prot_Ecto-sp6_S_contig9.18196.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig9.18196.1
Unique Nameprot_Ecto-sp6_S_contig9.18196.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length266
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S3UTQ0_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ0_HETAK)

HSP 1 Score: 439 bits (1128), Expect = 1.200e-150
Identity = 210/264 (79.55%), Postives = 236/264 (89.39%), Query Frame = 0
Query:    4 KLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEG-LDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 266
            K+   LG DGLP VG+WV+PGD L C VD+L+G+ TV KHK++E A V+ VR LG EG L ++ L+R S+TLR+PRNP+IGDKFSSRHGQKGV+SILWP E+MPFTESG++PDVIINPHAFPSRMTIGMLIESMAGK+GAMHG YQDATPF FHE+ R +DHFGEQLR+AGYAYHGSEPLYSGV+GTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVN LTRQP+KGRK  GG+R GEMERDALLSHGAAFLLHDRLMNCSD
Sbjct:  154 KIEPSLGEDGLPHVGAWVKPGDPLLCHVDDLSGEKTVVKHKDTETAVVQDVRLLGAEGGLPQADLTRVSLTLRYPRNPIIGDKFSSRHGQKGVLSILWPQENMPFTESGMTPDVIINPHAFPSRMTIGMLIESMAGKAGAMHGHYQDATPFTFHEQRRAVDHFGEQLRAAGYAYHGSEPLYSGVSGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNPLTRQPVKGRKRHGGIRFGEMERDALLSHGAAFLLHDRLMNCSD 417          
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S2V1Y1_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y1_9STRA)

HSP 1 Score: 419 bits (1078), Expect = 9.470e-145
Identity = 201/269 (74.72%), Postives = 229/269 (85.13%), Query Frame = 0
Query:    3 TKLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRAL-----GPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 266
            TK+ E L  DGLP VGSWV+ GD LY  +DE + ++  GKHK+ E+ACV+ +R L       E     G++    TLR+PRNP+IGDKFSSRHGQKGV+SILWP EDMPFTESG++PDVIINPHAFPSRMTIGMLIESMAGKSGA+HG YQD+TPF FHE+DR ID+FGEQLR+AGYAY+GSEPLYSG++GTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVN LTRQPIKGRK  GG+R GEMERD+LLSHGA+FLLHDRLMNCSD
Sbjct:   34 TKVSEQLDEDGLPRVGSWVKEGDPLYATIDEDSQEIHTGKHKDMEKACVQDIRVLTGKVAAQETAGIGGVTYMRYTLRYPRNPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMTPDVIINPHAFPSRMTIGMLIESMAGKSGALHGRYQDSTPFTFHEKDRAIDYFGEQLRAAGYAYYGSEPLYSGISGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNPLTRQPIKGRKRHGGIRFGEMERDSLLSHGASFLLHDRLMNCSD 302          
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA)

HSP 1 Score: 439 bits (1129), Expect = 5.030e-143
Identity = 207/263 (78.71%), Postives = 237/263 (90.11%), Query Frame = 0
Query:    4 KLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 266
            KL+E L  DGLP +G+ V+ GD LYC +D  T K   GKHKESE A VETVRA+G  G+++  +++AS+TLRFPRNP+IGDKFSSRHGQKGVMSILWP  DMPFTESG++PD+IINPHAFPSRMTIGMLIESMAGK+GA+HG +QDATPF+FHE++RVIDHFGEQL+SAGYAY+GSEPLYSG++GTVMHADIFIGLVYYQRLRHMVSDKSQVRA+G VN LTRQPIKGRKNKGG+R GEMERD+LLSHGAAFLLHDRLMNCSD
Sbjct:  824 KLYENLDNDGLPRIGACVKEGDPLYCAIDLRTNKTKTGKHKESEMAYVETVRAVGGAGINKEAMAKASMTLRFPRNPIIGDKFSSRHGQKGVMSILWPQSDMPFTESGMTPDIIINPHAFPSRMTIGMLIESMAGKAGALHGHFQDATPFSFHEKNRVIDHFGEQLKSAGYAYYGSEPLYSGISGTVMHADIFIGLVYYQRLRHMVSDKSQVRASGAVNPLTRQPIKGRKNKGGIRFGEMERDSLLSHGAAFLLHDRLMNCSD 1086          
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: W7TET2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TET2_9STRA)

