mRNA_Ecto-sp6_S_contig89.17932.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17932.1
Unique NamemRNA_Ecto-sp6_S_contig89.17932.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig89.17932.1 vs. uniprot
Match: D8LKF5_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF5_ECTSI)

HSP 1 Score: 1238 bits (3204), Expect = 0.000e+0
Identity = 721/752 (95.88%), Postives = 725/752 (96.41%), Query Frame = 1
Query:   37 MLSSSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTSPSSGDSGHGRAGTRGKAKGPAAAAASAAEVEAAGVCCALCDDKSEGRWVTRCKGSGGGAGTRQQQTCNIWVHPACAWQASGYAMRSIAGSSRLTADGEKRRLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCEGLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKVMQIQQWVKEVKVLAATNTAGAGXXXXXXXXXXXXXQARYASLKDLLARREELEAPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAGGXAPXXXXXXXGAAGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAGTLTVCSPTPLGENGKADEDASGLLQEAAAFSHGIKTSAKDALTRALGRKGWAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGAVSPLVTKVKALAEGEGPATRRVVSQARDLLKPVEEGGLSEASSDAELCGAEGVLGNLRATPVVYPEEEVI 2289
            ML+SSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTSPSSGDSGHGRAGTRGKAKGPAAAA SAAEVEAAGVCCALC+DKSEGRWVTRCKGSGGG GTRQQQTCNIWVHPACAWQ  GYAMRSIAGSSRLTADGEKRRLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCEGLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKVMQIQQWVKEVKVLAATNTA   XXXXXXXXXXXXX ARYAS+KDLLARREELEAPLE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAG         X GAAGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAGTLTVCSPTP GENGKADEDASGLLQEAAAFSHGIKTSAKDALTRALGRKGWAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGAVSPLVTKVKALAEGEGPATR     ARDLLKPVEEGGLSEASSDAELCGAEGVLGNLRATPVVYPEEE +
Sbjct:    1 MLTSSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTSPSSGDSGHGRAGTRGKAKGPAAAA-SAAEVEAAGVCCALCEDKSEGRWVTRCKGSGGGTGTRQQQTCNIWVHPACAWQNEGYAMRSIAGSSRLTADGEKRRLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCEGLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKVMQIQQWVKEVKVLAATNTAXXXXXXXXXXXXXXXXXARYASVKDLLARREELEAPLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAG---------XAGAAGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAGTLTVCSPTPPGENGKADEDASGLLQEAAAFSHGIKTSAKDALTRALGRKGWAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGAVSPLVTKVKALAEGEGPATR-----ARDLLKPVEEGGLSEASSDAELCGAEGVLGNLRATPVVYPEEESV 737          
BLAST of mRNA_Ecto-sp6_S_contig89.17932.1 vs. uniprot
