mRNA_Ecto-sp6_S_contig9.18196.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18196.1
Unique NamemRNA_Ecto-sp6_S_contig9.18196.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S3UTQ0_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ0_HETAK)

HSP 1 Score: 439 bits (1128), Expect = 1.200e-150
Identity = 210/264 (79.55%), Postives = 236/264 (89.39%), Query Frame = 1 
Query:   10 KLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEG-LDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 798
            K+   LG DGLP VG+WV+PGD L C VD+L+G+ TV KHK++E A V+ VR LG EG L ++ L+R S+TLR+PRNP+IGDKFSSRHGQKGV+SILWP E+MPFTESG++PDVIINPHAFPSRMTIGMLIESMAGK+GAMHG YQDATPF FHE+ R +DHFGEQLR+AGYAYHGSEPLYSGV+GTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVN LTRQP+KGRK  GG+R GEMERDALLSHGAAFLLHDRLMNCSD
Sbjct:  154 KIEPSLGEDGLPHVGAWVKPGDPLLCHVDDLSGEKTVVKHKDTETAVVQDVRLLGAEGGLPQADLTRVSLTLRYPRNPIIGDKFSSRHGQKGVLSILWPQENMPFTESGMTPDVIINPHAFPSRMTIGMLIESMAGKAGAMHGHYQDATPFTFHEQRRAVDHFGEQLRAAGYAYHGSEPLYSGVSGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNPLTRQPVKGRKRHGGIRFGEMERDALLSHGAAFLLHDRLMNCSD 417
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BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S2V1Y1_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y1_9STRA)

HSP 1 Score: 419 bits (1078), Expect = 9.470e-145
Identity = 201/269 (74.72%), Postives = 229/269 (85.13%), Query Frame = 1 
Query:    7 TKLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRAL-----GPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 798
            TK+ E L  DGLP VGSWV+ GD LY  +DE + ++  GKHK+ E+ACV+ +R L       E     G++    TLR+PRNP+IGDKFSSRHGQKGV+SILWP EDMPFTESG++PDVIINPHAFPSRMTIGMLIESMAGKSGA+HG YQD+TPF FHE+DR ID+FGEQLR+AGYAY+GSEPLYSG++GTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVN LTRQPIKGRK  GG+R GEMERD+LLSHGA+FLLHDRLMNCSD
Sbjct:   34 TKVSEQLDEDGLPRVGSWVKEGDPLYATIDEDSQEIHTGKHKDMEKACVQDIRVLTGKVAAQETAGIGGVTYMRYTLRYPRNPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMTPDVIINPHAFPSRMTIGMLIESMAGKSGALHGRYQDSTPFTFHEKDRAIDYFGEQLRAAGYAYYGSEPLYSGISGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNPLTRQPIKGRKRHGGIRFGEMERDSLLSHGASFLLHDRLMNCSD 302
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BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA)

HSP 1 Score: 439 bits (1129), Expect = 5.030e-143
Identity = 207/263 (78.71%), Postives = 237/263 (90.11%), Query Frame = 1 
Query:   10 KLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 798
            KL+E L  DGLP +G+ V+ GD LYC +D  T K   GKHKESE A VETVRA+G  G+++  +++AS+TLRFPRNP+IGDKFSSRHGQKGVMSILWP  DMPFTESG++PD+IINPHAFPSRMTIGMLIESMAGK+GA+HG +QDATPF+FHE++RVIDHFGEQL+SAGYAY+GSEPLYSG++GTVMHADIFIGLVYYQRLRHMVSDKSQVRA+G VN LTRQPIKGRKNKGG+R GEMERD+LLSHGAAFLLHDRLMNCSD
Sbjct:  824 KLYENLDNDGLPRIGACVKEGDPLYCAIDLRTNKTKTGKHKESEMAYVETVRAVGGAGINKEAMAKASMTLRFPRNPIIGDKFSSRHGQKGVMSILWPQSDMPFTESGMTPDIIINPHAFPSRMTIGMLIESMAGKAGALHGHFQDATPFSFHEKNRVIDHFGEQLKSAGYAYYGSEPLYSGISGTVMHADIFIGLVYYQRLRHMVSDKSQVRASGAVNPLTRQPIKGRKNKGGIRFGEMERDSLLSHGAAFLLHDRLMNCSD 1086
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BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: W7TET2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TET2_9STRA)

HSP 1 Score: 431 bits (1107), Expect = 2.880e-139
Identity = 209/264 (79.17%), Postives = 231/264 (87.50%), Query Frame = 1 
Query:   13 LHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSG--LSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 798
            L E L  DGLP+VG+WV+ GD LY  VD LTG+V VGKHKESE ACVE VR LG EG   +   L   SITLRFPR P+IGDKFSSRHGQKGV+SILWP EDMPFTESG+SPD+IINPHAFPSRMTIGMLIESMAGKSG++HG YQDATPF+FHE+ R ID+FGEQLR+AGYAY GSEPLYSG++GT+MHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRK  GG+R GEMERD+LLSHG ++LLHDRLMNCSD
Sbjct:  884 LFEKLEADGLPVVGTWVKEGDVLYSAVDSLTGEVEVGKHKESEVACVEAVRLLGLEGTSGATEPLDTVSITLRFPRRPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMSPDIIINPHAFPSRMTIGMLIESMAGKSGSLHGMYQDATPFSFHEDRRAIDYFGEQLRAAGYAYFGSEPLYSGLSGTLMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKRHGGIRFGEMERDSLLSHGTSYLLHDRLMNCSD 1147
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BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S1YVL7_TRICV (DNA-directed RNA polymerase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YVL7_TRICV)

HSP 1 Score: 395 bits (1015), Expect = 5.870e-135
Identity = 194/271 (71.59%), Postives = 221/271 (81.55%), Query Frame = 1 
Query:   16 HEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLSRAS--------ITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHE--EDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 798
            H+ L  DGLP VG W+  G+ +YC+VD LT     GKHKE E+ACV++VR LG       G SRAS        ITLRFPRNPVIGDKFSSRHGQKGVMSILWP  DMPF+E+G+ PDVIINPHAFPSRMTIGMLIESMAGKSGA+HG YQDATPF+FHE  +   +DHFGEQLR+AG+ Y+GSEPLYSGV+G +MHAD+++G+VYYQRLRHMVSDK QVRATG VN LTRQPIKGRK  GG+RLGEMERD+LLSHG AFLL DRL+NCSD
Sbjct:   39 HKNLEEDGLPRVGDWISEGEPMYCIVDALTDDSKTGKHKEKEKACVQSVRRLGQPVKVARGASRASANQDDAISITLRFPRNPVIGDKFSSRHGQKGVMSILWPQVDMPFSETGVCPDVIINPHAFPSRMTIGMLIESMAGKSGALHGMYQDATPFSFHESGDKLAVDHFGEQLRAAGFNYYGSEPLYSGVSGCLMHADLYMGVVYYQRLRHMVSDKYQVRATGQVNNLTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLLDRLLNCSD 309
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BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7R9U7R0_9STRA (DNA-directed RNA polymerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7R0_9STRA)

HSP 1 Score: 398 bits (1022), Expect = 2.580e-133
Identity = 182/263 (69.20%), Postives = 225/263 (85.55%), Query Frame = 1 
