prot_Ecto-sp6_S_contig104.946.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig104.946.1
Unique Nameprot_Ecto-sp6_S_contig104.946.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length118
Homology
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: D7G6S6_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S6_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 5.770e-72
Identity = 106/117 (90.60%), Postives = 108/117 (92.31%), Query Frame = 0
Query:    1 MSEMAEGVKGQEAQDVGMVESGKGPEPGTEEEAPLQEVRKCLLCCNNLSDPSVKYQANPSKENASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKGYPRVES 117
            MSEMA+G +GQEAQDVGM ESGKGPEPGTEEEAP QEVR CLLC N L DPSVKYQANPSKENASGLIIATGSC HVFHLDCIQ CLMNQSLCPVCENKGWEFAAIIHLKGYPRVES
Sbjct:    1 MSEMAKGAEGQEAQDVGMGESGKGPEPGTEEEAPWQEVRTCLLCFNKLRDPSVKYQANPSKENASGLIIATGSCWHVFHLDCIQRCLMNQSLCPVCENKGWEFAAIIHLKGYPRVES 117          
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A4D9CQ35_9STRA (RING-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQ35_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.550e-23
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 0
Query:   41 CLLCCNNLSDPSVKYQANPSKENASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKGY 112
            C +C NNL++PS++YQANPS  N +GL IA G C HVFHLDCIQ  L  +S+CP+C NK WEF+ I  + GY
Sbjct:   65 CAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLC-NKEWEFSKIERIPGY 135          
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: K0TN28_THAOC (RING-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TN28_THAOC)

HSP 1 Score: 96.3 bits (238), Expect = 7.550e-23
Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 0
Query:   41 CLLCCNNLSDPSVKYQANPSKENASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKGY 112
            C +C N+L++PS++YQANPS+ N +GL IA G+CGHVFHLDCIQ  L  +S+CP+C NK W+FA I  + G+
Sbjct:   91 CAICRNSLNEPSIEYQANPSQTNDNGLSIAFGTCGHVFHLDCIQRWLRTRSVCPLC-NKEWDFAKIERIPGF 161          
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: K0TCT4_THAOC (RING-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TCT4_THAOC)

HSP 1 Score: 96.3 bits (238), Expect = 3.030e-22
Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 0
Query:   41 CLLCCNNLSDPSVKYQANPSKENASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKGY 112
            C +C N+L++PS++YQANPS+ N +GL IA G+CGHVFHLDCIQ  L  +S+CP+C NK W+FA I  + G+
Sbjct:  150 CAICRNSLNEPSIEYQANPSQTNDNGLSIAFGTCGHVFHLDCIQRWLRTRSVCPLC-NKEWDFAKIERIPGF 220          
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: K0SGL2_THAOC (RING-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGL2_THAOC)

HSP 1 Score: 88.2 bits (217), Expect = 1.060e-19
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 0
Query:   41 CLLCCNNLSDPSVKYQANPSKENASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKGY 112
            C +C N++++PS++YQANP+  N +GL IA G+CGHVFHLDCIQ  L  +S+CP+C    W+FA    + GY
Sbjct:   90 CAICRNSITEPSIEYQANPAPSNNNGLSIAFGTCGHVFHLDCIQRWLKTRSVCPLC-GAEWDFAKNERIPGY 160          
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A087SLR5_AUXPR (E3 ubiquitin-protein ligase RBX1 (Fragment) n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SLR5_AUXPR)