Match: A0A6H5KV96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV96_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 1.800e-109
Identity = 256/271 (94.46%), Postives = 259/271 (95.57%), Query Frame = 1
Query:  751 MQIQQWVKEVKVLAATNTAGAGXXXXXXXXXXXXXQARYASLKDLLARREELEAPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAGGXAPXXXXXXXGAAGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIR 1563
            MQIQQWVKEVKVLAATNTAGA XXXXXXXXXXXXX   YASLK+LLARREELEAPL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSV  LEAEVGQLE+LVA+ARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAGG APXXXXXXX   GLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIR
Sbjct:    1 MQIQQWVKEVKVLAATNTAGAXXXXXXXXXXXXXXXXXYASLKELLARREELEAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVGTLEAEVGQLEKLVATARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAGGGAPXXXXXXXXXXGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIR 271          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKF5_ECTSI0.000e+095.88PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KV96_9PHAE1.800e-10994.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:238097..247083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2289
Hectar predicted targeting categoryother localisation
Exons11
Ec32 ortholog descriptionPHD-type zinc finger protein
Ec32 orthologEc-16_002770.1
Cds size2289
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17932.1prot_Ecto-sp6_S_contig89.17932.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 238097..247083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350509.3195736-CDS-Ecto-sp6_S_contig89:238096..2382321682350509.3195736-CDS-Ecto-sp6_S_contig89:238096..238232Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 238097..238232 -
1682350509.3307052-CDS-Ecto-sp6_S_contig89:239083..2392111682350509.3307052-CDS-Ecto-sp6_S_contig89:239083..239211Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 239084..239211 -
1682350509.3416119-CDS-Ecto-sp6_S_contig89:240265..2404141682350509.3416119-CDS-Ecto-sp6_S_contig89:240265..240414Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 240266..240414 -
1682350509.3513448-CDS-Ecto-sp6_S_contig89:241102..2412381682350509.3513448-CDS-Ecto-sp6_S_contig89:241102..241238Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 241103..241238 -
