mRNA_Ecto-sp6_S_contig9.18015.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18015.1
Unique NamemRNA_Ecto-sp6_S_contig9.18015.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18015.1 vs. uniprot
Match: D7G8H4_ECTSI (WD repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H4_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 3.220e-114
Identity = 183/198 (92.42%), Postives = 183/198 (92.42%), Query Frame = 1 
Query:    1 FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGXXXXXXXXXRAVVAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPDVLVTTALDATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVNRGAWLLTSYDDGSLXXXXXXXXX----CLLTLVNAAAAAAAADGAAVLPRPGAARLAVSRCGR 582
            FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGXXXXXXXXXRAVVAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPDVLVTTALDATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVN GAWLLTSYDDGSL             CLLTLVNAAAAAAAADG AVLPRPGAARLAVSRCGR
Sbjct:  108 FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGXXXXXXXXXRAVVAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPDVLVTTALDATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVNHGAWLLTSYDDGSLQTTGQVWIIQTGKCLLTLVNAAAAAAAADGVAVLPRPGAARLAVSRCGR 305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H4_ECTSI3.220e-11492.42WD repeat-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:291317..294096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size729
Hectar predicted targeting categoryother localisation
Exons3
Cds size729
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350518.5970056-CDS-Ecto-sp6_S_contig9:291316..2915951682350518.5970056-CDS-Ecto-sp6_S_contig9:291316..291595Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 291317..291595 -
1682350518.6054454-CDS-Ecto-sp6_S_contig9:293208..2933811682350518.6054454-CDS-Ecto-sp6_S_contig9:293208..293381Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 293209..293381 -
1682350518.6131794-CDS-Ecto-sp6_S_contig9:293819..2940961682350518.6131794-CDS-Ecto-sp6_S_contig9:293819..294096Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 293820..294096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18015.1prot_Ecto-sp6_S_contig9.18015.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 291317..294096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18015.1

>prot_Ecto-sp6_S_contig9.18015.1 ID=prot_Ecto-sp6_S_contig9.18015.1|Name=mRNA_Ecto-sp6_S_contig9.18015.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=243bp
FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGGGGGRRKKQRAV
VAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPDVLVTTAL
DATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVNRGAWLLTSYDDGSLQ
VWIIQTGKCLLTLVNAAAAAAAADGAAVLPRPGAARLAVSRCGRIVAFAI
GARIKVIDFDRLADRSAAGGRSGHLAAAYLRQALHFVVSPTT*
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mRNA from alignment at Ecto-sp6_S_contig9:291317..294096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18015.1 ID=mRNA_Ecto-sp6_S_contig9.18015.1|Name=mRNA_Ecto-sp6_S_contig9.18015.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2780bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:291317..294096- (Ectocarpus species6 EcLAC_371)
TTTTGGTGTGCGAAAGACTTCACCTGCAAGAGGACCATCCGGAGCACCTT
CGGGGTAAAGATTCTTATGGTGTCCGCAAGAGGCAAGTTCGTCTTCGTCG
CGGGGGAGCAAGGCGGTGGCGGCGGTCGTAGGAAGAAGCAGCGCGCGGTC
GTCGCCGTGTGGGACGGTCGCAAGCGCGGCAAGATTTATCCCGGGTTCGG
CGGAGAGAGAGACCCCACGCGGCTGCTGACGGGGCACGGAAGGCCAATTC
GATCTCTGTACACACCACACAACCCAGGTAAGCTTGCCTAAGAGGCACGA
GGGTGAGTTGCTCTGTCTGGCGGCTACGTCTGGAGTAAGCGGAGCGACAT
CCAAGAACCTCCTTTTCTTTAGGAGCGTTCAAGTTTGAATCATCTGTGCG