HSP 1 Score: 87.0 bits (214), Expect = 1.080e-19
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0
Query:   41 CLLCCNNLSDPSVKYQANPSKE-NASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAI 106
            C +C NNL +PS++YQANPS + +  GL IA GSCGHVFHLDCIQ  L  +S CP+C NK WEF+ I
Sbjct:   47 CAICRNNLYEPSIEYQANPSGDPDHPGLSIAWGSCGHVFHLDCIQRWLKTRSACPLC-NKEWEFSKI 112          
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A830HL03_9CHLO (RING-box protein 1 n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HL03_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 2.980e-19
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0
Query:   41 CLLCCNNLSDPSVKYQANPSKENAS-GLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAI 106
            C +C NNL +PS++YQANP+ +N   GL IA G CGHVFHLDCIQ  L  +S+CP+C +K WEFA I
Sbjct:   47 CAICRNNLYEPSIEYQANPTYDNDHPGLSIAWGCCGHVFHLDCIQRWLKTRSVCPLC-SKEWEFAKI 112          
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A5J4XZ32_9CHLO (RING-box 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XZ32_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 3.310e-19
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0
Query:   41 CLLCCNNLSDPSVKYQANPSKE-NASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAI 106
            C +C NNL +PS++YQANP+ + +  GL IA G+CGHVFHLDCIQ  L  +S CP+C NK WEFA I
Sbjct:   50 CAICRNNLYEPSIEYQANPTGDADHPGLSIAWGNCGHVFHLDCIQRWLKTRSACPLC-NKEWEFAKI 115          
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A250X7T1_9CHLO (RING-type domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X7T1_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 3.770e-19
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0
Query:   41 CLLCCNNLSDPSVKYQANPSKE-NASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAI 106
            C +C NNL +PS++YQANP+ + +  GL IA G+CGHVFHLDCIQ  L  +S CP+C NK WEFA I
Sbjct:   54 CAICRNNLYEPSIEYQANPTGDPDHPGLSIAWGNCGHVFHLDCIQRWLKTRSACPLC-NKEWEFAKI 119          
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Match: A0A2P6VGN8_9CHLO (RING-box 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VGN8_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 6.130e-19
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0
Query:   41 CLLCCNNLSDPSVKYQANPSKE-NASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKGWEFAAIIHLKG 111
            C +C NNL +PS++YQANP+ + +  GL IA G+CGHVFHLDCIQ  L  +S CP+C N+ WEF+ I  + G
Sbjct:   49 CAICRNNLYEPSIEYQANPTGDADHPGLSIAWGTCGHVFHLDCIQRWLKTRSACPLC-NREWEFSKIERIVG 119          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.946.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G6S6_ECTSI5.770e-7290.60RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A4D9CQ35_9STRA5.550e-2358.33RING-type domain-containing protein n=3 Tax=Monodo... [more]
K0TN28_THAOC7.550e-2356.94RING-type domain-containing protein (Fragment) n=1... [more]
K0TCT4_THAOC3.030e-2256.94RING-type domain-containing protein n=1 Tax=Thalas... [more]
K0SGL2_THAOC1.060e-1951.39RING-type domain-containing protein n=1 Tax=Thalas... [more]
A0A087SLR5_AUXPR1.080e-1961.19E3 ubiquitin-protein ligase RBX1 (Fragment) n=2 Ta... [more]
A0A830HL03_9CHLO2.980e-1959.70RING-box protein 1 n=1 Tax=Pycnococcus provasolii ... [more]
A0A5J4XZ32_9CHLO3.310e-1959.70RING-box 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=260899... [more]
A0A250X7T1_9CHLO3.770e-1959.70RING-type domain-containing protein n=1 Tax=Chlamy... [more]
A0A2P6VGN8_9CHLO6.130e-1954.17RING-box 1 n=1 Tax=Micractinium conductrix TaxID=5... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 41..96
e-value: 0.0013
score: 28.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 41..97
score: 10.571
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 40..97
e-value: 6.2E-13
score: 48.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 25..106
e-value: 6.0E-14
score: 53.9
NoneNo IPR availablePANTHERPTHR11210RING BOXcoord: 37..104
NoneNo IPR availablePANTHERPTHR11210:SF2E3 UBIQUITIN-PROTEIN LIGASE RBX1coord: 37..104
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 40..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig104contigEcto-sp6_S_contig104:247895..249452 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig104.946.1mRNA_Ecto-sp6_S_contig104.946.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig104 247278..249452 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig104.946.1 ID=prot_Ecto-sp6_S_contig104.946.1|Name=mRNA_Ecto-sp6_S_contig104.946.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=118bp
MSEMAEGVKGQEAQDVGMVESGKGPEPGTEEEAPLQEVRKCLLCCNNLSD
PSVKYQANPSKENASGLIIATGSCGHVFHLDCIQECLMNQSLCPVCENKG
WEFAAIIHLKGYPRVES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR024766Znf_RING_H2
IPR013083Znf_RING/FYVE/PHD