1682350509.3601117-CDS-Ecto-sp6_S_contig89:241799..2419771682350509.3601117-CDS-Ecto-sp6_S_contig89:241799..241977Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 241800..241977 -
1682350509.3684442-CDS-Ecto-sp6_S_contig89:242627..2427011682350509.3684442-CDS-Ecto-sp6_S_contig89:242627..242701Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 242628..242701 -
1682350509.3766196-CDS-Ecto-sp6_S_contig89:243039..2433451682350509.3766196-CDS-Ecto-sp6_S_contig89:243039..243345Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 243040..243345 -
1682350509.3842752-CDS-Ecto-sp6_S_contig89:244319..2447661682350509.3842752-CDS-Ecto-sp6_S_contig89:244319..244766Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 244320..244766 -
1682350509.3918748-CDS-Ecto-sp6_S_contig89:245202..2453921682350509.3918748-CDS-Ecto-sp6_S_contig89:245202..245392Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 245203..245392 -
1682350509.3997772-CDS-Ecto-sp6_S_contig89:246064..2462181682350509.3997772-CDS-Ecto-sp6_S_contig89:246064..246218Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 246065..246218 -
1682350509.4079983-CDS-Ecto-sp6_S_contig89:246692..2470831682350509.4079983-CDS-Ecto-sp6_S_contig89:246692..247083Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 246693..247083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17932.1

>prot_Ecto-sp6_S_contig89.17932.1 ID=prot_Ecto-sp6_S_contig89.17932.1|Name=mRNA_Ecto-sp6_S_contig89.17932.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=763bp
QAADTAEQQHQQMLSSSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTS
PSSGDSGHGRAGTRGKAKGPAAAAASAAEVEAAGVCCALCDDKSEGRWVT
RCKGSGGGAGTRQQQTCNIWVHPACAWQASGYAMRSIAGSSRLTADGEKR
RLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCE
GLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKV
MQIQQWVKEVKVLAATNTAGAGAAATSDAAAAAAAQARYASLKDLLARRE
ELEAPLEEEEEESIARGGKGGRGSGGARGGARGGGGGGGGGSSSGGSDAG
DEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKK
SDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALA
AARWVLKAVVLLTGGAGGGAPGGGAGGAGAAGLPAFSEVSALLDNAGEAM
ATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMR
RHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAG
TLTVCSPTPLGENGKADEDASGLLQEAAAFSHGIKTSAKDALTRALGRKG
WAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGAVSPLVTK
VKALAEGEGPATRRVVSQARDLLKPVEEGGLSEASSDAELCGAEGVLGNL
RATPVVYPEEEVI
back to top