Query:   10 KLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 798
            K++E L +DGLP VG W++  D LYC+++   G+  V KHK+ E+ACV+T+R LG +G ++  L R S+TLR PRNP+IGDKFSSRHGQKGVMS+LWP EDMPF+ESG+SPDVIINPHAFPSRMTIGML+ESMAGKSGA+HG YQDATPF F+E+D  I++FGEQLR+AGY+Y GSEP+YSG++G  +  DI++GLVYYQRLRHMVSDK+QVR+TG V+ +TRQP+KGRK  GG+R GEMERD+L+SHG AFLLHDRLMNCSD
Sbjct:  247 KIYEELDFDGLPHVGQWLEQDDPLYCLLNTTNGESHVTKHKDVERACVQTIRLLGSDGKNKDKLRRVSVTLRIPRNPIIGDKFSSRHGQKGVMSVLWPQEDMPFSESGISPDVIINPHAFPSRMTIGMLVESMAGKSGALHGMYQDATPFQFNEKDTAINYFGEQLRAAGYSYWGSEPMYSGLSGLPLQVDIYLGLVYYQRLRHMVSDKAQVRSTGGVSPVTRQPVKGRKRGGGIRFGEMERDSLISHGTAFLLHDRLMNCSD 509
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BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S3V7B4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7B4_9STRA)

HSP 1 Score: 409 bits (1052), Expect = 4.090e-131
Identity = 198/267 (74.16%), Postives = 228/267 (85.39%), Query Frame = 1 
Query:   13 LHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLSR---ASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEE-DRV-IDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 798
            L+  LG DGLP VG+WV  GD +YCVVDELTG+   GKHKE E+AC++ VR LG     +  ++R    SITLR PRNPVIGDKFSSRHGQKGV+SILWP  DMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMAGKSGAMHG +QDATPF+FHE  D++ +D+FGEQL+SAGY+Y+GSEPLYSGV+G +MHAD++IG+VYYQRLRHMVSDK Q RATG VN LTRQPIKGRK  GG+RLGEMERD+LLSHG AFLLHDRL+NCSD
Sbjct:  889 LYPNLGEDGLPEVGTWVDEGDPIYCVVDELTGRTRPGKHKEKEKACIQQVRLLGQPSASKDKVNRDDIVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQTDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGMFQDATPFSFHESGDKIAVDYFGEQLQSAGYSYYGSEPLYSGVSGCLMHADLYIGVVYYQRLRHMVSDKYQARATGQVNALTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLHDRLLNCSD 1155
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BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S4JAV2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAV2_9STRA)

HSP 1 Score: 402 bits (1034), Expect = 3.650e-128
Identity = 201/282 (71.28%), Postives = 229/282 (81.21%), Query Frame = 1 
Query:    1 AATKLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLSRA--------------SITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHE--EDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 798
            AA  LH  L  DGLPM G WV  GDALYCVVD LTGK  VG+HKE E+ACV+ VR LG     +S  S++              S+TLRFPRNPVIGDKFSSRHGQKGVMSILWP  DMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMAGK+GA+HG YQDATPF+FHE  +   +D+FGEQL++AGY+Y+GSEPLYSGV+G +M AD+++G+VYYQRLRHMVSDK QVRATG VN +TRQPIKGRK  GGVRLGEMERD+LLSHGAAFLL DRL+NCSD
Sbjct:  922 AAPWLHRTLDEDGLPMPGEWVSEGDALYCVVDTLTGKDNVGRHKEKEKACVQCVRKLGSASAGQSMNSKSGGRGSSSAVPDEKISLTLRFPRNPVIGDKFSSRHGQKGVMSILWPQVDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKAGALHGIYQDATPFSFHETSDKLAVDYFGEQLQAAGYSYYGSEPLYSGVSGCIMQADLYLGVVYYQRLRHMVSDKYQVRATGSVNAVTRQPIKGRKQGGGVRLGEMERDSLLSHGAAFLLLDRLVNCSD 1203
