXXXXXXXXXXXXXXXEVSAETLKS 242
            MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSED DSDEEGGNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPD D SVADGDPRVDTFVEPYQGRPQLKGMRVRYKPA AGSEYSP  PPAGH+QPKG QDDE GATPA        XXXXXXXX         EVSAET KS
Sbjct:    1 MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSEDGDSDEEGGNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDVDASVADGDPRVDTFVEPYQGRPQLKGMRVRYKPARAGSEYSPCRPPAGHEQPKGRQDDEDGATPAXXXXXXXXXXXXXXXXRGVAAAQAAEVSAETPKS 224
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18292.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVA5_ECTSI2.080e-11887.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013240DNA-directed RNA polymerase I, subunit RPA34.5PFAMPF08208RNA_polI_A34coord: 38..273
e-value: 1.8E-40
score: 139.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2722961..2726177 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18292.1mRNA_Ecto-sp6_S_contig9.18292.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig9 2722961..2726177 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18292.1 ID=prot_Ecto-sp6_S_contig9.18292.1|Name=mRNA_Ecto-sp6_S_contig9.18292.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=279bp
MAAHTSSKEAVVLLDTLNMAEGFTAADYVTSLPLSEVQGKRLWLLRVPRH
IDTSRLEGVKVKLPRKGREGKVLGRANKRNDSEDRDSDEEGGNRDGEDLA
LRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDNDTSVADG
DPRVDTFVEPYQGRPQLKGMRVRYKPAGAGSEYSPSHPPAGHQQPKGCQD
DEYGATPATPDQGKKAKKASAANSRGAAAAQAAEVSAETLKSSKKKKRKS
TAGGGRAEEEGHGVSSAKKSKKKKGVER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013240DNA-dir_RNA_pol1_su_RPA34