mRNA from alignment at Ecto-sp6_S_contig89:238097..247083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17932.1 ID=mRNA_Ecto-sp6_S_contig89.17932.1|Name=mRNA_Ecto-sp6_S_contig89.17932.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8987bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:238097..247083- (Ectocarpus species6 EcLAC_371)
CAGGCCGCCGATACCGCGGAACAACAACACCAGCAGATGCTGTCCTCCAG CGATGAGGACTTCTGGGCCGCCGTGGCGGCTCAGGTGGCGAAGGAGGGAT CCAGCACGACTCCCGCGTGGCGACAGGTCGGCGTTGCTCCCCCGACGAGC CCGTCTTCGGGCGACAGCGGCCACGGCAGGGCCGGGACCCGCGGCAAGGC CAAAGGCCCCGCCGCCGCCGCCGCTTCCGCTGCGGAGGTGGAGGCCGCCG GGGTGTGCTGCGCGCTGTGCGATGACAAGTCGGAGGGGCGGTGGGTGACG AGGTGTAAGGGGTCTGGCGGCGGCGCGGGGACGAGGCAGCAGCAGACGTG CAACATCTGGGTCCACCCTGCGTGCGCTTGGCAGGCAAGTGGTTTTTTCC TTTCTTGTGTTTTTTTTTCTATTTTTTTGTCTGCACAGTAGCGAAAGGAG TCCGATATTTTCTACTTCGAAGTGGGTTTGATTTGTTTTGCCTTCTCTAG TTCTCGGCCGCTCTCTGGTAGAGACGATGCCGGTTGTTATTATACCCACG ACCTTTCCCTGAGATCCCGTTGTACTTTGTCATGCCGTCCAAGCTTTCGG GACATGCGGGAAGCACATGTAAATGGCGGGAACTTTGGACCGAACTGTGG CGTTCTGTAGTAGTGTTGTGTGATTTTTTTTTTGTTTTTTTCCGTGGTAT TTTGTCGAATAGAAGCAGCACACCCCGAACAAACATACATTAAAACAACA ACCAACGGTACTCTTTCTCCGATAACAACACAGCGGTAGCCGTAAGCCGA AAACCGAAAATCGTTAACACGTTCGATCATCTTCTTTTGTTTTGTTTTTT GCTTGTAGAATGAAGGGTACGCGATGAGGTCCATCGCCGGGTCCTCTCGC CTGACCGCGGACGGAGAGAAGAGGAGGCTGCCGACGGTGTTCTTCGCATG CCCCTTGCACGACAAGCCGGCCACTTACTGCTCGTGCAAGCGCGAGGAAG GGGAGGACGAGGACGGGGAGTGAGTGTTTTGGTTGTAGTTTTTGTACACA GCGGTTAGGGCCCGCACTCAAGAGCCTCTTTTTTGTGGAGGGCCCTGTGT AGTGCAGGTAGTGGCCAGAGAATTGACCGGCCCTGTACATGGGGCACTAT TGAAAGTACCGAATGGCTTGTGATGGTTCTGTTCCAGCCGAATAAGCCGG AACCAATCCGGCACTGGCACTAAACAGGGCCCCCCAATAGTTTTGCCGGG GCTCGTTTCTTGATTTGTCTATGGGGTGTGTACCCCCACGACGACTTTGT AGGTTTTAGCGTACGCTACTTGACTGACCAGCTGTTCTTATGGCGAAGGT CGTAATAATGTATCTGTTCTGAGCCCCAAGTTCCCCAAGTGCGCGCGTCA CGTCTCGTACGATGTTTACCTCCGTCCCGAGCACGAAGGGACAGGACAGG ATGCTGCTGCCATCAGCTGGGGTCATACCTTCATCCGTGGTATTTCCATC GCGGCCGATTACAAGCGTGCTGTGTTAGTTTGAGGCTGTTCAGCACCAAC TCGGTTTTCTGCTCTCCCCCCACAAACCCAATCAGTGAACATTTTTTTTT CCCGTGTTGTTGTTTTTTTTTCATTTTTTTTTCCCGACGTTCTTATTTTT TGGTGGGTGGGTGGGCACACAAATGACTGCTTTCACAACAGAGAGGACTA CATCGAGTGCGAGAGCTGCAACGAGTGGTACCACTTCTCGTGCGAGGGAC TCGACGAGGACAATCCCCCGGAGAGGTACTCTTGCAAGCGGTGCCGGCAG CTGGCGGCCAAGGGGCAGAAGGTGCCGGCGCAGGAGCGGCGCCGCAACAA GGCCAAGACCAACGAATACCTGTCGGAGATGGTGAGTGGGAGGGGAAGCG AGCGGAAAGGGTGCATGTGTGTATCAATGGCCTTCGCCGACGTGCACATG GAAACACGATTGTGTGGGTGTCTTTTAGTTAGTATCTACAGTGCTAGCCG GCTGACCAATGGAAGACCTCAGTCTTTTAGATACAAAGCGCGAACGCTCT TTCTAGTTCAAGGAATCTACTGGGACAGGGCGCGCGTCTTTCTTTTACAC GAGCCCAAACAACGCTGATCGGACACACTAAACCCCGAGCTTGTTAATGG