mRNA_Ecto-sp6_S_contig9.18184.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18184.1
Unique NamemRNA_Ecto-sp6_S_contig9.18184.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18184.1 vs. uniprot
Match: D8LGY5_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY5_ECTSI)

HSP 1 Score: 449 bits (1154), Expect = 1.630e-157
Identity = 219/220 (99.55%), Postives = 220/220 (100.00%), Query Frame = 1 
Query:    1 QVLGEKVQQRPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCSSFTDRRQRTSAAPAAEPPRA 660
            QVLGEK+QQRPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCSSFTDRRQRTSAAPAAEPPRA
Sbjct:    4 QVLGEKIQQRPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCSSFTDRRQRTSAAPAAEPPRA 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY5_ECTSI1.630e-15799.55C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1688294..1692347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size834
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionZinc finger, CCCH-type
Ec32 orthologEc-14_001450.1
Cds size834
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350534.7142756-CDS-Ecto-sp6_S_contig9:1688293..16887061682350534.7142756-CDS-Ecto-sp6_S_contig9:1688293..1688706Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1688294..1688706 -
1682350534.7226899-CDS-Ecto-sp6_S_contig9:1689351..16895661682350534.7226899-CDS-Ecto-sp6_S_contig9:1689351..1689566Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1689352..1689566 -
1682350534.730335-CDS-Ecto-sp6_S_contig9:1689881..16899451682350534.730335-CDS-Ecto-sp6_S_contig9:1689881..1689945Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1689882..1689945 -
1682350534.7382064-CDS-Ecto-sp6_S_contig9:1690506..16905521682350534.7382064-CDS-Ecto-sp6_S_contig9:1690506..1690552Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1690507..1690552 -
1682350534.7489736-CDS-Ecto-sp6_S_contig9:1692251..16923471682350534.7489736-CDS-Ecto-sp6_S_contig9:1692251..1692347Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1692252..1692347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18184.1prot_Ecto-sp6_S_contig9.18184.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1688294..1692347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18184.1

>prot_Ecto-sp6_S_contig9.18184.1 ID=prot_Ecto-sp6_S_contig9.18184.1|Name=mRNA_Ecto-sp6_S_contig9.18184.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=278bp
QVLGEKVQQRPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGTCPYGAGS
CAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRV
PHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRT
PHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCS
SFTDRRQRTSAAPAAEPPRAPPGGHGGRYARRVVYSSASSPAGRAAPASP
ASWAHAGTWQQPGGGGGGGGGGGRTGAN
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mRNA from alignment at Ecto-sp6_S_contig9:1688294..1692347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18184.1 ID=mRNA_Ecto-sp6_S_contig9.18184.1|Name=mRNA_Ecto-sp6_S_contig9.18184.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4054bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1688294..1692347- (Ectocarpus species6 EcLAC_371)
CAGGTGCTTGGGGAGAAAGTCCAGCAGAGGCCGAGAGGCCGTCGACCCAG
ACGGCGATCGCGATCCGGTGACGGTGTCGTCCTCGCCAACCGAAAGGTGA
CCGGATTTACAAACTGCGGCTGAATGCAACGAACCCTCGATGTTGGCGGT
TGCCACTGCTGCTGCTGCTGCTCTGCTGCTGATGCTGCTGATGCTGCTGA
TGCTGTGTTCTTGGCTCCGCCTCAAGATCGTGGCGTGAGGCGTTGCATTG
GCTGGTTTGCCTTTGGTGCCAGTAGTATGCTTGGGTTTCTAGCTCAATGC
CTCTTCGTGGCCAGGGCTTTGGCACACTGGTTCGGGAGAGCTACAGATGG
ATAGAATTTTACCGTCTGCTTGTCTGCTTGTGTGTGTTTGTGCTGGTGCG
TTGTCCACATCGGTAAAGATGTAGGCTGCTCACCGTACTCCAGTACCACA
CACACTACAGGGTACGCTGTTGTGTATGGGTCCTTGCCTAGCTGGGCTGG
CAGTAACCTGGAAGATTTTTCTTCTACCAGCATGAGAGGTCGTGCACAAG
TTGACAGCTGCAGCACTGCTGTAGCTATCTACCGTCTCTGGTTTTGTGCC
ACAATGGATTGCCCACAGAAAAACGAGGTCGATCATCAGAAGAAATTGTC
GAGTTGTCGAGATCTTTTGCGGTTGTGCAGTCGTTCTCACACATCATCAC
AGCAGCACCGGGGTAGAGATACGCACATACGCACGTGTGTAGCACACCCG
TTCGTTTGCCAGCGAGATCGAGATGGATGGGTGTAAGAGAGAGTTTTCGC
GTTCTGATCCCGCCGCGGCGTTGCTGTCTTGATAGATGTTGTAGCACTGC
TTCGCGACTGATGCTGGTGTTGTGATAAAATACAAATATACATGTATTAT
GTAAATGGTCAAAATTCGACAACGGCAGTCAGTTCTAAATGGTTCATTAG
GCCTTTGACTTGCTTGTTGGCACGGTACAAGAGTGTCGCCGGGCTCTCCT
TGCGATACAAAGTGCCGGCCCACCCAGAAACATCAACAACTCAACGTGAT
CGAAAAGCCTTGCCCTGTCTCAACCATTGAGCACAGGCAAATTGTCGTAT
GTATGCATAGACTAGGCTAGAAACTACATTAATATGCGACCGGAACTCAA
ATTCCTTGCGCTATTGCTGCGCAGTAATTAGTCTAGGAGTTTAGGTTGGG
TTGGGTGTGTTTTTCAACAAGCAAGAGGGGGTCGGTTAAAGTACTGCTGA
ATACCTGAGGGTTTGTGTTATTGTTTCCCGTTATTTCCCATGTGTAAGCC
TCCGCGTCAGACAGCATAATAAATAGTCTGTACAGATGAACAGCACTAAT
AAGCAAATCGCCACGGTCTTACAAATAAACAGACACCACCAAGACTACAA
AAGACCCAAGGAGAGGAAAATGGACCCGTGTGACCTCGAACCGCAGTTGG
TCACTAGTCTGAGGTAGAAGATATTGGGTAATGATCTGGGATGCCTGGTC
ACAGAAAAGAATGGGCAAGCTGGTCAGCTCCTGCTGGCCACGCTGGTCGC
CTCGAACAACGACATATATATGCAGATTACATCGATCACCGCCGCCCGAT
CAAAGCTCCCGAATCGGAAGTGGCTTTTTCTTTTGCTATCTGTGTGTATC
TCTTGCCTGATCTTGTCCCGCTTTACGTCTCTGCGTCTGAGTTCCTACGC
CATTGCTCCACTGACTGCTGCTGCTGCTCCTGCTCCTGATGCTGCTGCCA
CGTCGTTGATGGTGCACTTGGGGCGATTGTCCTTTTTGCTTTCAGACGGA
GATTTGCCTTCACTGGCAGACGGGAACGTGCCCATACGGAGGTGAGTATT
ACACCCTACCACCATTTCCTGCTCGGAAATAAAGGCGCCATTGGGATTTT
CACTTTTGTTTCCGAAAGGACAAAATTTTAAAGCATGGTTGTGCGCAGCA
ACACGATGCATGATGTTGACTACGACTGGCTGTTGTTCGACAAGAAGAAC
TTGTGCGTAGAACAGTATTAGCTTCGACTTGGTTGTTTCGTGCATCTTCT
TTTCCACCCCTGAAATCGCGTATTTCGTCAACATGACCACCCGTCGAGCA
CGAGACAGACAGCCGTACTGGTGCCAGGGTTTGGGGGTGATCGACGTCGT
GGAGTTTCGTCATTTTCCTCAAAAGACGTCAAAAATAACGTGTGGAGAGG
GTCGAGTAGGGGGCAGTACATCATAGACATTGATTCTCGACATGTAGCAT
TGCAGTGTAGCCAACAGGGTAACGATGTTCGCTTTCGACCGCCTCAAAAT
AACGCCCGCCACGTTGTTGAGCTCCACCGGTCCATGGCCTTAATTTAACC
ACTCCGCTCTTCGTTCCGTGTGCATACCCCTGAACGATGACGCTGCTCGC
AGCGGGCAGCTGCGCCTTCGCTCACGGGCTTGGGGAACTACGGCACCCGA
CGCTCGACGATGAAGCGTGAGTGTACCATCAAAGTACAGCAGCAGTGACA
