prot_Ecto-sp6_S_contig85.17673.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig85.17673.1
Unique Nameprot_Ecto-sp6_S_contig85.17673.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length89
Homology
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BLAST of mRNA_Ecto-sp6_S_contig85.17673.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.790e-32
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0 
Query:   16 STYCVSFPLLVCIAQACLAFVPSWTATFRSSRSQPPASAPAAATFSISQPSGAICPVFGACVTCGAQYFYPVRG 89
            S  CVS  LLV IAQACLAFVPSWTATFRSSRSQPPAS PAAATFS+SQPSG ICPVFGAC TCGAQ+FYPV G
Sbjct:    2 SRNCVSVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPG 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17673.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM56_ECTSI1.790e-3285.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..89
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:362528..362794 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17673.1mRNA_Ecto-sp6_S_contig85.17673.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig85 362528..362795 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig85.17673.1 ID=prot_Ecto-sp6_S_contig85.17673.1|Name=mRNA_Ecto-sp6_S_contig85.17673.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=89bp
RTPTKRSEESIGFKRSTYCVSFPLLVCIAQACLAFVPSWTATFRSSRSQP
PASAPAAATFSISQPSGAICPVFGACVTCGAQYFYPVRG
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