CGATGTTCATGGCTTTGACCCGACCCGACCAGCGGGGCTGACCAAGTACC GGACGCGCACCAACCTCACACCAACCTGAGGCAGACCGCCCACTCTAAAC CCCCTATTGCCTGGCCCAAATCATGCCGACGTGACGACAAATGGACCGGA AATCATGAATACAACAGCTCGCGAACAAGGTGATGCAGATCCAGCAGTGG GTCAAGGAGGTCAAGGTTCTTGCCGCGACGAACACGGCCGGCGCCGGCGC TGCTGCTACGAGCGATGCGGCGGCGGCGGCGGCGGCGCAGGCCCGGTACG CCTCCCTCAAAGATCTCCTCGCACGGCGGGAAGAACTCGAAGCACCCCTA GAGGAAGAGGAGGAAGAGAGCATCGCTAGGGGGGGCAAAGGCGGGAGGGG CAGCGGGGGGGCCCGCGGTGGTGCCCGAGGGGGGGGTGGCGGCGGCGGCG GCGGAAGCAGCAGCGGGGGTAGCGATGCCGGCGACGAGGAGGACGGGAAG GTGGTGCACGGCATGGGGGGCGTGTACGCGGAGGCGTCGGCGTTGCTGGA GTCGGTGGCGGAGGAGTCGGACAGGGCGGAGGGGGCGGTGGACGAGTGGT TCGACGAGCACCCGGTGAGGAAAAGAGAACCGCAATATAGTGCGTCCTCA ACACTGAACAGTGCTCATGACGAAAAGCGAAACCCACACAAGTATTTACT TTCATTGCATCACCAAAACTGAAAATCAATGAATATCCAAAACCAAACTA CGGTAGATTTGTATCTACCTTGGTCGGGTACTATTTATACTTTACACATG ACGGGTGAAGCCGTGGTGGGCAGCTGGGGTCGGAAGCCCTTCATGACCAT GGGAGCACTTCACTCGCCTCCTCTTGACTACCCTTTGCCATGGAATTCGT GACCCCTCCCCCCCTAGCCCCCCTTGGCTTCGTCCTCTCGAGAACGCGTG GTCGATGGTCGGACCGCTAAGGCAAGCAAAAGACAAGTACGCTCCACACG CTCCCCCTAGCTCGCTCTCGCCGCTACCCCCGTTCTTCGGTTGCAAAGAT AGCACACCTCCACACCTCCTGGAGTGATTTCCAAAACTCGATCACTCCAC GACGAAGAGGATGTCAACCTGAGATGACGTGTTTTCGCGAAGCTCTCGAC GAGACAGTGCCATCGCCTCGTATTTTCGGCACCGTCACCGCGCGTTTTGG CCTGCAGAGTAACCGAGCTGTGACAAAATCGTACCAGGGGGAGCGTGATG TCTTTCGCAGCCCACGGTTTCGCAGCCCCACGGTTTCCCAAAAACCAACC GTACCACCACCACGCACCCGATGACGAAGAGGATACATGAACGAAATGAA ACGCCCGAGACGGTTTCGGCGCTGTGACAGTATTTGAAAATCGGTCAAGG GGGTGTGTTATCTTGTGTCATATACCGTATGCATTCCCCCAACTTACACA ACGCCACCGATGAGGAAGAACCCTTGATGTAGCAAGCGTGTTCGCGTTCT TTATCCCGCAATAAGACTGGCGTTTTCTCATTGGTCAGTAACCGGTCAAC ACGGTCGATACTAACAATACACACACACACACATGCAGGAGCCTTACTAT AAGAAGTCGGACGGAGGAGCCCGTCTCGGCTACTGGAAGACCTCCGTCAG CCCGCTGGAGGCCGAGGTCGGGCAGCTGGAGCAGCTCGTCGCATCCGCGC GGTCCGCGCGCGCGGGGCCGCCGGCGGCGGTAGCGGCGGCGGAGGACGCC CTAGCGGCCGCCCGGTGGGTCTTGAAGGCGGTGGTGCTGTTAACCGGAGG GGCTGGCGGTGGTGCCCCCGGTGGTGGTGCCGGCGGGGCGGGGGCGGCGG GATTGCCGGCGTTTTCGGAGGTGTCTGCACTGCTGGACAACGCGGTGAGA TAGCGCGGTCGGGGGGGGGTCGGGGCTGTGTTCTCGTGCTCTTGTTGGAG CTATATGTGTAACGCAGCAAGGACGATGGAGGATGTTTGGGACACGCTGG GTGTTCCCGACGATCTGTTGCCTGGACCGCCGGGCGAAAACTCGTTGACA GTGCTGTGCGTCTTCATCCACGTATATTGTTGCGGCGAGGACAACGCAGA AAACGGACGTTGGAACGGAGGCTGCCACTACTATGACTGCTGCTTATTGT GTTGACTTTTTTTTTCTTTCGTTTCGCCTTCTTTTTGTGTTGGTCGGTTG GGCGGGGGCAAACACGAAAACCTTATTGGCAGGGAGAGGCGATGGCAACG AGTGCGGACCGGCGGGGAAGGGCGAACACCGCCTGGCAGCACGTGAACGA CATTAGGTAAGCGTAACAGAAGTGTTGTCTAAACTTATTATGTGCGCTCA