ACGATGGAATTTTGTTTTTGACAGTTGCCAGTTGTCGCCTACTGATCTCC
ACACCCATGCATTGTAGCTACTCGCCGGCCTTTGACCAACTCGTACGCGA
CACTCGTCGGTCCTTTCAACTGATCCCACCGTCATTTGCCTGGAACCGAC
CCTCGCCGCACTCTCAGCCACCTTTCTCCGCTCCCTGGCCCAGCAAACGT
CGTCAAACTCACTCTAAACCCAAATCACATCTCCACATGTATGTACCTTC
CTCTGGACCTCCTCTCCTCTTCTTCTTTAAGGATTGCGAGAAGCGTGAGT
GAAGACAGCGGCTCCTGCCCTTCGTCGCGAGACACGTCTCTTTCCTCTCG
GTGCGGCGGGGTTATCGGACGGGTGCCCCACTCCCCCTGTGAGCGCCGCC
TGCCTACCTTCGTGGACCTCAGCACCGGAAACACCCCCGTGAGAGGTTCC
CGGCACACCAGGCACTGGTCTTCCCCTGCCACGCGGTACCCCCCTGGTGA
GAGCAGTGATTAGAAAACCCGTTATCTTTCGGGGGAGGGTGCTCTTGGAA
GCGCATACCCTGCAATTCCGGGGCGGAGCGATATGCGCCGGGTTTTCGCC
GGCCCATAAGGCTGGTTATCATCCTTGCATTGCTGTGTCGAACCGGGTAC
GCCATGGGTTGGTTGGGCATCCCGGCTAACCAAACGTTTCACAGTCGGCA
GAGAACGGCGGGGAGAGGTTGCAAATGGTCATTTGTGCAGAAATGTCGGG
AAAGCGGAGGCAACTACTGTACCCAAGTGTCTTTCTGCTGCGCTTTCGAG
AGAGGATTTTCATGCTCACTGTCGGTGCGTCGTCACACGCGAAGGCTCTT
CCGCTGGCAGCATGGCGACGCCTCCTCCAGCATGAGTGGAAACGCTTTGG
ACAGACAGGACAGACCAAACGATCGCTTATTTCAAGGCCTCCGCGAGAGA
ATATGACGCGTTTTGGAGCACGACGAAAACACGTGTAGTAACACAGATGA
AACGGCCACCACCGAACTCTGACGACGATACTCCGATGTGTGTACAGCCG
AACCGCACAGTCAGCTCACCCAAAGCGCAGCAAGAAAATCTGTAACTTTT
TTTACTTGCGCTTTCGTGCGTGTGGCACGCCGGTACCCCAGGCTACTACT
CGAACGGCCAGCCCCGGACGCCACACCACCAGCGCAGCCGTTCCTACCCC
TCACCGTCGTCGTCAGACTTCTCCGACAGCTACGGTTTCGGCGTGGCCGT
GGACGCCCCCCCGGTGTCGCCGCAGTGCTACCGTCGGGAGGCCGCCCCCC
CCCGCTCCCCACGGTGCTCCTCCTTCACCGACCGCCGCCAGCGCACGTCT
GCCGCGCCCGCGGCCGAGCCGCCCAGAGCGCCGCCAGGGGGGCACGGTGG
AAGGTACGCGAGGAGGGTGGTCTACTCGTCCGCGTCGTCACCGGCGGGGA
GAGCGGCCCCGGCGTCCCCCGCATCGTGGGCGCACGCGGGCACGTGGCAA
CAACCGGGGGGAGGGGGGGGCGGCGGCGGCGGCGGCGGCCGCACGGGTGC
GAAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1688294..1692347-

>mRNA_Ecto-sp6_S_contig9.18184.1 ID=mRNA_Ecto-sp6_S_contig9.18184.1|Name=mRNA_Ecto-sp6_S_contig9.18184.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=834bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1688294..1692347- (Ectocarpus species6 EcLAC_371)
CAGGTGCTTGGGGAGAAAGTCCAGCAGAGGCCGAGAGGCCGTCGACCCAG
ACGGCGATCGCGATCCGGTGACGGTGTCGTCCTCGCCAACCGAAAGACGG
AGATTTGCCTTCACTGGCAGACGGGAACGTGCCCATACGGAGCGGGCAGC
TGCGCCTTCGCTCACGGGCTTGGGGAACTACGGCACCCGACGCTCGACGA
TGAAGCGATTGCGAGAAGCGTGAGTGAAGACAGCGGCTCCTGCCCTTCGT
CGCGAGACACGTCTCTTTCCTCTCGGTGCGGCGGGGTTATCGGACGGGTG
CCCCACTCCCCCTGTGAGCGCCGCCTGCCTACCTTCGTGGACCTCAGCAC
CGGAAACACCCCCGTGAGAGGTTCCCGGCACACCAGGCACTGGTCTTCCC
CTGCCACGCGGTACCCCCCTGGCTACTACTCGAACGGCCAGCCCCGGACG
CCACACCACCAGCGCAGCCGTTCCTACCCCTCACCGTCGTCGTCAGACTT
CTCCGACAGCTACGGTTTCGGCGTGGCCGTGGACGCCCCCCCGGTGTCGC
CGCAGTGCTACCGTCGGGAGGCCGCCCCCCCCCGCTCCCCACGGTGCTCC
TCCTTCACCGACCGCCGCCAGCGCACGTCTGCCGCGCCCGCGGCCGAGCC
GCCCAGAGCGCCGCCAGGGGGGCACGGTGGAAGGTACGCGAGGAGGGTGG
TCTACTCGTCCGCGTCGTCACCGGCGGGGAGAGCGGCCCCGGCGTCCCCC
GCATCGTGGGCGCACGCGGGCACGTGGCAACAACCGGGGGGAGGGGGGGG
CGGCGGCGGCGGCGGCGGCCGCACGGGTGCGAAC
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