GTCGAATTGAGCCTGGCGAGTACGGTTGATGCTGGCCGCAGGGCCGCTCG
ATGTACAAAGGCGTGTTTCGAGGCGAATCGCTCATTGGCCTCTTCTCGTC
GGGGTTGCGAATGACTTTCATTGTGGTTCGGGCGAATCGTGGGGCATCCC
TAGGAAGTTTCTTGTGTTTTGGGATCGTAACGGTTTCTACCAAACCTCTC
TTGATACTTGCCAACAGCGCGCGCCCCCCCAAAAGCAACATGAGCGATAT
GCATATATTTAACAGTGCGTGGGAATCACTTCGGTTTTTCTGTTTGTTTG
GTCGTTCCCCATAAGATGTCCTGGTTACGACGGCGCTCGACGCGACGGTC
AAAATTTGGGACGTCCCGACCGGCACGTGCACGAAGACGATCTGGAGCAA
AGGGGGGCTGCAATCGCCGCTCTCGAATGCGGGTCTGGTGAATCGCGGCG
CTTGGCTTCTGACGTCTTACGACGATGGATCTCTTCAGGTGCGTGCGCAT
GTGTGTTTCGTTGGCTGTAGCCTCGACCATGGCGATGAACGGCTGACCGA
CGGCAGACAACATGTCAGGTAAGTTCTAGGTCAAAACCTTCGGAACAAGT
AGTAGTCGTTCGTGGTCACCGCAAAACTTTCGGAACGTACATCTCGACGA
AGACTGGACTTGCTCGTATTGTACATCTAGCGGGAAAGGTCGCCACACAA
TCTCTTTGAGCGCACGTGCGTGTAATACCCAGTACTATGTATGTGGCATC
ATAGATACGCCTCCCGTCGAGAGAGTCATGAGTGTGGGCAGTGCATCGGG
TCGGAAGGAATGGTCGTCCAACGCCGGCGTTTGTTTAGTAGCCCCATCCT
TTGTATCAGCTTCTTGTGTCCTTGTGTTGCGAGACTCGCGGGTAGAAGCA
AACAGGTTGCTCGGCTGGAGCAACCATAGACACATGGGGGTTGTGGTCGT
GATGTGGGCTGTTGAGACTTAATTGTTTTTCATTATTTCGTTAAACATTC
AACTGCTACCAATGGACTCCCGATTAAACTGCCCTGGTTGGTGCTTGCAA
TTCCATCAACGTTGTTCGCGCAACGACTGGAGCGACATGAGTTTCTTGCC
CCCCCTTCCCCGCCCCCCCGGTGTTTGTCATCGGGATTGGGTTTTCGTCG
CTTGGCACCGACGTTGTAAAACAAGCCCCCCCCCTAGGCGTTTGCCATCG
GGATAGCTGTACTGGGGAGTAGGAAGTGGTTTGAAAAGGCGGGAAGGGAT
ATCGTTAGGATGGACCGACTAGGGAAGACATTTTTGAGCCACCTTTGGCA
AAGCAGGAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAACAATG
CTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACCGCTAAGGCATGC
AAAACATAAGAGTGCGCCCCCCCCCCTAGGTGTTTGCCATCGGGGTTGGG
TTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCACTTCGCGA
ACTCGGCAACCAGGTTATCACCGCTTTTTTTTGTACCTCTGTTTTTTTTT
TTGCGGTAACCATAATGGTGGTCGAGTAGATCATGTTGTGCAGGGTCGAG
AACCCTCACTCCGCGCAACGGGGGATGATCGCACCACGTTGTGTTAAAAT
GGTCAAGCATCCTCGAGGCAGTTACACAGTGCTTATAAGTGTCTCTGGAA
GTGAAAGCACCAGAAAATAAATCAAGTTATACGCAGCTGTCATCCGTACG
CAAGGCAGTAAGCACAAGATGCCGAACACCCTTAGCAGGATGCAGCGCAC
CCTTCATGCGATTCGCCCAATACCTCACGGCGCTTCGCGCTTGGTGATGT
GAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGG
GATGCGAGGTCAATGGTCAAACGACTACGGCATGCACGACTATGAGTACC
CCCCCTCCCCGATCCAGTTCTCACTCACTTTAGGCTTCGCCCTTCTCTGA
TATCAATCGTGTTTCCCACACTTACTAGAACTACGTGTCCTAACCCTAAC
CCTACTACTTTGTACACGACACTCTGTTTCTTCTCCCAATACCGCCACTA
GGTGTGGATAATCCAAACTGGTAAGTGCCTCCTAACGTTGGTCAACGCAG
CAGCAGCAGCAGCTGCTGCCGACGGGGCGGCGGTTTTGCCAAGACCTGGC
GCGGCGCGCCTGGCCGTATCCCGTTGCGGCAGGATAGTAGCGTTCGCGAT
AGGCGCACGCATCAAGGTCATAGATTTCGACAGGCTTGCCGACCGCAGCG
CGGCGGGGGGGAGGTCGGGGCACCTGGCGGCTGCATACCTTCGGCAAGCG
CTTCATTTCGTCGTTTCGCCGACGACGTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:291317..294096-

>mRNA_Ecto-sp6_S_contig9.18015.1 ID=mRNA_Ecto-sp6_S_contig9.18015.1|Name=mRNA_Ecto-sp6_S_contig9.18015.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:291317..294096- (Ectocarpus species6 EcLAC_371)
TTTTGGTGTGCGAAAGACTTCACCTGCAAGAGGACCATCCGGAGCACCTT
CGGGGTAAAGATTCTTATGGTGTCCGCAAGAGGCAAGTTCGTCTTCGTCG
CGGGGGAGCAAGGCGGTGGCGGCGGTCGTAGGAAGAAGCAGCGCGCGGTC
GTCGCCGTGTGGGACGGTCGCAAGCGCGGCAAGATTTATCCCGGGTTCGG
CGGAGAGAGAGACCCCACGCGGCTGCTGACGGGGCACGGAAGGCCAATTC
GATCTCTGTACACACCACACAACCCAGATGTCCTGGTTACGACGGCGCTC
GACGCGACGGTCAAAATTTGGGACGTCCCGACCGGCACGTGCACGAAGAC
GATCTGGAGCAAAGGGGGGCTGCAATCGCCGCTCTCGAATGCGGGTCTGG
TGAATCGCGGCGCTTGGCTTCTGACGTCTTACGACGATGGATCTCTTCAG
GTGTGGATAATCCAAACTGGTAAGTGCCTCCTAACGTTGGTCAACGCAGC
AGCAGCAGCAGCTGCTGCCGACGGGGCGGCGGTTTTGCCAAGACCTGGCG
CGGCGCGCCTGGCCGTATCCCGTTGCGGCAGGATAGTAGCGTTCGCGATA
GGCGCACGCATCAAGGTCATAGATTTCGACAGGCTTGCCGACCGCAGCGC
GGCGGGGGGGAGGTCGGGGCACCTGGCGGCTGCATACCTTCGGCAAGCGC
TTCATTTCGTCGTTTCGCCGACGACGTAA
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