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BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A6U3PLE0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PLE0_9STRA)

HSP 1 Score: 402 bits (1033), Expect = 4.500e-128
Identity = 199/276 (72.10%), Postives = 228/276 (82.61%), Query Frame = 1 
Query:   13 LHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPEGLDRSGLS------------RASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHE--EDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 798
            L+  +G DGLP VG+WV+ GD LYCV+DELTG     KHKE E ACV++VR LG E +  S  +            + SITLR PRNPVIGDKFSSRHGQKGV+SILWP EDMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMAGKSGAMHG +QDATPF+FHE  +   ID+FGEQL++AGY Y+GSEPLYSGV+G +MHAD++IG+V+YQRLRHMVSDK QVRATG VNQLTRQPIKGRK  GG+RLGEMERD+LLSHG AFLLHDRL+NCSD
Sbjct:  920 LYPNIGEDGLPEVGTWVKEGDPLYCVIDELTGADFAAKHKEKESACVQSVRLLG-EHISHSTTTQRQKMAPSQQDQKVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGLFQDATPFSFHETGDKLAIDYFGEQLQAAGYNYYGSEPLYSGVSGCLMHADLYIGVVFYQRLRHMVSDKYQVRATGAVNQLTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLHDRLLNCSD 1194
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BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Match: A0A7S3HBZ7_9STRA (DNA-directed RNA polymerase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBZ7_9STRA)

HSP 1 Score: 375 bits (963), Expect = 2.350e-127
Identity = 185/269 (68.77%), Postives = 215/269 (79.93%), Query Frame = 1 
Query:    7 TKLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQACVETVRALGPE--GLDR---SGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSD 798
            TK  E L  DGLP  G  V+ GD + C  D  TG+  V  HK+ E A V TVR +G    G  R   S L + SITLR+ RNPVIGDKFSSRHGQKG +S+LWP E+MPF+ESG+SPDV+INPHAFPSRMTIGML+ESMAGKSGA+HGT+Q+ATPF FHE+ +VID+ G+QL+ AGY YHGSEPLY+G+TG VM ADIF+G+V+YQRLRHMVSDKSQVRATGPV  +TRQP+KGRK  GG+RLGEMERDALLSHG AF L DRLMNCSD
Sbjct:   30 TKFCEDLDSDGLPFEGVSVKYGDPIVCFYDATTGEHKVINHKDQESAFVSTVRIIGSHSGGKTRGAKSNLRKVSITLRYRRNPVIGDKFSSRHGQKGTLSVLWPQENMPFSESGMSPDVLINPHAFPSRMTIGMLVESMAGKSGAVHGTFQNATPFRFHEDQKVIDYVGQQLKEAGYNYHGSEPLYNGLTGQVMQADIFMGVVFYQRLRHMVSDKSQVRATGPVTAITRQPVKGRKKHGGIRLGEMERDALLSHGVAFCLQDRLMNCSD 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UTQ0_HETAK1.200e-15079.55DNA-directed RNA polymerase n=1 Tax=Heterosigma ak... [more]
A0A7S2V1Y1_9STRA9.470e-14574.72DNA-directed RNA polymerase n=1 Tax=Fibrocapsa jap... [more]
A0A835YVF9_9STRA5.030e-14378.71DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
W7TET2_9STRA2.880e-13979.17DNA-directed RNA polymerase subunit beta n=2 Tax=M... [more]
