prot_Ecto-sp6_S_contig9.18184.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig9.18184.1
Unique Nameprot_Ecto-sp6_S_contig9.18184.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length278
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18184.1 vs. uniprot
Match: D8LGY5_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY5_ECTSI)

HSP 1 Score: 449 bits (1154), Expect = 1.630e-157
Identity = 219/220 (99.55%), Postives = 220/220 (100.00%), Query Frame = 0 
Query:    1 QVLGEKVQQRPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCSSFTDRRQRTSAAPAAEPPRA 220
            QVLGEK+QQRPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCSSFTDRRQRTSAAPAAEPPRA
Sbjct:    4 QVLGEKIQQRPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCSSFTDRRQRTSAAPAAEPPRA 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18184.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY5_ECTSI1.630e-15799.55C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 30..57
e-value: 8.7E-8
score: 41.9
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 32..56
e-value: 3.7E-5
score: 23.5
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 30..58
score: 14.831
NoneNo IPR availableGENE3D4.10.1000.10coord: 29..62
e-value: 1.4E-10
score: 42.4
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 29..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1688294..1692347 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18184.1mRNA_Ecto-sp6_S_contig9.18184.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig9 1688294..1692347 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18184.1 ID=prot_Ecto-sp6_S_contig9.18184.1|Name=mRNA_Ecto-sp6_S_contig9.18184.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=278bp
QVLGEKVQQRPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGTCPYGAGS
CAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRV
PHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRT
PHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCS
SFTDRRQRTSAAPAAEPPRAPPGGHGGRYARRVVYSSASSPAGRAAPASP
ASWAHAGTWQQPGGGGGGGGGGGRTGAN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf