prot_Ecto-sp6_S_contig9.18015.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig9.18015.1
Unique Nameprot_Ecto-sp6_S_contig9.18015.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length243
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18015.1 vs. uniprot
Match: D7G8H4_ECTSI (WD repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H4_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 3.220e-114
Identity = 183/198 (92.42%), Postives = 183/198 (92.42%), Query Frame = 0 
Query:    1 FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGXXXXXXXXXRAVVAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPDVLVTTALDATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVNRGAWLLTSYDDGSLXXXXXXXXX----CLLTLVNAAAAAAAADGAAVLPRPGAARLAVSRCGR 194
            FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGXXXXXXXXXRAVVAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPDVLVTTALDATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVN GAWLLTSYDDGSL             CLLTLVNAAAAAAAADG AVLPRPGAARLAVSRCGR
Sbjct:  108 FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGXXXXXXXXXRAVVAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPDVLVTTALDATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVNHGAWLLTSYDDGSLQTTGQVWIIQTGKCLLTLVNAAAAAAAADGVAVLPRPGAARLAVSRCGR 305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18015.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H4_ECTSI3.220e-11492.42WD repeat-containing protein n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 111..153
e-value: 52.0
score: 6.2
coord: 6..55
e-value: 310.0
score: 1.3
coord: 69..108
e-value: 4.3E-4
score: 29.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 71..108
e-value: 0.0012
score: 19.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 76..117
score: 13.215
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..232
e-value: 1.7E-18
score: 68.6
NoneNo IPR availablePANTHERPTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 51..119
coord: 71..218
IPR037783Transcription initiation factor TFIID subunit 5PANTHERPTHR19879:SF1CANNONBALL-RELATEDcoord: 51..119
coord: 71..218
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 95..109
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 76..162
score: 15.795
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:291317..294096 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18015.1mRNA_Ecto-sp6_S_contig9.18015.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig9 291317..294096 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18015.1 ID=prot_Ecto-sp6_S_contig9.18015.1|Name=mRNA_Ecto-sp6_S_contig9.18015.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=243bp
FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGGGGGRRKKQRAV
VAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPDVLVTTAL
DATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVNRGAWLLTSYDDGSLQ
VWIIQTGKCLLTLVNAAAAAAAADGAAVLPRPGAARLAVSRCGRIVAFAI
GARIKVIDFDRLADRSAAGGRSGHLAAAYLRQALHFVVSPTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR037783Taf5
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf