prot_Ecto-sp6_S_contig85.17708.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig85.17708.1
Unique Nameprot_Ecto-sp6_S_contig85.17708.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length196
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17708.1 vs. uniprot
Match: A0A6H5KH06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH06_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.680e-5
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0 
Query:    9 TSIFLGLMSVVGLLLVVLQSSSSDIQLGPTH 39
            TSIFLGLMSVVGLLLVVLQSSSS+IQLG TH
Sbjct:    2 TSIFLGLMSVVGLLLVVLQSSSSEIQLGNTH 32
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17708.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH06_9PHAE3.680e-593.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..195
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..31
score: 0.52
NoneNo IPR availableTMHMMTMhelixcoord: 7..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:753964..754551 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17708.1mRNA_Ecto-sp6_S_contig85.17708.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig85 753964..754551 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig85.17708.1 ID=prot_Ecto-sp6_S_contig85.17708.1|Name=mRNA_Ecto-sp6_S_contig85.17708.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=196bp
MRFTCSFVTSIFLGLMSVVGLLLVVLQSSSSDIQLGPTHPRTCLPLPCPP
RRGASSPRKPYSYPWPKGRHHRRGHHRNSHCRDHRYRQHSGHRKREHRTG
DRQKPNAERQWWLADDVEVHPIARRDHPLGHKAPRRCMPPRCPRRDRHVG
WAVGGYPWRACSPRPEGVHVAWSADRGGTPQDCGRDLPGHHRQSA*
back to top