HSP 1 Score: 431 bits (1107), Expect = 2.880e-139
Identity = 209/264 (79.17%), Postives = 231/264 (87.50%), Query Frame = 0
Query:    5 LHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSG--LSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 266
            L E L  DGLP+VG+WV+ GD LY  VD LTG+V VGKHKESE ACVE VR LG EG   +   L   SITLRFPR P+IGDKFSSRHGQKGV+SILWP EDMPFTESG+SPD+IINPHAFPSRMTIGMLIESMAGKSG++HG YQDATPF+FHE+ R ID+FGEQLR+AGYAY GSEPLYSG++GT+MHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRK  GG+R GEMERD+LLSHG ++LLHDRLMNCSD
Sbjct:  884 LFEKLEADGLPVVGTWVKEGDVLYSAVDSLTGEVEVGKHKESEVACVEAVRLLGLEGTSGATEPLDTVSITLRFPRRPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMSPDIIINPHAFPSRMTIGMLIESMAGKSGSLHGMYQDATPFSFHEDRRAIDYFGEQLRAAGYAYFGSEPLYSGLSGTLMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKRHGGIRFGEMERDSLLSHGTSYLLHDRLMNCSD 1147          
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S1YVL7_TRICV (DNA-directed RNA polymerase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YVL7_TRICV)

HSP 1 Score: 395 bits (1015), Expect = 5.870e-135
Identity = 194/271 (71.59%), Postives = 221/271 (81.55%), Query Frame = 0
Query:    6 HEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLSRAS--------ITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHE--EDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 266
            H+ L  DGLP VG W+  G+ +YC+VD LT     GKHKE E+ACV++VR LG       G SRAS        ITLRFPRNPVIGDKFSSRHGQKGVMSILWP  DMPF+E+G+ PDVIINPHAFPSRMTIGMLIESMAGKSGA+HG YQDATPF+FHE  +   +DHFGEQLR+AG+ Y+GSEPLYSGV+G +MHAD+++G+VYYQRLRHMVSDK QVRATG VN LTRQPIKGRK  GG+RLGEMERD+LLSHG AFLL DRL+NCSD
Sbjct:   39 HKNLEEDGLPRVGDWISEGEPMYCIVDALTDDSKTGKHKEKEKACVQSVRRLGQPVKVARGASRASANQDDAISITLRFPRNPVIGDKFSSRHGQKGVMSILWPQVDMPFSETGVCPDVIINPHAFPSRMTIGMLIESMAGKSGALHGMYQDATPFSFHESGDKLAVDHFGEQLRAAGFNYYGSEPLYSGVSGCLMHADLYMGVVYYQRLRHMVSDKYQVRATGQVNNLTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLLDRLLNCSD 309          
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7R9U7R0_9STRA (DNA-directed RNA polymerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7R0_9STRA)

HSP 1 Score: 398 bits (1022), Expect = 2.580e-133
Identity = 182/263 (69.20%), Postives = 225/263 (85.55%), Query Frame = 0
Query:    4 KLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 266
            K++E L +DGLP VG W++  D LYC+++   G+  V KHK+ E+ACV+T+R LG +G ++  L R S+TLR PRNP+IGDKFSSRHGQKGVMS+LWP EDMPF+ESG+SPDVIINPHAFPSRMTIGML+ESMAGKSGA+HG YQDATPF F+E+D  I++FGEQLR+AGY+Y GSEP+YSG++G  +  DI++GLVYYQRLRHMVSDK+QVR+TG V+ +TRQP+KGRK  GG+R GEMERD+L+SHG AFLLHDRLMNCSD
Sbjct:  247 KIYEELDFDGLPHVGQWLEQDDPLYCLLNTTNGESHVTKHKDVERACVQTIRLLGSDGKNKDKLRRVSVTLRIPRNPIIGDKFSSRHGQKGVMSVLWPQEDMPFSESGISPDVIINPHAFPSRMTIGMLVESMAGKSGALHGMYQDATPFQFNEKDTAINYFGEQLRAAGYSYWGSEPMYSGLSGLPLQVDIYLGLVYYQRLRHMVSDKAQVRSTGGVSPVTRQPVKGRKRGGGIRFGEMERDSLISHGTAFLLHDRLMNCSD 509          
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S3V7B4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7B4_9STRA)

