mRNA_Ecto-sp6_S_contig89.17934.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17934.1
Unique NamemRNA_Ecto-sp6_S_contig89.17934.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig89.17934.1 vs. uniprot
Match: D8LKF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF3_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 1.950e-59
Identity = 157/162 (96.91%), Postives = 157/162 (96.91%), Query Frame = 1 
Query:   10 MQVRKGWMLALAFLCSCLLNPGVASSSSSRATPSPAXXXXXXXXXXXXXXXXXXXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXXXX--TSRGTVVAWAFFTVLLGVALLMFLYNREQNKRLRAQRGDFLRQSLASNDTMNPPYHQAEPLPGHKPDPTMSSF 489
            MQVRKGWMLALAFLCSCLLNPGVASSSSS ATPSP XXXXXXXXXXXXXXXXXXXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXXXX  TSRGTVVAWAFFTVLLGVALLMFLYNREQNKRLRAQRGDFLRQSLASNDTMNPPYHQ EPLPGHKPDPTMSSF
Sbjct:    1 MQVRKGWMLALAFLCSCLLNPGVASSSSSSATPSPXXXXXXXXXXXXXXXXXXXXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXXXXXXTSRGTVVAWAFFTVLLGVALLMFLYNREQNKRLRAQRGDFLRQSLASNDTMNPPYHQPEPLPGHKPDPTMSSF 162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF3_ECTSI1.950e-5996.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:260902..264889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size873
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionProtein of unknown function DUF1180
Ec32 orthologEc-16_002750.1
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350509.5314374-UTR-Ecto-sp6_S_contig89:260901..2609101682350509.5314374-UTR-Ecto-sp6_S_contig89:260901..260910Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig89 260902..260910 +
1682350509.573314-UTR-Ecto-sp6_S_contig89:264508..2648891682350509.573314-UTR-Ecto-sp6_S_contig89:264508..264889Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig89 264509..264889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350509.5430086-CDS-Ecto-sp6_S_contig89:260910..2609751682350509.5430086-CDS-Ecto-sp6_S_contig89:260910..260975Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 260911..260975 +
1682350509.553216-CDS-Ecto-sp6_S_contig89:263605..2638781682350509.553216-CDS-Ecto-sp6_S_contig89:263605..263878Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 263606..263878 +
1682350509.562911-CDS-Ecto-sp6_S_contig89:264363..2645081682350509.562911-CDS-Ecto-sp6_S_contig89:264363..264508Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 264364..264508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17934.1prot_Ecto-sp6_S_contig89.17934.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 260911..264508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17934.1

>prot_Ecto-sp6_S_contig89.17934.1 ID=prot_Ecto-sp6_S_contig89.17934.1|Name=mRNA_Ecto-sp6_S_contig89.17934.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=161bp
