mRNA_Ecto-sp6_S_contig85.17673.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17673.1
Unique NamemRNA_Ecto-sp6_S_contig85.17673.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig85.17673.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.790e-32
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:   46 STYCVSFPLLVCIAQACLAFVPSWTATFRSSRSQPPASAPAAATFSISQPSGAICPVFGACVTCGAQYFYPVRG 267
            S  CVS  LLV IAQACLAFVPSWTATFRSSRSQPPAS PAAATFS+SQPSG ICPVFGAC TCGAQ+FYPV G
Sbjct:    2 SRNCVSVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPG 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM56_ECTSI1.790e-3285.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:362528..362795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size269
Hectar predicted targeting categorychloroplast
Exons1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350481.904472-CDS-Ecto-sp6_S_contig85:362527..3627941682350481.904472-CDS-Ecto-sp6_S_contig85:362527..362794Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 362528..362794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17673.1prot_Ecto-sp6_S_contig85.17673.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 362528..362794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17673.1

>prot_Ecto-sp6_S_contig85.17673.1 ID=prot_Ecto-sp6_S_contig85.17673.1|Name=mRNA_Ecto-sp6_S_contig85.17673.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=89bp
RTPTKRSEESIGFKRSTYCVSFPLLVCIAQACLAFVPSWTATFRSSRSQP
PASAPAAATFSISQPSGAICPVFGACVTCGAQYFYPVRG
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mRNA from alignment at Ecto-sp6_S_contig85:362528..362795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17673.1 ID=mRNA_Ecto-sp6_S_contig85.17673.1|Name=mRNA_Ecto-sp6_S_contig85.17673.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=268bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:362528..362795+ (Ectocarpus species6 EcLAC_371)
CGCACCCCTACTAAGCGAAGCGAAGAGAGCATTGGTTTCAAAAGGTCAAC
GTATTGTGTGTCGTTTCCTCTCCTGGTCTGTATCGCACAAGCATGCTTGG
CCTTCGTCCCGAGCTGGACTGCGACTTTCAGGTCGTCACGCTCGCAGCCC
CCTGCTTCCGCGCCTGCGGCGGCGACGTTTTCGATCTCGCAGCCCTCTGG
TGCCATCTGCCCTGTGTTCGGGGCGTGTGTCACTTGTGGGGCGCAATATT
TTTACCCGGTGCGAGGGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:362528..362795+

>mRNA_Ecto-sp6_S_contig85.17673.1 ID=mRNA_Ecto-sp6_S_contig85.17673.1|Name=mRNA_Ecto-sp6_S_contig85.17673.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:362528..362795+ (Ectocarpus species6 EcLAC_371)
CGCACCCCTACTAAGCGAAGCGAAGAGAGCATTGGTTTCAAAAGGTCAAC
GTATTGTGTGTCGTTTCCTCTCCTGGTCTGTATCGCACAAGCATGCTTGG
CCTTCGTCCCGAGCTGGACTGCGACTTTCAGGTCGTCACGCTCGCAGCCC
CCTGCTTCCGCGCCTGCGGCGGCGACGTTTTCGATCTCGCAGCCCTCTGG
TGCCATCTGCCCTGTGTTCGGGGCGTGTGTCACTTGTGGGGCGCAATATT
TTTACCCGGTGCGAGGG
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