CACTTTTGAGGGTGCTTGGTTTCCCGTTTTTACATACTGCTGGCACGAGC GTGTGCATCGATTGACCGTGATGGCAGCATTTGTCCACTGCTCCCGTGAG TAGTCTGATGATAAACAACACACGAGACCCCTTCAGGGCTCCCAGGTTCC TCTCGGCTCCTTGCGGGACCAGGGATAATTACCGTGAGACCGACTCCATG GTTGCTGTGTGTGGGTAAGTTTTTGAGTCACGTACGCAAATCCTAACAAT CTCAACGAGAACGAACGGAAAGGGCACCACAAACCCGACCGACTGCCGAG AAGTCTTGCCAGTATGTTTGTACGCACACTTGCAATCGAGAGGTCCTATT TTCCCCTTTGGAAACGGACGTCTGATCATCGGTGGCATCCCAGTGCATTA TTACCTGAAGTGAAGAGAGGGACAGGGAGAGAGGGACAGCGGGAGAGAGA GAGAGGGAGAGAGGGAGGGAGAGAGAGACGCAAACTCAACGTTTTGCCTG TTTTATACCGATAGAAAAACGCCTCTTCGTTTGGCATCTAGCAGCGGTCT AATGGAAGAAAAAATGCATACGCGCACATGTATATGTACACATGCAACAC TCGCAGGAGCATGGCGACCCAGTGGATCAGGCGTGCCAAGACATGCCTCC GTGCCGACGGTGCTGCGGCGGGCGTGACTTTGGCCGTGATGCGGCGACAC CTGTCCTCGGGCGACGCGGTGCCGGTGGACATGCCGGAGTACCACGAGCT GGAGCGCGTAGCGACCGAGTGGGAGGCGTGGGAGGTGAGAGAGATGGATC GAGCATAGACAGGGGCAGAGGCACAGAGGGAGGAGGAGAGAGACAGAGAC AGGCAGGCAGACGGACAGATAGACAGGCAGACATCGAGAGACAGAGTTTA GATGTAGCGACGACAAGGTTGAGCCGAAAGACACGGTCAGAGACACACAA AGAGAGAGGCGAGAGAGAGGGGGCACGCACCTTAACAGGCAGAACGACTG CGACGTGCAAGAGAGGACGCTCCTCCACTGCGAGTACCCACCCTTCCTCT GACCCTTGGTCACAAAGGCACTATTAGCAAGCTGTGTTTGTTTTCCATGC TCATTTTATTTTTATTTTTAGTGCGTGGTATATTGATTTGCTGCCACCGC TGTTTGCCGCCGCTGCCGCTACCGCCTGTAGGCCTAAGCGCCGCGCGTCG CTCTCTCTCTCTCTTTTGCTGATCCTTCTATCGTGCATGGCTATTGTTTT GATTGCTGTTGTTTTTTACCGTTGTCTGCTGCTCCCACTGTTAATACTAC GTCCACCCCTACTGCTCCTGTTCCTATTCTCCCTATATCATGAAGTCTCG AGCACTGCGCTGCGCGGCGACCCTGGAGGCTGTCCCTCTGGAAGATTTGG CGGGGACCCTCACCGTGTGCTCCCCCACACCCCTCGGCGAAAACGGCAAG GCCGACGAGGACGCTTCGGGACTCTTGCAAGGTGTGTCATTCACCACACC AAAAAAAAAAGCTGCTGCCGTTACGTTACTATTATACAGAAGCAAACGCG TGCCACTAAACCTGTGATCATGTTTGTATGTACATACCAGTAGAACATTT CGAATATTTTCTCCAACACGACGCCGGAGGAAGGTGTTCTTTTTTTCTTT TTTAAAATGTGCCGCATATGTCAAGAAGATGGGAGGTATAGCATGGTGTA GTGTCCTTCTCCACATGTGGAGGGTGGAGGGTCTTCTGCTGTCCGGTCCG TCGCGGGTGTGACGTCCGAAAGGTATTCACCACTTTTTCGTGTCTCTCGG TTGTCGTCGAATCTCTACCCCCCCCCTCCGCGTCCTTGCTCCGTGATTGT TGCATTCATCCTGCGCTTGTGCTGGTTTGTTCAGGTCTCGCATGCGTGTT GTTTCGTCCATGGCTGTGAGTTGCTTTTCGTTTATGGTGTTCTTCATGTG GTTGTGTCGGAGCATGGTCGCGGACGACGGAGTTAGAGCTATATTTGTAC TTCATTTTTTCCGAAAAGTTGTGCATAAGTTTTAATACAACACAATTTAT TCGCAGAAAATACGATCACGATTGTACGCAGTTTTCAGGGAAAAAAAGTC AGTTTTGATTATTTACTCGACACACCACGTTCCGTCTGCGCATGTTTTTA TTCTTCTTTCGTTTCGCAGAAGCGGCGGCGTTTTCTCATGGCATCAAGAC GTCGGCCAAGGACGCCCTGACCAGGGCCCTGGGCAGGAAGGGTTGGGCGC AGCGGGCGGTTGCGGTGATATCGTGCGAGGCCGTCGGTATCGCTCGCCCC TCGGTTGCCTTGACGCAGGTGTGGTGGTTTGGCCGTGTTTTTTTTCCGTC