MQVRKGWMLALAFLCSCLLNPGVASSSSSRATPSPASTPSPALTPSPGAT
PSPSGTPAPPSATPSPGGSSSSSSSSSSSSSSSSSSGTSRGTVVAWAFFT
VLLGVALLMFLYNREQNKRLRAQRGDFLRQSLASNDTMNPPYHQAEPLPG
HKPDPTMSSF*
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mRNA from alignment at Ecto-sp6_S_contig89:260902..264889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17934.1 ID=mRNA_Ecto-sp6_S_contig89.17934.1|Name=mRNA_Ecto-sp6_S_contig89.17934.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3988bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:260902..264889+ (Ectocarpus species6 EcLAC_371)
GATACCACCATGCAGGTTCGGAAAGGATGGATGCTGGCACTGGCATTCTT
GTGTAGCTGTCTCCTCAACCCAGGGTGAGTCTAGAGGCCGCGTACCTCGT
TGAATGAGTATTGCACGAGCTCCTGAATTTTGAGCGTGCGGTTCAATTCA
AAACCGTGCACTGCTTCACTGCTTTCGTCCGCTCTCTGTGACCGACGGTG
CTATCGTGCACCCAGGGGGCGAAAGATTTGCGAGCGAACAGTACCGTTCA
CATTCCATTACTATCGAATGGCGAGCGACAATACCATCAATGTCTTCTGT
CTTGACACGTCTTCACCCATGATGCTGTATGTGTGGTGTCGGGAAATCGC
GGGATATTTATGTGTGCAGTTGCTCTCAACCCTGTACCGCCGTCTCACCC
GCTATTGGAGCACCCGCTTATCACAACGTAAATATCCATCTCTTCCTCTG
CCCTCGGCTGTACTCTAGCTCGAAACTGCACACGCTTGCCTACCCTCCTT
TGATTTGTTTTTTTATGGTGCATCAACACTCTTTCGAGACCTGAGACCAA
CCAACCATCTTTAGCGTGCGGTGATATTCGGCGTTCCACCGTCGGTGTTT
TACTCTACAAAGAGGGTGAGGTGGACTAAAGTAGCTTCTTTGTGGAAGAA
AGTACCTGCAGTCTGCAGTAGGCTCGTGCGTTGTTACCATTGGCTCGTTT
ATACCACACAACAACAGTGTTGAGTTGGGGGGCGCCAGGTGTGATTTACA
GAGAGGGGAGGGGGGGGGGTGTTATCATCAGCTATAGTCAGGGGGGTGTT
ATAATCAGCTACATTTGCAGCAGCGCAATAAACCTCTCTCTGTTCCTCTC
TCTGGTTCGAGCTTTGATCTAAGGCAACTCCAAAGCGTGTGATTTGTGAC
CAGACTAGCACACGGAAGGCACAGGTGGCACCCTAAGCCCTCGCACTCAA
GTATAGAGAGGTTTACAGCAGTACATGCACATCAATGGTGGTGTCTAGCA
GCGTGTTGTAGTGCCTCTTGTCCTCTCCCTCTCGCTGATGACAACAAACG
ATGCCGGTCACAACACGCACAACAACCCAACCGACGCTTCTACTCCTCTC
CTTTCGCTCCCTCCGCCGATAGTATTTATAGGGCACACATTCCCGCCTCG
CTCTGCCGGTGGTGTGTGTGTGTCTCCCGCCCCCCTTGTCCATCAGCCCT
GTCTCTGTGTAGCGTATGTCTTGCCACAGCACACCGGCGGAACCAAAACA
AATCACACCTGCCTGTTTTTTTTTTGACGCGTGAAACCTAGATTTATATG
AGCACAGATGCTGTGCTTTCTCGACGCACCGACCACGGATTGAAAAGGTA
GCAGTTGGGGACAGCTCGGGCAAAATGCTTCTTGTGCACAAGTTTTAGAT
CGCAATTTGGTGCCTAGCTGGTGAAATGGGCTCCAATCTCCTGTGTATTC
ATCGCCGCACAGACAGACAGACGCCGGACACCGGACACCCTCAGTGCAAA
AGTGCCCCCCCCCGTGCGGGATATCGTTAGGATAGACAGATTAGGGAAGA
TATTTTTGAGCCACCTTTGGCAAAGTAGGAAGGAACGATTGGCCATCGGT
GATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAA
TGGTCTAACCGCTAAGGCATGCAAAACATAAGAGTACCCCCCCCGTGCGG
CCTTTCTTGTATTTTCATGTACGTACATGTACATCAAGATCCCTCTAAAC
AGATTTTTTTTGGTTAAACAAAAAAGCACCCCTATGGGCCGCTCTTCATA
GAAATCTACTTATTAATTATGTCAATTAATAGTTGTGATTTTTTGCCTCT
GTTGTGTATAACCGATGTGATAACACATGAACCCAACACTCCTTACTAGA
GTCTATACCATGCCCTAGTTTAGTGTTGTATAGACCTTGCGCCCGCCATA
ACGCGTGAAGGATTACTCACACCCATCTTAAAAGCATAATGCTCAGCGTT
TTTTCCTATTCTGCCGCGGTTGCGAATGGACCGTTTTCCAGCTGGTATTG
ACAACGTCCAAGAGAGCATAACATCCCGCCGTGCTGATGTTGTGGGATTG
