mRNA_Ecto-sp6_S_contig11.1271.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1271.1
Unique NamemRNA_Ecto-sp6_S_contig11.1271.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig11.1271.1 vs. uniprot
Match: D8LAW9_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW9_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.190e-17
Identity = 50/76 (65.79%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:   46 QHVALLPVLAAALLASVTAGRSXXXXXXXXXXXXXXXXXXXXXXXXXLLEENTQHAVGKEKVARQHALHISSPQPR 273
            QHVALLPVLAAALLASVTAGRS                         LLEENTQHAVGKEKVARQHALH SSPQPR
Sbjct:   49 QHVALLPVLAAALLASVTAGRSGGGPVAPALLHVQPTSQVSTSSGGGLLEENTQHAVGKEKVARQHALHTSSPQPR 124
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BLAST of mRNA_Ecto-sp6_S_contig11.1271.1 vs. uniprot
Match: A0A6H5JSI0_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI0_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.070e-5
Identity = 36/68 (52.94%), Postives = 36/68 (52.94%), Query Frame = 1 
Query:   31 MAPLQQHVALLPVLAAALLASVTAGRSXXXXXXXXXXXXXXXXXXXXXXXXX--LLEENTQHAVGKEK 228
            MAPLQQHVALLPVLAAALL SVTAGRS                           LLEE  QH  GKEK
Sbjct:    1 MAPLQQHVALLPVLAAALLVSVTAGRSGGGPVAPALLQPTSQVSTSTSTGSVGGLLEEKNQHPAGKEK 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAW9_ECTSI3.190e-1765.79START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JSI0_9PHAE1.070e-552.94START domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:910488..911846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size275
Hectar predicted targeting categorysignal peptide
Exons2
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348772.0782573-CDS-Ecto-sp6_S_contig11:910487..9105991682348772.0782573-CDS-Ecto-sp6_S_contig11:910487..910599Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 910488..910599 -
1682348772.0884135-CDS-Ecto-sp6_S_contig11:911685..9118161682348772.0884135-CDS-Ecto-sp6_S_contig11:911685..911816Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 911686..911816 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348772.0978851-UTR-Ecto-sp6_S_contig11:911816..9118461682348772.0978851-UTR-Ecto-sp6_S_contig11:911816..911846Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 911817..911846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1271.1prot_Ecto-sp6_S_contig11.1271.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 910488..911816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1271.1

>prot_Ecto-sp6_S_contig11.1271.1 ID=prot_Ecto-sp6_S_contig11.1271.1|Name=mRNA_Ecto-sp6_S_contig11.1271.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=81bp
MAPLQQHVALLPVLAAALLASVTAGRSGGGPVAAALLQPTSQVSTSTSSG
GGLLEENTQHAVGKEKVARQHALHISSPQPR
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mRNA from alignment at Ecto-sp6_S_contig11:910488..911846-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1271.1 ID=mRNA_Ecto-sp6_S_contig11.1271.1|Name=mRNA_Ecto-sp6_S_contig11.1271.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1359bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:910488..911846- (Ectocarpus species6 EcLAC_371)
GTGCAACCATCTCACACATTGCTCGCTGCCATGGCCCCGCTACAGCAACA
CGTGGCGCTTCTGCCCGTGCTTGCGGCGGCTCTTTTGGCCTCTGTCACGG
CCGGGAGAAGCGGTGGTGGCCCCGTAGCTGCAGCTCTCCTACAACCCACA
AGTCAAGTCAGGTGCGCGCCAACTCACCCAGCAACGTACTCTTATGTACT
TGCGACTCAAGACTGCTTTTGTTGACTACACTGCTGTAGTGATTCGACCA
CATGCCCCTACTGGTTCCGATACAAGGTCTTCCGAGCTACTCGTGTTTTT
CTTGGTCCGTCGCAAGATGAAGGTGTACGTAGAGGTGTTGCGGGGATGTG
GATTTTGACTTGACGCCGTACGAACTACCAGTGACAACCCCCTTTTTTAT
CGTTGTGAAGAACAGGTGCAAAATAGACCGTTTGTTCCAAGACTCTCTTG
TGCACCCATGGCAGGGTAGGTACCGAAATTGTGCCTGTAGCAGCAGTGTC
GGAGAACTTCCGCTACACAGCGGTCGCCCATTCGATTAAATGCAAAGCGG
TCACGTATCCAGCAACGTGTATCCAAATAACATTGTTGGCGTGATTTTTT
CCGACAACCTCAATGACGTCACATCGATCCACGGATTGGAGTACTCCTCG
CGTGAAGATTTTCTTCGTCAAAAACCGTCGCTTCTTTTTCGTTGTTTGAA
AAACAAAACGATCTTTACCTTTTTATGAGGGTACCGTGCCGTTTTCCTCT
GACGGAAGAGCTCCGGTTCGGCATTTCACAGAAAACTTCCTCTGCAGTGT
TCCCGGCAACCGCGAGACTCGTAGTGTGAAGCTTTATTCTTCGCCTAAAA
AATACTGCTTGCACGATGTGGTTCCCCCACGCAACTTCGCTGGCTGTTTC
CACCACCAAACGCTGGCTCGTGTTGGCGTTGGTCGTTGCCATGTGTCCTG
TTGGCTACTGCCATGTTGATTATTGTCATGTGACATGCCCAACCCTCCTT
CGTGTTAACGTTAACTAACGTTGGCACCTTCGTGTCAAGGTTGAGGGTTG
GGTTCGGGTTTGGTTGACACGCGGCGCCGTTCTCGAGTTGAGTCTCCACC
GCTTGCGCCGCGGTGCTTCTTCTTCACCCCTGGGCCCTAACGCAGTGCGA
CGCCGCACAGTATATATCCTGATGCGCCAAAACCCTTCGTGTCTTCCCGG
AACCAAAAAGCCTTTCATCCTTGGAACCCCCGTTGCCCCTCTCAAAGCAC
CAGCACCAGCAGCGGCGGCGGCCTCCTGGAGGAGAACACTCAGCACGCCG
TCGGGAAGGAGAAGGTTGCCCGACAGCATGCGCTGCACATCTCTTCACCA
CAACCGCGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:910488..911846-

>mRNA_Ecto-sp6_S_contig11.1271.1 ID=mRNA_Ecto-sp6_S_contig11.1271.1|Name=mRNA_Ecto-sp6_S_contig11.1271.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:910488..911846- (Ectocarpus species6 EcLAC_371)
ATGGCCCCGCTACAGCAACACGTGGCGCTTCTGCCCGTGCTTGCGGCGGC
TCTTTTGGCCTCTGTCACGGCCGGGAGAAGCGGTGGTGGCCCCGTAGCTG
CAGCTCTCCTACAACCCACAAGTCAAGTCAGCACCAGCACCAGCAGCGGC
GGCGGCCTCCTGGAGGAGAACACTCAGCACGCCGTCGGGAAGGAGAAGGT
TGCCCGACAGCATGCGCTGCACATCTCTTCACCACAACCGCGG
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