A0A7S1YVL7_TRICV5.870e-13571.59DNA-directed RNA polymerase n=1 Tax=Trieres chinen... [more]
A0A7R9U7R0_9STRA2.580e-13369.20DNA-directed RNA polymerase n=1 Tax=Pinguiococcus ... [more]
A0A7S3V7B4_9STRA4.090e-13174.16DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A7S4JAV2_9STRA3.650e-12871.28DNA-directed RNA polymerase subunit beta n=1 Tax=O... [more]
A0A6U3PLE0_9STRA4.500e-12872.10DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
A0A7S3HBZ7_9STRA2.350e-12768.77DNA-directed RNA polymerase n=1 Tax=Spumella elong... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1758633..1762120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score392.9
Seed ortholog evalue1.2e-106
Seed eggNOG ortholog35128.Thaps36845
Preferred namePOLR1B
Model size800
KEGG rclassRC02795
KEGG koko:K03002
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007275,GO:0007565,GO:0007566,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009303,GO:0009553,GO:0009561,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0017126,GO:0018130,GO:0019222,GO:0019438,GO:0022414,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044706,GO:0045793,GO:0045815,GO:0046483,GO:0048229,GO:0048518,GO:0048856,GO:0050789,GO:0051704,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons6
EggNOG free text desc.DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
EggNOG OGs2XAVX@2836,COG0085@1,KOG0216@2759
EC2.7.7.6
Cds size798
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18196.1prot_Ecto-sp6_S_contig9.18196.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1758635..1762120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350535.686865-CDS-Ecto-sp6_S_contig9:1758634..17587901682350535.686865-CDS-Ecto-sp6_S_contig9:1758634..1758790Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1758635..1758790 -
1682350535.6997106-CDS-Ecto-sp6_S_contig9:1759520..17596441682350535.6997106-CDS-Ecto-sp6_S_contig9:1759520..1759644Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1759521..1759644 -
1682350535.7107642-CDS-Ecto-sp6_S_contig9:1760453..17605271682350535.7107642-CDS-Ecto-sp6_S_contig9:1760453..1760527Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1760454..1760527 -
1682350535.7215388-CDS-Ecto-sp6_S_contig9:1760782..17608451682350535.7215388-CDS-Ecto-sp6_S_contig9:1760782..1760845Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1760783..1760845 -
1682350535.7291145-CDS-Ecto-sp6_S_contig9:1761236..17614911682350535.7291145-CDS-Ecto-sp6_S_contig9:1761236..1761491Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1761237..1761491 -
1682350535.7366834-CDS-Ecto-sp6_S_contig9:1761994..17621201682350535.7366834-CDS-Ecto-sp6_S_contig9:1761994..1762120Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1761995..1762120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18196.1