TGGCAGTTGTTTTATGCAGGCTGGTTTACGTATCACCTACCGACTACCCT
GAGTCACAAATCGGGCTCAGCCTAGCTTTCCTACGCGAAGCCAAGGCCGA
GCAATAGCTTATGGCTGTGGAGTACGCGCCGAGGCAGTGTACTTGTAGGC
TTCTTTTGTTTTGATATAACATGGCCCGCTATTCTTGTCTCGAGCTTGGC
AGTGTGGGAAGAGCTTGGCAGTGTGGAAAGGTCGATGGTCGATACTCTTC
ACGCCCCGTCCAATGCAGCCTGCTCCTGGACGATCGGCCTCCATTTTGAG
CTGTTTTTTCGACCAGAGTAGAACACACTTGACAAAACACTAGAAACTCA
TCACTATTACGCTGGGCTCTACCTGAACTAGGTGCAGCAGTAGTCTTTCT
CTTGGCCGTGGATCCAAAAGGAAGAGACTTTTCACCCTGTAGTTGTCCCA
TTGGACAACATCGACTGCTGCCTGTGCTGTGTTCGGTAAACCAGTTTGTA
ACGCATCTCCCGCAACCATCGACAACTTTTCCCTCTGCACGGTATCTGCG
ATACTGAAACATCGAAACCAATACTCCACATAACCCTGTTCTCTCTTTGA
ACAGGGTGGCGTCATCATCAAGCTCGCGTGCCACCCCCTCCCCCGCGTCG
ACGCCGAGCCCAGCGTTGACACCCAGCCCCGGGGCGACACCAAGCCCCAG
CGGCACGCCGGCACCACCCAGCGCCACGCCATCCCCCGGAGGGTCGTCTA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGC
ACAAGCAGGGGTACCGTGGTGGCGTGGGCGTTCTTCACCGTGTTGCTCGG
CGTGGCGCTATTGATGTTCCTGTACAAGTGAGAAAACGGCCGCTAGCGTA
GACGAGAGGAGAGTGGTGGGTTGGTTAAAGGTGTTAGCTGGGTATGGGTT
GCTTGATTGATTTCGCGCGTTCTGAATAGTAGGAGGTGGGTGTTGTGGAG
GAGCGTCGCGCAGAGGTCGCCGCGGCTACGGTGGCTTCTTGTTTTTCGGG
CGTGGCTCTGGCAAGTGGCAAGATAACGGCGAGGCGTCCGGGGGGAGGGC
GCGAGGGAGAGATATGGAAGCAGAAGAGCAGAATACGCCGCACTTGAGCA
TGGAGACAGGGAATAGTCTTGTCGGAGGGAGGCTAGAAGAGAGAGTCAAA
CGGGGGTGTTGGGAAGAGGCGATTTCAATTTTGAGCTCGTAACGTAGAGG
CACACGAACCGCTGCTGATAACCTCTCTCACCTCCTGGCCGCCCTTCCGC
CCGCCCCTTTGCCCCCCTTGCCTTTATGTTGTCCTCCCCGATGACGAACG
CAAACATTTCAGTCGCGAGCAAAACAAGAGATTGCGGGCACAGCGCGGGG
ATTTCCTTCGACAGAGTCTGGCGTCGAATGACACCATGAATCCACCGTAT
CACCAAGCAGAGCCACTACCGGGGCACAAGCCGGATCCCACCATGTCTTC
GTTTTAAAATCGTACATATGCATACTAGTGTAGTTCGGACGTTTCCCTGG
TGCCAACATGGCTGATTTGCGGACTGTGTCTGGGTGGTTTGGTGAAGTGC
TGTATTTCGTTGATCGTTCGGTTTGTCGAGTTCAACCCGTTAGGCAAATG
AAGACACCCAACAGAATACCCATTGGTCGAACTTCAGTAATGCTATCGTG
CTTGCGTGGTTGCTCTCTTTGCTACCACTTTTTATTCCCTGCGGTGTGTT
GGCCGCCTCTTCGTTTACTACATTGTTGTCGTGGTGCCATCCAGTATTTT
TTATACTTCTTTACCATGTTGATGCTTTGCTGGCAGCCTGTGGCATCGTG
GTCGCGGTGAACCAAGCAGATTTCATCCCATGTTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:260902..264889+

>mRNA_Ecto-sp6_S_contig89.17934.1 ID=mRNA_Ecto-sp6_S_contig89.17934.1|Name=mRNA_Ecto-sp6_S_contig89.17934.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:260902..264889+ (Ectocarpus species6 EcLAC_371)
ATGCAGGTTCGGAAAGGATGGATGCTGGCACTGGCATTCTTGTGTAGCTG
TCTCCTCAACCCAGGGGTGGCGTCATCATCAAGCTCGCGTGCCACCCCCT
CCCCCGCGTCGACGCCGAGCCCAGCGTTGACACCCAGCCCCGGGGCGACA
CCAAGCCCCAGCGGCACGCCGGCACCACCCAGCGCCACGCCATCCCCCGG
AGGGTCGTCTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCGGCACAAGCAGGGGTACCGTGGTGGCGTGGGCGTTCTTCACC
GTGTTGCTCGGCGTGGCGCTATTGATGTTCCTGTACAATCGCGAGCAAAA
CAAGAGATTGCGGGCACAGCGCGGGGATTTCCTTCGACAGAGTCTGGCGT
CGAATGACACCATGAATCCACCGTATCACCAAGCAGAGCCACTACCGGGG
CACAAGCCGGATCCCACCATGTCTTCGTTTTAA
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