ACGGTTGTCGTCCTCGTCATCGTATTCATGGCGACGGTGATGTATGTTTT TATTTTGTTTTTTTTGCGAATGATGTGGTACCTGGTAGCCATAAGAGGTG GAAAGTCCCCCCCCCCCCTCGGCCTTGTTTGCCTTCGGGGTTTGGGTTTT CGTCGCTTGGCAACGACGTTGTAAAACAAGCCGCCCCCGGTGTTTGCCAT CGGCGTTTGGGTTGAAAATAAATTAAGTCATACGTAGCTGTCATCCGTAC GCAAGGAAGTAAGCACAAGATGCCGAACACCCTTAGCAGGATGCAGCTCA CCCTTCATGCGACTCGCCAAATACCTCACGGCGCTTCGCGCTTGGTGATG TGAGAGCCTGGTCCGGTGAGAACCCGGCATGCTCCGTCCCGGCTTTGTAG GGATGCGAGGTCAATGGTCAAACGACTACGGCATGCACGACTATGAGTAC ACCCCCCCCCCCCCCCCCAAACCGATTTTCAAAGCTCGATTGCTGCACAA CCGAGATTGTGCCAACGATAAAATTGTGGTTTAGGAGAACGTCTCGAGAG CTTTCCGTAGAAGTATCGGGCTCTTTCCAAACCCCCTTGATTTGTGGAGC AATCTACCTTTGAAGCTCGGCCTAGGGGGGCATCTCTCCTCCTCTGTATC GTTGTTGGGAACATACGCGAGCGCTCGGGTTCGGCGACAGATTCTTTGCC ATCTTTTCACAGGTGGACGGTGTGGCGTTGGATGTTTGGTTCTCAAGGGT GATCGCTTTTTTTTTTTTGGTCATGGAACGGCCTGCTATCTCTTTGCCTC GGGGCCCTTTTGTACCTCCACACGATGCCGATGCGTTCGTTCCTCGCTAA AAACAAAACACCTCGTGGTATTCCGTGTTGATATTTACGCACACAATAGA ATAAATCACATGAATCCGTGCTCTCAAGTTCGGTGCAAGTTCTTCGGCAC CGCACACCGCCGTGCACTCATTCGTATCAGCACACACACGCCTTCCCGTC CGGATCGTTGTCGGCAACGCAGTCGCTCATGACGGAGGCTGGCAAGCTCG GGCTCCTGAGGGCCGCCGGGGGCGCCGTGTCGCCCCTCGTGACTAAGGTT AAGGCGCTCGCGGAGGGGGAGGGTCCGGCAACCAGGCGAGTCGTGAGCCA GTGGAGGGATTGTCGCCCCTAGAATGCTGTCTTGTCTTGTTGGTCGTTTT CTTTTCGTCTGCATACGGTGGGAGTGATTCGGCGGCCGCGGTTGTTTTTT GTTGTTGCCGTTGCTGGGGAAGCTGCTGTCTTTTTTGACAATTTCGTTTG CACACGGCGGGAGTGATTGGGCGGCCGCGTTGTTGTTGTTTTCTTTGTTG GCAATGTTAGGGGAAGAAGGTTTGCGGGAGAGGGACGCGCTCGGTCGCCC GGGGCCGGAGAACGCCGTGTTTTTCGACATGAAACCCTCTTGTCGCGACC GTTTTTGACGACTGGGACAGAAAACGACGAACGACAGCGACGCGTGTTGG GGTGAAGTGTTGCTTTTTTTTTACTTTCCGTGCAGGAACGCGCATCCCTT TGTGCACCCTTTTTTGGTTGCCTGAACACCACGTTGCTCGACAATGAGGC TCTCGAGACGCTGTAGGCGATACAGCACCACTTCATTATTTCGATTCCAA TGCTGTGGAGATCTGCTGTGGGCGATGTAGCAGCACTACCTTATTCTCGA TAATAAGGCTATGGAGAGCTGCTGTAGGTGACACAGCAATACTACCGTTC TGGATAACTCGAGGCACCGAGATACGCTGTAGGCGATTTAGCAACACTCT TTGTCTCTCGTTTAACTCAAGGCTCCCGAGATCGATCTGCTGTGCATTGG CGATAGCGAAAACGTTTTGTCGCCCTCCGCCAGCACAACGGTTATACATC GTGTGGCAACTCTCGACGGACGACCACCTGCAATACAGCAGCAGCAGCGG CAGCGGTCTGACTCGTTTTTACACGACCCCCTTTTTTTCGGTCCGGCGCA GGGCTAGGGATCTGCTCAAGCCGGTGGAGGAAGGGGGCCTGAGCGAGGCT TCCAGCGACGCGGAGTTGTGCGGTGCCGAAGGCGTGCTGGGCAATCTGCG CGCGACGCCCGTCGTCTATCCCGAAGAAGAGGTGATC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:238097..247083-

>mRNA_Ecto-sp6_S_contig89.17932.1 ID=mRNA_Ecto-sp6_S_contig89.17932.1|Name=mRNA_Ecto-sp6_S_contig89.17932.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2289bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:238097..247083- (Ectocarpus species6 EcLAC_371)