>prot_Ecto-sp6_S_contig9.18196.1 ID=prot_Ecto-sp6_S_contig9.18196.1|Name=mRNA_Ecto-sp6_S_contig9.18196.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=266bp
AATKLHEGLGWDGLPMVGSWVQPGDALYCVVDELTGKVTVGKHKESEQAC
VETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILW
PAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDA
TPFAFHEEDRVIDHFGEQLRSAGYAYHGSEPLYSGVTGTVMHADIFIGLV
YYQRLRHMVSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLS
HGAAFLLHDRLMNCSD
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mRNA from alignment at Ecto-sp6_S_contig9:1758633..1762120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18196.1 ID=mRNA_Ecto-sp6_S_contig9.18196.1|Name=mRNA_Ecto-sp6_S_contig9.18196.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3488bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1758633..1762120- (Ectocarpus species6 EcLAC_371)
GCTGCGACAAAGCTCCACGAGGGGCTGGGGTGGGACGGGTTGCCCATGGT
GGGGTCGTGGGTGCAGCCCGGGGATGCCTTGTACTGCGTGGTGGACGAGC
TGACGGGGAAGGTTACCGTCGGGAAGGCAAGTTGTTGTTTCGGGTGTTAT
CGTTGTTTTTGTTATGTCTCTGCATACCGATTTGCTTTGTTCGATCTCGA
GTGTGGGGTGCAGCTCTAACTACAAAGAGCAAGAACACCAGTTGTCCACG
AGGTAGAGAAATCCATGGCAGCACTGCCTTCTGTCTTGCAAAAGAACCAA
CCTCTAGGACAATAATTGAAGATGAGGCTGGTTGAGCGGGGAGATGAGGC
GGCCGGAGGACAAAGAACCCGTCGTTTCACGCAGCATGATGGGAGCAGAA
GGGTGCCCGTAGCAGAGCTCCTACAAACGCTGCGGCTATTTCCGTTGGAG
TGCGACTCAAAGCGTCGCCACGCAGCAGCACACGCAACCGGGCTTGCAAT
GGGTATTCCAGCGCGCACAGATTCGAAGGAGAGTCTTCCTCTTGCCCCCG
CCACACACACAGTGAAACTCGCACACACGCCTCAAGAACACTTACGAAGC
CCCCCTCCCCCCCCTCCCCGCCGTCACAGCACAAGGAGTCCGAACAAGCC
TGCGTGGAGACCGTTCGGGCGCTCGGGCCGGAGGGGCTCGACAGGTCCGG
GCTCTCCCGCGCGAGCATAACGCTTCGGTTCCCTCGAAACCCGGTGATCG
GGGACAAGTTCTCGTCGCGGCACGGGCAGAAGGGCGTCATGTCCATCCTG
TGGCCGGCGGAGGACATGCCCTTCACGGAGTCGGGGCTGTCGCCCGACGT
GATCATCAACCCGCACGCTTTCCCGTCTCGGATGGTGCGTGCGTGTGCGT
GTGGGTCAGAATCGTTTGTTGTCGAGGAGAGCCGTGATGGCACTTAGTTC
GGGGGTCGGGGGGGGATTGTGATGGTGAATGTTTGGCCGGGTGGCGTGTT
TGTTGATGGGAAAGGTGGCTGTCTGAGCCGCACGTCTTGTTTCACGCTAG
GAGGGTGGTCGATGTGTCGGACGGGCTCGAGGGGTCTTGGTGGTGGTGGT
GGTGGTGGTGGTTTCGATGAGTACTGTACGTGTTGATGCCCTTGTGGTGA
AGGCGGTGGTAAAAGTGGTGTGGTGAAATGAGATACGACCGACTGCTCTG
TTGTGAACGGATGACGACCACCAATGGCTGCTTTCGTTGCCGTTGTTGCT
GTCACCACCTTGTTTTGTTGTACAGACTATCGGGATGCTTATCGAGTCCA
TGGCCGGCAAGAGCGGTGCCATGCACGGCACCTATCAGGTATGTTAGCAC
ATTACGACTGCTGATCGCCTGCTCTGCATCGGTGCATTATATTGCCTTCG
TAAATAGCATGTACAAACAAAACAATGGGAACCAACTCCCTTCCTCTTTT
CGGATCACTCCCGACACCCGCGCTTGCCGTGCAGTCTAAAAACCGCTGCC
TGCACTGATCCCCTGTTGCCCCCCCGTCGGGCTTTTTTCGTTTTTATTCC
GCGATGAACAACGGAACAATAATGCACACACACACACCAACAGGACGCTA
CTCCGTTCGCTTTCCATGAGGAAGACCGGGTCATCGACCACTTCGGCGAG
CAGCTGCGCTCCGCAGGGTAAGTGGGCACCCCTTTGTTTCGGACACGCTT
GTTGGACGTTTTTTTTGCGTGTGTTGAAGGGTGGCTTTCGCGTGTAGGTG
TAGTGTGCTAAGTTATTTGTCGTGCGAACGACCCCGTTGTTTATTTCTTT
TTAGCATGGCATTACTCGCGTGTTGTTTGTTTTTTTGTGTGTACGAATCC
GGTGATTCCGCCGTCTATTTTCCGTTGCCTGGAGGCTTGCAAGCGTTGCT