HSP 1 Score: 409 bits (1052), Expect = 4.090e-131
Identity = 198/267 (74.16%), Postives = 228/267 (85.39%), Query Frame = 0
Query:    5 LHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLSR---ASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEE-DRV-IDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 266
            L+  LG DGLP VG+WV  GD +YCVVDELTG+   GKHKE E+AC++ VR LG     +  ++R    SITLR PRNPVIGDKFSSRHGQKGV+SILWP  DMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMAGKSGAMHG +QDATPF+FHE  D++ +D+FGEQL+SAGY+Y+GSEPLYSGV+G +MHAD++IG+VYYQRLRHMVSDK Q RATG VN LTRQPIKGRK  GG+RLGEMERD+LLSHG AFLLHDRL+NCSD
Sbjct:  889 LYPNLGEDGLPEVGTWVDEGDPIYCVVDELTGRTRPGKHKEKEKACIQQVRLLGQPSASKDKVNRDDIVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQTDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGMFQDATPFSFHESGDKIAVDYFGEQLQSAGYSYYGSEPLYSGVSGCLMHADLYIGVVYYQRLRHMVSDKYQARATGQVNALTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLHDRLLNCSD 1155          
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S4JAV2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAV2_9STRA)

HSP 1 Score: 402 bits (1034), Expect = 3.650e-128
Identity = 201/282 (71.28%), Postives = 229/282 (81.21%), Query Frame = 0
Query:    1 AATKLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLSRA--------------SITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHE--EDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 266
            AA  LH  L  DGLPM G WV  GDALYCVVD LTGK  VG+HKE E+ACV+ VR LG     +S  S++              S+TLRFPRNPVIGDKFSSRHGQKGVMSILWP  DMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMAGK+GA+HG YQDATPF+FHE  +   +D+FGEQL++AGY+Y+GSEPLYSGV+G +M AD+++G+VYYQRLRHMVSDK QVRATG VN +TRQPIKGRK  GGVRLGEMERD+LLSHGAAFLL DRL+NCSD
Sbjct:  922 AAPWLHRTLDEDGLPMPGEWVSEGDALYCVVDTLTGKDNVGRHKEKEKACVQCVRKLGSASAGQSMNSKSGGRGSSSAVPDEKISLTLRFPRNPVIGDKFSSRHGQKGVMSILWPQVDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKAGALHGIYQDATPFSFHETSDKLAVDYFGEQLQAAGYSYYGSEPLYSGVSGCIMQADLYLGVVYYQRLRHMVSDKYQVRATGSVNAVTRQPIKGRKQGGGVRLGEMERDSLLSHGAAFLLLDRLVNCSD 1203          
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A6U3PLE0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PLE0_9STRA)

HSP 1 Score: 402 bits (1033), Expect = 4.500e-128
Identity = 199/276 (72.10%), Postives = 228/276 (82.61%), Query Frame = 0
Query:    5 LHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLS------------RASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHE--EDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 266
            L+  +G DGLP VG+WV+ GD LYCV+DELTG     KHKE E ACV++VR LG E +  S  +            + SITLR PRNPVIGDKFSSRHGQKGV+SILWP EDMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMAGKSGAMHG +QDATPF+FHE  +   ID+FGEQL++AGY Y+GSEPLYSGV+G +MHAD++IG+V+YQRLRHMVSDK QVRATG VNQLTRQPIKGRK  GG+RLGEMERD+LLSHG AFLLHDRL+NCSD
Sbjct:  920 LYPNIGEDGLPEVGTWVKEGDPLYCVIDELTGADFAAKHKEKESACVQSVRLLG-EHISHSTTTQRQKMAPSQQDQKVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGLFQDATPFSFHETGDKLAIDYFGEQLQAAGYNYYGSEPLYSGVSGCLMHADLYIGVVFYQRLRHMVSDKYQVRATGAVNQLTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLHDRLLNCSD 1194          
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S3HBZ7_9STRA (DNA-directed RNA polymerase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBZ7_9STRA)

