prot_Ecto-sp6_S_contig89.17934.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig89.17934.1
Unique Name	prot_Ecto-sp6_S_contig89.17934.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	161

Homology

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BLAST of mRNA_Ecto-sp6_S_contig89.17934.1 vs. uniprot
Match: D8LKF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF3_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 3.880e-61
Identity = 157/162 (96.91%), Postives = 157/162 (96.91%), Query Frame = 0

Query:    1 MQVRKGWMLALAFLCSCLLNPGVASSSSSRATPSPAXXXXXXXXXXXXXXXXXXXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXXXX--TSRGTVVAWAFFTVLLGVALLMFLYNREQNKRLRAQRGDFLRQSLASNDTMNPPYHQAEPLPGHKPDPTMSSF 160
            MQVRKGWMLALAFLCSCLLNPGVASSSSS ATPSP XXXXXXXXXXXXXXXXXXXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXXXX  TSRGTVVAWAFFTVLLGVALLMFLYNREQNKRLRAQRGDFLRQSLASNDTMNPPYHQ EPLPGHKPDPTMSSF
Sbjct:    1 MQVRKGWMLALAFLCSCLLNPGVASSSSSSATPSPXXXXXXXXXXXXXXXXXXXXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXXXXXXTSRGTVVAWAFFTVLLGVALLMFLYNREQNKRLRAQRGDFLRQSLASNDTMNPPYHQPEPLPGHKPDPTMSSF 162

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig89.17934.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig89.17934.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LKF3_ECTSI	3.880e-61	96.91	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 9..19
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 32..92
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..31
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 93..112
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 20..31
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..8
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 113..160
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..17 score: 6.0
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..25 score: 0.822
None	No IPR available	TMHMM	TMhelix		coord: 92..114
None	No IPR available	TMHMM	TMhelix		coord: 7..24

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig89	contig	Ecto-sp6_S_contig89:260911..264508 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig89.17934.1	mRNA_Ecto-sp6_S_contig89.17934.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig89 260902..264889 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig89.17934.1 ID=prot_Ecto-sp6_S_contig89.17934.1|Name=mRNA_Ecto-sp6_S_contig89.17934.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=161bp
MQVRKGWMLALAFLCSCLLNPGVASSSSSRATPSPASTPSPALTPSPGAT
PSPSGTPAPPSATPSPGGSSSSSSSSSSSSSSSSSSGTSRGTVVAWAFFT
VLLGVALLMFLYNREQNKRLRAQRGDFLRQSLASNDTMNPPYHQAEPLPG
HKPDPTMSSF*