CAGGCCGCCGATACCGCGGAACAACAACACCAGCAGATGCTGTCCTCCAG
CGATGAGGACTTCTGGGCCGCCGTGGCGGCTCAGGTGGCGAAGGAGGGAT
CCAGCACGACTCCCGCGTGGCGACAGGTCGGCGTTGCTCCCCCGACGAGC
CCGTCTTCGGGCGACAGCGGCCACGGCAGGGCCGGGACCCGCGGCAAGGC
CAAAGGCCCCGCCGCCGCCGCCGCTTCCGCTGCGGAGGTGGAGGCCGCCG
GGGTGTGCTGCGCGCTGTGCGATGACAAGTCGGAGGGGCGGTGGGTGACG
AGGTGTAAGGGGTCTGGCGGCGGCGCGGGGACGAGGCAGCAGCAGACGTG
CAACATCTGGGTCCACCCTGCGTGCGCTTGGCAGGCAAGTGGGTACGCGA
TGAGGTCCATCGCCGGGTCCTCTCGCCTGACCGCGGACGGAGAGAAGAGG
AGGCTGCCGACGGTGTTCTTCGCATGCCCCTTGCACGACAAGCCGGCCAC
TTACTGCTCGTGCAAGCGCGAGGAAGGGGAGGACGAGGACGGGGAAGAGG
ACTACATCGAGTGCGAGAGCTGCAACGAGTGGTACCACTTCTCGTGCGAG
GGACTCGACGAGGACAATCCCCCGGAGAGGTACTCTTGCAAGCGGTGCCG
GCAGCTGGCGGCCAAGGGGCAGAAGGTGCCGGCGCAGGAGCGGCGCCGCA
ACAAGGCCAAGACCAACGAATACCTGTCGGAGATGCTCGCGAACAAGGTG
ATGCAGATCCAGCAGTGGGTCAAGGAGGTCAAGGTTCTTGCCGCGACGAA
CACGGCCGGCGCCGGCGCTGCTGCTACGAGCGATGCGGCGGCGGCGGCGG
CGGCGCAGGCCCGGTACGCCTCCCTCAAAGATCTCCTCGCACGGCGGGAA
GAACTCGAAGCACCCCTAGAGGAAGAGGAGGAAGAGAGCATCGCTAGGGG
GGGCAAAGGCGGGAGGGGCAGCGGGGGGGCCCGCGGTGGTGCCCGAGGGG
GGGGTGGCGGCGGCGGCGGCGGAAGCAGCAGCGGGGGTAGCGATGCCGGC
GACGAGGAGGACGGGAAGGTGGTGCACGGCATGGGGGGCGTGTACGCGGA
GGCGTCGGCGTTGCTGGAGTCGGTGGCGGAGGAGTCGGACAGGGCGGAGG
GGGCGGTGGACGAGTGGTTCGACGAGCACCCGGAGCCTTACTATAAGAAG
TCGGACGGAGGAGCCCGTCTCGGCTACTGGAAGACCTCCGTCAGCCCGCT
GGAGGCCGAGGTCGGGCAGCTGGAGCAGCTCGTCGCATCCGCGCGGTCCG
CGCGCGCGGGGCCGCCGGCGGCGGTAGCGGCGGCGGAGGACGCCCTAGCG
GCCGCCCGGTGGGTCTTGAAGGCGGTGGTGCTGTTAACCGGAGGGGCTGG
CGGTGGTGCCCCCGGTGGTGGTGCCGGCGGGGCGGGGGCGGCGGGATTGC
CGGCGTTTTCGGAGGTGTCTGCACTGCTGGACAACGCGGGAGAGGCGATG
GCAACGAGTGCGGACCGGCGGGGAAGGGCGAACACCGCCTGGCAGCACGT
GAACGACATTAGGAGCATGGCGACCCAGTGGATCAGGCGTGCCAAGACAT
GCCTCCGTGCCGACGGTGCTGCGGCGGGCGTGACTTTGGCCGTGATGCGG
CGACACCTGTCCTCGGGCGACGCGGTGCCGGTGGACATGCCGGAGTACCA
CGAGCTGGAGCGCGTAGCGACCGAGTGGGAGGCGTGGGAGTCTCGAGCAC
TGCGCTGCGCGGCGACCCTGGAGGCTGTCCCTCTGGAAGATTTGGCGGGG
ACCCTCACCGTGTGCTCCCCCACACCCCTCGGCGAAAACGGCAAGGCCGA
CGAGGACGCTTCGGGACTCTTGCAAGAAGCGGCGGCGTTTTCTCATGGCA
TCAAGACGTCGGCCAAGGACGCCCTGACCAGGGCCCTGGGCAGGAAGGGT
TGGGCGCAGCGGGCGGTTGCGGTGATATCGTGCGAGGCCGTCGGTATCGC
TCGCCCCTCGGTTGCCTTGACGCAGTCGCTCATGACGGAGGCTGGCAAGC
TCGGGCTCCTGAGGGCCGCCGGGGGCGCCGTGTCGCCCCTCGTGACTAAG
GTTAAGGCGCTCGCGGAGGGGGAGGGTCCGGCAACCAGGCGAGTCGTGAG
CCAGGCTAGGGATCTGCTCAAGCCGGTGGAGGAAGGGGGCCTGAGCGAGG
CTTCCAGCGACGCGGAGTTGTGCGGTGCCGAAGGCGTGCTGGGCAATCTG
CGCGCGACGCCCGTCGTCTATCCCGAAGAAGAGGTGATC
back to top