prot_Ecto-sp6_S_contig9.18219.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig9.18219.1
Unique Name	prot_Ecto-sp6_S_contig9.18219.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	342

Homology

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BLAST of mRNA_Ecto-sp6_S_contig9.18219.1 vs. uniprot
Match: D7FTS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS0_ECTSI)

HSP 1 Score: 627 bits (1618), Expect = 2.700e-226
Identity = 337/341 (98.83%), Postives = 338/341 (99.12%), Query Frame = 0

Query:    1 MLSRVANAGARGALRARLPAASAGGRARVPPLIQPAFQSFHAGLPSRESAVDKPAPSRAEDIEANKNAKLFGDNPRLEGMIEAGKLDSAKRLVPLALFLTVPALCREWYVMTEETMLMGCFFLFLGAAMDFGGEGVGKYFDDQTAEIKRAQQSAEEAQIKRVTGDLATEKARLVEMQQMDAISKAIAYGNTRRNEAEAMAAPHTSRESTVKLLEALRGAKIKRVADLRNAEIATALTEVVAKVSADKKLKKAALDNALMTLADPSKAAKVDPVSEVFAQYWKQKAIDTEKNKNKPVALTPEQIAANEADIRSLCEKVGQDPAMLLASMPKTYTADTPTLFS 341
            MLSRVANAGARGALRARLPAASAGGRARVPPLIQPAFQSFHAGLPSRESAVDKPAPSRAEDIEANKNAKLFGDNPRLEGMIEAGKLDSAKRLVPLALFLTVPALCREWYVMTEETMLMGCFFLFLGAAMDFGGEGVGKYFDDQTAEIKRAQQSAE+ QIKRVTGDLATEKARLVEMQQMDAISKAIAYGNTRRNEAEAMAAPH SRESTVKLLEALRGAKIKRVADLRNAEIATALTEVVAKVSADKKLKKAALDNALMTLADPSKAAKVDPVSEVFAQYWKQKAIDTEKNKNKPVALTPEQIA NEADIRSLCEKVGQDPAMLLASMPKTYTADTPTLFS
Sbjct:    1 MLSRVANAGARGALRARLPAASAGGRARVPPLIQPAFQSFHAGLPSRESAVDKPAPSRAEDIEANKNAKLFGDNPRLEGMIEAGKLDSAKRLVPLALFLTVPALCREWYVMTEETMLMGCFFLFLGAAMDFGGEGVGKYFDDQTAEIKRAQQSAEQEQIKRVTGDLATEKARLVEMQQMDAISKAIAYGNTRRNEAEAMAAPHMSRESTVKLLEALRGAKIKRVADLRNAEIATALTEVVAKVSADKKLKKAALDNALMTLADPSKAAKVDPVSEVFAQYWKQKAIDTEKNKNKPVALTPEQIATNEADIRSLCEKVGQDPAMLLASMPKTYTADTPTLFS 341

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BLAST of mRNA_Ecto-sp6_S_contig9.18219.1 vs. uniprot
Match: A0A836CD66_9STRA (ATP synthase subunit b n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD66_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.720e-29
Identity = 90/279 (32.26%), Postives = 144/279 (51.61%), Query Frame = 0

Query:   27 ARVPPLIQPAFQSFHAGLPSRESAVDKPAPSRAEDIEANKNAKLFGDNPRLEGMIEAGKLDSAKRLVPLALFLTVPALCREWYVMTEETMLMGCFFLFLGAAMDFGGEGVGKYFDDQTAEIKRAQQSAEEAQIKRVTGDLATEKARLVE---MQQMDAISKAIAYGNTRRNEAEAMAA--PHTSRESTVKLLEALRGAKIKRVADLRNAEIATALTEVVAKVSADKKLKKAALDNALMTLADPSKAAKVDPVSEVFAQYWKQKAIDTEKNKNKPVALTP 300
            AR+ P   PA Q FHAG+P+R+           E+ +  + +K+      +   +E   L    R +P+ L L +PAL +EW V++EET L+GCF LF+G      G+ +G   D Q   I  A+   E+A I+ +   +A   ARL     M  + A+ +      T   +A+ +    PH  RE TV +L+    A+       ++A + +A+  V  +V +DKKLKK ALD AL++LADP+KA   D V+ +F Q++K  +   +K  ++   +TP
Sbjct:   17 ARLAPRTAPATQHFHAGIPARK-----------EETQPAETSKILLTPGTI---VEKLGLHDWTRALPVGLILAIPALNQEWIVLSEETQLLGCFMLFVGTIYTKFGDSIGAALDAQADAILDARNKEEDASIEVIKETIAFHHARLASAGIMSDLIALER-----ETMEKQAKLLTVKVPHDMRELTVAMLDTKAAAEANEWHAAQDALVKSAVDTVTEQVQSDKKLKKTALDEALLSLADPAKAPATDAVTGLFTQFFKDTSAQAQKEASQEKTVTP 276

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig9.18219.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig9.18219.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FTS0_ECTSI	2.700e-226	98.83	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CD66_9STRA	4.720e-29	32.26	ATP synthase subunit b n=1 Tax=Tribonema minus Tax...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 140..160
None	No IPR available	PANTHER	PTHR12733:SF3	ATP SYNTHASE F(0) COMPLEX SUBUNIT B1, MITOCHONDRIAL	coord: 1..266
IPR008688	ATP synthase, F0 complex, subunit B/MI25	PFAM	PF05405	Mt_ATP-synt_B	coord: 104..170 e-value: 1.2E-7 score: 31.5
IPR013837	ATP synthase, F0 complex, subunit B	PANTHER	PTHR12733	MITOCHONDRIAL ATP SYNTHASE B CHAIN	coord: 1..266

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig9	contig	Ecto-sp6_S_contig9:1958673..1964071 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig9.18219.1	mRNA_Ecto-sp6_S_contig9.18219.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig9 1956982..1964480 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18219.1 ID=prot_Ecto-sp6_S_contig9.18219.1|Name=mRNA_Ecto-sp6_S_contig9.18219.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=342bp
MLSRVANAGARGALRARLPAASAGGRARVPPLIQPAFQSFHAGLPSRESA
VDKPAPSRAEDIEANKNAKLFGDNPRLEGMIEAGKLDSAKRLVPLALFLT
VPALCREWYVMTEETMLMGCFFLFLGAAMDFGGEGVGKYFDDQTAEIKRA
QQSAEEAQIKRVTGDLATEKARLVEMQQMDAISKAIAYGNTRRNEAEAMA
APHTSRESTVKLLEALRGAKIKRVADLRNAEIATALTEVVAKVSADKKLK
KAALDNALMTLADPSKAAKVDPVSEVFAQYWKQKAIDTEKNKNKPVALTP
EQIAANEADIRSLCEKVGQDPAMLLASMPKTYTADTPTLFS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008688	ATP_synth_Bsub_B/MI25
IPR013837	ATP_synth_F0_suB