mRNA_Ecto-sp6_S_contig85.17708.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17708.1
Unique NamemRNA_Ecto-sp6_S_contig85.17708.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig85.17708.1 vs. uniprot
Match: A0A6H5KH06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH06_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 7.100e-45
Identity = 86/107 (80.37%), Postives = 90/107 (84.11%), Query Frame = 2 
Query:  269 PGTGNESTELEIARSQMLNDSGGLPMTSRSIQLHDVTTPLATRPPAAVCHPDAHDAIDMWVGQLEAILGELALHAQKGYTSPGALIGEGLHKIAAGISQG-ITGKVP 586
            PGTG ES  L+IARSQML DSG LPMTSR +QLHDVTTP+A  PPAAVCHPDAHDAIDMWVGQLEAILGELALHAQK   S GALI +GL KIAAGI  G ITGKVP
Sbjct:   75 PGTGTESA-LQIARSQMLYDSGDLPMTSRYVQLHDVTTPVAASPPAAVCHPDAHDAIDMWVGQLEAILGELALHAQKEERSAGALIAQGLRKIAAGIYPGGITGKVP 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH06_9PHAE7.100e-4580.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:753964..754551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size588
Hectar predicted targeting categorysignal peptide
Exons1
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350485.0167792-CDS-Ecto-sp6_S_contig85:753963..7545511682350485.0167792-CDS-Ecto-sp6_S_contig85:753963..754551Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 753964..754551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17708.1prot_Ecto-sp6_S_contig85.17708.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 753964..754551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17708.1

>prot_Ecto-sp6_S_contig85.17708.1 ID=prot_Ecto-sp6_S_contig85.17708.1|Name=mRNA_Ecto-sp6_S_contig85.17708.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=196bp
MRFTCSFVTSIFLGLMSVVGLLLVVLQSSSSDIQLGPTHPRTCLPLPCPP
RRGASSPRKPYSYPWPKGRHHRRGHHRNSHCRDHRYRQHSGHRKREHRTG
DRQKPNAERQWWLADDVEVHPIARRDHPLGHKAPRRCMPPRCPRRDRHVG
WAVGGYPWRACSPRPEGVHVAWSADRGGTPQDCGRDLPGHHRQSA*
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mRNA from alignment at Ecto-sp6_S_contig85:753964..754551-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17708.1 ID=mRNA_Ecto-sp6_S_contig85.17708.1|Name=mRNA_Ecto-sp6_S_contig85.17708.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=588bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:753964..754551- (Ectocarpus species6 EcLAC_371)
ATGCGCTTTACGTGCTCTTTCGTGACTTCGATCTTCCTCGGACTCATGTC
TGTTGTAGGGCTTCTGCTGGTGGTCTTGCAGAGCAGTAGCTCTGATATCC
AACTCGGCCCCACGCACCCACGCACCTGCTTGCCCCTGCCGTGCCCGCCA
AGGAGGGGTGCTTCAAGTCCGAGGAAGCCATACTCGTATCCTTGGCCAAA
AGGCCGCCACCACCGCCGCGGCCACCACCGCAACAGCCACTGTCGCGACC
ACCGATACCGCCAGCACTCCGGGCACCGGAAACGAGAGCACAGAACTGGA
GATCGCCAGAAGCCAAATGCTGAACGACAGTGGTGGCTTGCCGATGACGT
CGAGGTCCATCCAATTGCACGACGTGACCACCCCCTTGGCCACAAGGCCC
CCCGCCGCTGTATGCCACCCCGATGCCCACGACGCGATCGACATGTGGGT
TGGGCAGTTGGAGGCTATCCTTGGAGAGCTTGCTCTCCACGCCCAGAAGG
GGTACACGTCGCCTGGAGCGCTGATCGGGGAGGGACTCCACAAGATTGCG
GCCGGGATCTCCCAGGGCATCACCGGCAAAGTGCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:753964..754551-

>mRNA_Ecto-sp6_S_contig85.17708.1 ID=mRNA_Ecto-sp6_S_contig85.17708.1|Name=mRNA_Ecto-sp6_S_contig85.17708.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:753964..754551- (Ectocarpus species6 EcLAC_371)
ATGCGCTTTACGTGCTCTTTCGTGACTTCGATCTTCCTCGGACTCATGTC
TGTTGTAGGGCTTCTGCTGGTGGTCTTGCAGAGCAGTAGCTCTGATATCC
AACTCGGCCCCACGCACCCACGCACCTGCTTGCCCCTGCCGTGCCCGCCA
AGGAGGGGTGCTTCAAGTCCGAGGAAGCCATACTCGTATCCTTGGCCAAA
AGGCCGCCACCACCGCCGCGGCCACCACCGCAACAGCCACTGTCGCGACC
ACCGATACCGCCAGCACTCCGGGCACCGGAAACGAGAGCACAGAACTGGA
GATCGCCAGAAGCCAAATGCTGAACGACAGTGGTGGCTTGCCGATGACGT
CGAGGTCCATCCAATTGCACGACGTGACCACCCCCTTGGCCACAAGGCCC
CCCGCCGCTGTATGCCACCCCGATGCCCACGACGCGATCGACATGTGGGT
TGGGCAGTTGGAGGCTATCCTTGGAGAGCTTGCTCTCCACGCCCAGAAGG
GGTACACGTCGCCTGGAGCGCTGATCGGGGAGGGACTCCACAAGATTGCG
GCCGGGATCTCCCAGGGCATCACCGGCAAAGTGCCTGA
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