prot_Ecto-sp6_S_contig89.17932.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig89.17932.1
Unique Name	prot_Ecto-sp6_S_contig89.17932.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	763

Homology

[Close]

BLAST of mRNA_Ecto-sp6_S_contig89.17932.1 vs. uniprot
Match: D8LKF5_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF5_ECTSI)

HSP 1 Score: 1238 bits (3204), Expect = 0.000e+0
Identity = 721/752 (95.88%), Postives = 725/752 (96.41%), Query Frame = 0

Query:   13 MLSSSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTSPSSGDSGHGRAGTRGKAKGPAAAAASAAEVEAAGVCCALCDDKSEGRWVTRCKGSGGGAGTRQQQTCNIWVHPACAWQASGYAMRSIAGSSRLTADGEKRRLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCEGLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKVMQIQQWVKEVKVLAATNTAGAGXXXXXXXXXXXXXQARYASLKDLLARREELEAPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAGGXAPXXXXXXXGAAGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAGTLTVCSPTPLGENGKADEDASGLLQEAAAFSHGIKTSAKDALTRALGRKGWAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGAVSPLVTKVKALAEGEGPATRRVVSQARDLLKPVEEGGLSEASSDAELCGAEGVLGNLRATPVVYPEEEVI 763
            ML+SSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTSPSSGDSGHGRAGTRGKAKGPAAAA SAAEVEAAGVCCALC+DKSEGRWVTRCKGSGGG GTRQQQTCNIWVHPACAWQ  GYAMRSIAGSSRLTADGEKRRLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCEGLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKVMQIQQWVKEVKVLAATNTA   XXXXXXXXXXXXX ARYAS+KDLLARREELEAPLE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAG         X GAAGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAGTLTVCSPTP GENGKADEDASGLLQEAAAFSHGIKTSAKDALTRALGRKGWAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGAVSPLVTKVKALAEGEGPATR     ARDLLKPVEEGGLSEASSDAELCGAEGVLGNLRATPVVYPEEE +
Sbjct:    1 MLTSSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTSPSSGDSGHGRAGTRGKAKGPAAAA-SAAEVEAAGVCCALCEDKSEGRWVTRCKGSGGGTGTRQQQTCNIWVHPACAWQNEGYAMRSIAGSSRLTADGEKRRLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCEGLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKVMQIQQWVKEVKVLAATNTAXXXXXXXXXXXXXXXXXARYASVKDLLARREELEAPLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAG---------XAGAAGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAGTLTVCSPTPPGENGKADEDASGLLQEAAAFSHGIKTSAKDALTRALGRKGWAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGAVSPLVTKVKALAEGEGPATR-----ARDLLKPVEEGGLSEASSDAELCGAEGVLGNLRATPVVYPEEESV 737

[Close]

BLAST of mRNA_Ecto-sp6_S_contig89.17932.1 vs. uniprot
Match: A0A6H5KV96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV96_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 1.800e-109
Identity = 256/271 (94.46%), Postives = 259/271 (95.57%), Query Frame = 0

Query:  251 MQIQQWVKEVKVLAATNTAGAGXXXXXXXXXXXXXQARYASLKDLLARREELEAPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAGGXAPXXXXXXXGAAGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIR 521
            MQIQQWVKEVKVLAATNTAGA XXXXXXXXXXXXX   YASLK+LLARREELEAPL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSV  LEAEVGQLE+LVA+ARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAGG APXXXXXXX   GLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIR
Sbjct:    1 MQIQQWVKEVKVLAATNTAGAXXXXXXXXXXXXXXXXXYASLKELLARREELEAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVGTLEAEVGQLEKLVATARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAGGGAPXXXXXXXXXXGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIR 271

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig89.17932.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig89.17932.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LKF5_ECTSI	0.000e+0	95.88	PHD-type domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5KV96_9PHAE	1.800e-109	94.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 292..312
IPR001965	Zinc finger, PHD-type	SMART	SM00249	PHD_3	coord: 168..217 e-value: 1.2E-9 score: 48.0 coord: 86..163 e-value: 25.0 score: 1.3
IPR019787	Zinc finger, PHD-finger	PFAM	PF00628	PHD	coord: 168..218 e-value: 3.0E-7 score: 30.2
IPR019787	Zinc finger, PHD-finger	PROSITE	PS50016	ZF_PHD_2	coord: 166..219 score: 9.214
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 161..240 e-value: 1.8E-12 score: 48.6
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 169..216
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 162..223

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig89	contig	Ecto-sp6_S_contig89:238097..247083 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig89.17932.1	mRNA_Ecto-sp6_S_contig89.17932.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig89 238097..247083 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig89.17932.1 ID=prot_Ecto-sp6_S_contig89.17932.1|Name=mRNA_Ecto-sp6_S_contig89.17932.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=763bp
QAADTAEQQHQQMLSSSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTS
PSSGDSGHGRAGTRGKAKGPAAAAASAAEVEAAGVCCALCDDKSEGRWVT
RCKGSGGGAGTRQQQTCNIWVHPACAWQASGYAMRSIAGSSRLTADGEKR
RLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCE
GLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKV
MQIQQWVKEVKVLAATNTAGAGAAATSDAAAAAAAQARYASLKDLLARRE
ELEAPLEEEEEESIARGGKGGRGSGGARGGARGGGGGGGGGSSSGGSDAG
DEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKK
SDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALA
AARWVLKAVVLLTGGAGGGAPGGGAGGAGAAGLPAFSEVSALLDNAGEAM
ATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMR
RHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAG
TLTVCSPTPLGENGKADEDASGLLQEAAAFSHGIKTSAKDALTRALGRKG
WAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGAVSPLVTK
VKALAEGEGPATRRVVSQARDLLKPVEEGGLSEASSDAELCGAEGVLGNL
RATPVVYPEEEVI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001965	Znf_PHD
IPR019787	Znf_PHD-finger
IPR013083	Znf_RING/FYVE/PHD
IPR019786	Zinc_finger_PHD-type_CS
IPR011011	Znf_FYVE_PHD