TGCCACAGCAGAGGGGCGTATCCCCTCGTCCTCTCGAGGAGTCTTCCAAT
AACGAGGCCGCCTTTGTGGAACGCATGTGTTGGATGTCACTCAACACGTT
GGCTCTCTTTTCGCCTGTCGTTTCGGGTTTCGAATATAATTACCGTGGCA
TGCGGGAAAAACTTGTGCTGATTGTTGTGCAGAACAACGGTACGGCGGCG
CTTGCCGTTTTGGGGTTTATAGAATTACCCCCGCATGCAGGAAAAGGAAC
AGGTATACATGCGTTTTGTCGTTTGGGGTTCCGCATAGAACGAATAACCA
TGGGTGGGAAAAAAAAGTGCTTGTCGTTTAGGTTTTCGTATCGAAATGAT
CACCGTGGGATACCTGCTGGATGACGGGATGCACACCTTTTGTTTGAATT
GGGCCGTCGATGCCGCGTGCATCACCATGCTCGTGCGTTGTTGCCATCAG
AAACCAGACTGCCACCCAACCAACCGAACGTAGACATCGATTCGGTGCCG
CTCATCAATGCAATTGTGCGGCCGGTTCATAGTTGGAGATAATGGAGCTT
ATTTTTTTTATTGTGGAATACAACAGGTACGCCTACCACGGGTCGGAGCC
CCTGTACAGCGGGGTTACAGGGACGGTGATGCACGCCGACATCTTCATCG
GACTGGTGTACTACCAGCGCTTGCGACACATGGTTTCGGACAAGTCCCAG
GTATGCATGACGACGCACGGTTATGGCGGTACGGCTGACGGGTTGCAATG
CGGGACAAGGGTGCTTGTACAAGTATTGAAGTCTTGTTTGCCCGATTTGT
TTTTGGTCGCCTTTGGTTGCGTGTTTGGTTTCCCACTTGCCGGAGCGGTG
CGACCGTGTGTGGACCTGTTGAGCTAAATAGTGGAGAAGGGGAGTAGTGA
GTGTGTGTTCCGCATCACGATTGGTTCATGGATGATGTGTCCAGCATGCG
GCACGTCCGTCGCTCCTGGGATTAGAACGCGGCGATCGGGTCCCAACGAT
AGTGTCGGGCACCGCCAACGAGAATACCACATCAGGTTTTCAGTAGCTGC
TCCGTGTCGACGATATCCAATTCGCGATGGCGTGTTTTCTGTCCGTCGTG
CCTTTTTTATCTTATCGTGGAGCGACCTATTTTATTGGGCAAAACATTTG
GTACCCCTGTAGGTATGTGTGTACGTTACGAAATATTGTCGTTCCGTACC
GAGGGGCTGCTCTGTCGATATGGTGCGCAAATTCCTTGGTGAAGGCAGCT
GTCTCTCGAGAGGGCGCAGATTACTGAACCACCACCACAGCTACCAGCAC
CCAAACACCGACATGTAACACTCCGAAATCCATTCTTATACACAACACCA
ACACCAACACCAACCAACAACACCAGCATCTGTATCAAACCCGACGACCA
CCTTCCCAACAACCCTCTATGCACCATCAGGTGCGAGCCACGGGCCCCGT
GAACCAGCTCACTCGGCAGCCCATCAAGGGCCGGAAGAACAAGGGCGGTG
TCCGCCTGGGGGAGATGGAGCGCGACGCCCTCCTGAGCCACGGCGCCGCC
TTCCTCCTCCACGACCGCCTGATGAACTGCTCCGACCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1758633..1762120-

>mRNA_Ecto-sp6_S_contig9.18196.1 ID=mRNA_Ecto-sp6_S_contig9.18196.1|Name=mRNA_Ecto-sp6_S_contig9.18196.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1758633..1762120- (Ectocarpus species6 EcLAC_371)
GCTGCGACAAAGCTCCACGAGGGGCTGGGGTGGGACGGGTTGCCCATGGT
GGGGTCGTGGGTGCAGCCCGGGGATGCCTTGTACTGCGTGGTGGACGAGC
TGACGGGGAAGGTTACCGTCGGGAAGCACAAGGAGTCCGAACAAGCCTGC
GTGGAGACCGTTCGGGCGCTCGGGCCGGAGGGGCTCGACAGGTCCGGGCT
CTCCCGCGCGAGCATAACGCTTCGGTTCCCTCGAAACCCGGTGATCGGGG
ACAAGTTCTCGTCGCGGCACGGGCAGAAGGGCGTCATGTCCATCCTGTGG
CCGGCGGAGGACATGCCCTTCACGGAGTCGGGGCTGTCGCCCGACGTGAT
CATCAACCCGCACGCTTTCCCGTCTCGGATGACTATCGGGATGCTTATCG
AGTCCATGGCCGGCAAGAGCGGTGCCATGCACGGCACCTATCAGGACGCT
ACTCCGTTCGCTTTCCATGAGGAAGACCGGGTCATCGACCACTTCGGCGA
GCAGCTGCGCTCCGCAGGGTACGCCTACCACGGGTCGGAGCCCCTGTACA
GCGGGGTTACAGGGACGGTGATGCACGCCGACATCTTCATCGGACTGGTG
TACTACCAGCGCTTGCGACACATGGTTTCGGACAAGTCCCAGGTGCGAGC
CACGGGCCCCGTGAACCAGCTCACTCGGCAGCCCATCAAGGGCCGGAAGA
ACAAGGGCGGTGTCCGCCTGGGGGAGATGGAGCGCGACGCCCTCCTGAGC
CACGGCGCCGCCTTCCTCCTCCACGACCGCCTGATGAACTGCTCCGAC
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