HSP 1 Score: 375 bits (963), Expect = 2.350e-127
Identity = 185/269 (68.77%), Postives = 215/269 (79.93%), Query Frame = 0
Query:    3 TKLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPE--GLDR---SGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 266
            TK  E L  DGLP  G  V+ GD + C  D  TG+  V  HK+ E A V TVR +G    G  R   S L + SITLR+ RNPVIGDKFSSRHGQKG +S+LWP E+MPF+ESG+SPDV+INPHAFPSRMTIGML+ESMAGKSGA+HGT+Q+ATPF FHE+ +VID+ G+QL+ AGY YHGSEPLY+G+TG VM ADIF+G+V+YQRLRHMVSDKSQVRATGPV  +TRQP+KGRK  GG+RLGEMERDALLSHG AF L DRLMNCSD
Sbjct:   30 TKFCEDLDSDGLPFEGVSVKYGDPIVCFYDATTGEHKVINHKDQESAFVSTVRIIGSHSGGKTRGAKSNLRKVSITLRYRRNPVIGDKFSSRHGQKGTLSVLWPQENMPFSESGMSPDVLINPHAFPSRMTIGMLVESMAGKSGAVHGTFQNATPFRFHEDQKVIDYVGQQLKEAGYNYHGSEPLYNGLTGQVMQADIFMGVVFYQRLRHMVSDKSQVRATGPVTAITRQPVKGRKKHGGIRLGEMERDALLSHGVAFCLQDRLMNCSD 298          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UTQ0_HETAK1.200e-15079.55DNA-directed RNA polymerase n=1 Tax=Heterosigma ak... [more]
A0A7S2V1Y1_9STRA9.470e-14574.72DNA-directed RNA polymerase n=1 Tax=Fibrocapsa jap... [more]
A0A835YVF9_9STRA5.030e-14378.71DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
W7TET2_9STRA2.880e-13979.17DNA-directed RNA polymerase subunit beta n=2 Tax=M... [more]
A0A7S1YVL7_TRICV5.870e-13571.59DNA-directed RNA polymerase n=1 Tax=Trieres chinen... [more]
A0A7R9U7R0_9STRA2.580e-13369.20DNA-directed RNA polymerase n=1 Tax=Pinguiococcus ... [more]
A0A7S3V7B4_9STRA4.090e-13174.16DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A7S4JAV2_9STRA3.650e-12871.28DNA-directed RNA polymerase subunit beta n=1 Tax=O... [more]
A0A6U3PLE0_9STRA4.500e-12872.10DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
A0A7S3HBZ7_9STRA2.350e-12768.77DNA-directed RNA polymerase n=1 Tax=Spumella elong... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 261..266
NoneNo IPR availableGENE3D3.90.1800.10coord: 221..266
e-value: 1.2E-23
score: 85.7
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 7..266
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 6..266
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 8..233
e-value: 4.9E-74
score: 249.7
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 23..220
e-value: 8.8E-63
score: 213.7
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 236..266
e-value: 2.2E-10
score: 40.8
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 7..266
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 83..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1758635..1762120 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18196.1mRNA_Ecto-sp6_S_contig9.18196.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig9 1758633..1762120 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18196.1 ID=prot_Ecto-sp6_S_contig9.18196.1|Name=mRNA_Ecto-sp6_S_contig9.18196.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=266bp
AATKLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQAC
VETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILW
PAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDA
TPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLV
YYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLS
HGAAFLLHDRLMNCSD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007120DNA-dir_RNAP_su2_dom
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007641RNA_pol_Rpb2_7
IPR015712DNA-dir_RNA_pol_su2
IPR007121RNA_pol_bsu_CS