prot_Ecto-sp6_S_contig11.1271.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig11.1271.1
Unique Nameprot_Ecto-sp6_S_contig11.1271.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length81
Homology
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BLAST of mRNA_Ecto-sp6_S_contig11.1271.1 vs. uniprot
Match: D8LAW9_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW9_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.570e-17
Identity = 50/76 (65.79%), Postives = 50/76 (65.79%), Query Frame = 0 
Query:    6 QHVALLPVLAAALLASVTAGRSXXXXXXXXXXXXXXXXXXXXXXXXXLLEENTQHAVGKEKVARQHALHISSPQPR 81
            QHVALLPVLAAALLASVTAGRS                         LLEENTQHAVGKEKVARQHALH SSPQPR
Sbjct:   49 QHVALLPVLAAALLASVTAGRSGGGPVAPALLHVQPTSQVSTSSGGGLLEENTQHAVGKEKVARQHALHTSSPQPR 124
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BLAST of mRNA_Ecto-sp6_S_contig11.1271.1 vs. uniprot
Match: A0A6H5JSI0_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 5.450e-6
Identity = 36/68 (52.94%), Postives = 36/68 (52.94%), Query Frame = 0 
Query:    1 MAPLQQHVALLPVLAAALLASVTAGRSXXXXXXXXXXXXXXXXXXXXXXXXX--LLEENTQHAVGKEK 66
            MAPLQQHVALLPVLAAALL SVTAGRS                           LLEE  QH  GKEK
Sbjct:    1 MAPLQQHVALLPVLAAALLVSVTAGRSGGGPVAPALLQPTSQVSTSTSTGSVGGLLEEKNQHPAGKEK 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1271.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAW9_ECTSI1.570e-1765.79START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JSI0_9PHAE5.450e-652.94START domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..81
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.765

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:910488..911816 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1271.1mRNA_Ecto-sp6_S_contig11.1271.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig11 910488..911846 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig11.1271.1 ID=prot_Ecto-sp6_S_contig11.1271.1|Name=mRNA_Ecto-sp6_S_contig11.1271.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=81bp
MAPLQQHVALLPVLAAALLASVTAGRSGGGPVAAALLQPTSQVSTSTSSG
GGLLEENTQHAVGKEKVARQHALHISSPQPR
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