prot_Ecto-sp6_S_contig89.17957.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig89.17957.1
Unique Nameprot_Ecto-sp6_S_contig89.17957.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length859
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig89.17957.1 vs. uniprot
Match: D8LK95_ECTSI (KH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK95_ECTSI)

HSP 1 Score: 547 bits (1409), Expect = 8.210e-185
Identity = 355/395 (89.87%), Postives = 357/395 (90.38%), Query Frame = 0 
Query:  465 DVAGDIAQWAADNSRGGEFTKVLEAVRRDSGVVSVDTRAVLKQGRGKGARAQIDKVHVDIRAATSAQARVARALLQTHFKSRSELLRLEHARRSMAGSLSAFEARQNPHQALCTREVSQGLRVQFASRPEWIGLLVGKAGSRIRGLRKSTGCSIEVIDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SCRVVICGPDAGSVQRAREQMELTEIRIAVNPQQATVLGRLPRTKLLDLRQQSQCMVVDLLQSGSACQRIQQXXXXXXXXXXXXXXXXXXXXXTKNDSSPSGAVTGVMSVRVIGPRPTVDSARLLLGVVLEYMDRERELREGDNVVRGKLLDMQASFGHPGTARPAAWAAKAGRGGYGRRAPPPGTSPNSTGEHREANQRD 857
            DVAGDIAQWAADNSRGGEFTKVLEAVRRDSGVVSVDTRAVLKQGRGKGARAQIDKVHVDIRAAT AQARVARALLQTHFKSRSELLRLEHARRSM GSLSAFE           REVSQGLRVQFASRPEWIGLLVGKAGSRIRGLRKSTGCSIEVIDGXXXXXXXXXXXXXXXXXXXXXXX            SCRVVICGPDAGSVQRAREQMELTE+RIAVNPQQA VLGRLPR KLLDLRQQSQCMVVDLLQSGSACQ  Q XXXXXXXXXXXXXXXXXXXXX        GAVTGVMSVRVIGPRPTVDSARLLLGVVLEYMDRERELREGDNVVRGKLLDMQASFGHPGTARPAAWAAKAGRGGYGRRAPPPGTSPNSTGE+REANQRD
Sbjct:   73 DVAGDIAQWAADNSRGGEFTKVLEAVRRDSGVVSVDTRAVLKQGRGKGARAQIDKVHVDIRAATPAQARVARALLQTHFKSRSELLRLEHARRSMEGSLSAFE-----------REVSQGLRVQFASRPEWIGLLVGKAGSRIRGLRKSTGCSIEVIDGXXXXXXXXXXXXXXXXXXXXXXXHKAARGQPPAPSSCRVVICGPDAGSVQRAREQMELTEVRIAVNPQQAAVLGRLPRAKLLDLRQQSQCMVVDLLQSGSACQGRQXXXXXXXXXXXXXXXXXXXXXXXXXX----GAVTGVMSVRVIGPRPTVDSARLLLGVVLEYMDRERELREGDNVVRGKLLDMQASFGHPGTARPAAWAAKAGRGGYGRRAPPPGTSPNSTGENREANQRD 452
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17957.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK95_ECTSI8.210e-18589.87KH domain-containing protein n=1 Tax=Ectocarpus si... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 723..747
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 584..677
score: 10.148
IPR004087K Homology domainSMARTSM00322kh_6coord: 583..682
e-value: 8.0E-4
score: 28.7
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 594..678
e-value: 1.5E-5
score: 24.7
IPR021950Transcription factor Spt20PANTHERPTHR13526TRANSCRIPTION FACTOR SPT20 HOMOLOGcoord: 18..752
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 593..677

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:467222..471516 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17957.1mRNA_Ecto-sp6_S_contig89.17957.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig89 467222..471773 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig89.17957.1 ID=prot_Ecto-sp6_S_contig89.17957.1|Name=mRNA_Ecto-sp6_S_contig89.17957.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=859bp
MTDHAASSATQGEVHKTQPERSGYKVRRNHASNKRDGCNGNNPLQNGPGS
ADGRGGNKTKKTGELGHAAPISSVPPPSSGTSPSSLLKQRPPLSADSCVE
SGRGASRRPAAGGRAKTTAEHLSSHHVKNDVKTLATGSTAMSSCADQITQ
AAVHNTTTPDSRASLDPCGGLKRDSSQQRILRLPRTRGHGASPQDDSAED
GQWSDASRGPLVRSSASTVHGSNQHQQRQQLQKQQEKKQRQPKKHGSKKR
TPKNQHQQEQQLQKQQEEPKREAQAVGTSKDSISPHTPYHQRGKEERTEP
AGTAKGLEFHELSPATSTDYEERSPFLEKNAGGRKNGDAGVDSIDSLCSS
LLEILAESEDVSSKAELATLALGWRNKFLPTGKPLLEETTPTTSAVSSTS
SSANSRKSDESPAGSILPTPQKLADHGQRDREKKRTRNRKKEEKKGNDGG
GGGGGGGSLVLDSVDVAGDIAQWAADNSRGGEFTKVLEAVRRDSGVVSVD
TRAVLKQGRGKGARAQIDKVHVDIRAATSAQARVARALLQTHFKSRSELL
RLEHARRSMAGSLSAFEARQNPHQALCTREVSQGLRVQFASRPEWIGLLV
GKAGSRIRGLRKSTGCSIEVIDGGGGGGGPDGSCGAGGGGGGGGHKVAGG
QPPASSSCRVVICGPDAGSVQRAREQMELTEIRIAVNPQQATVLGRLPRT
KLLDLRQQSQCMVVDLLQSGSACQRIQQQQQQQQQQQQQQQQQQQNAPPT
KNDSSPSGAVTGVMSVRVIGPRPTVDSARLLLGVVLEYMDRERELREGDN
VVRGKLLDMQASFGHPGTARPAAWAAKAGRGGYGRRAPPPGTSPNSTGEH
REANQRDN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR021950Spt20
IPR036612KH_dom_type_1_sf