prot_Ecto-sp6_S_contig10.602.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig10.602.1
Unique Nameprot_Ecto-sp6_S_contig10.602.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length86
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 4.470e-41
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63          
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.910e-39
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYLSLLQADY+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   33 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYN 95          
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS)

HSP 1 Score: 131 bits (330), Expect = 1.330e-38
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYL LLQADY+EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYN 63          
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN)

HSP 1 Score: 131 bits (330), Expect = 1.910e-38
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWE+YL LL+ADY+EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63          
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.350e-38
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVI NKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 63          
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A7R9WWK7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWK7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.520e-38
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   74 MIIPVRCFTCGKVIGNKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 136          
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.030e-38
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYL LLQ+D +EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63          
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A7S4EET2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EET2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.190e-38
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVI NKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   34 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 96          
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 7.560e-38
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKV+GNKW++YL LL+ADY+EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63          
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: W4GLT6_9STRA (DNA-directed RNA polymerase I, II, and III subunit rpabc5 n=12 Tax=Oomycota TaxID=4762 RepID=W4GLT6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.020e-37
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNWGVV 67
            MI+PVRCFTCGKV+ NKWETYLSLL+ADY EGDALDEL LKRYCCRRM+LTHVDLIEKLL+YN G +
Sbjct:    1 MIVPVRCFTCGKVLANKWETYLSLLRADYTEGDALDELSLKRYCCRRMLLTHVDLIEKLLHYNTGAI 67          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK4_9PHAE4.470e-41100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1V7Q3_9STRA1.910e-3996.83Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
B8C402_THAPS1.330e-3893.65DNA directed RNA polymerase II subunit, 8.2kDa, rp... [more]
F0YLY9_AURAN1.910e-3893.65Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1E7EXD3_9STRA2.350e-3893.65DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7R9WWK7_9STRA2.520e-3895.24Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A836CHW2_9STRA5.030e-3893.65DNA-directed RNA polymerase I, II, and III subunit... [more]
A0A7S4EET2_9STRA6.190e-3893.65Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A8J2SAT8_9STRA7.560e-3890.48Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W4GLT6_9STRA4.020e-3783.58DNA-directed RNA polymerase I, II, and III subunit... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 1..65
e-value: 7.2E-39
score: 133.7
NoneNo IPR availablePANTHERPTHR23431:SF5coord: 1..63
NoneNo IPR availablePRODOMPD006539coord: 9..63
e-value: 9.0E-18
score: 215.0
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PFAMPF01194RNA_pol_Ncoord: 1..59
e-value: 1.2E-33
score: 115.2
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PANTHERPTHR23431FAMILY NOT NAMEDcoord: 1..63
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10HAMAPMF_00250RNApol_arch_Ncoord: 1..63
score: 19.982
IPR020789RNA polymerases, subunit N, zinc binding sitePROSITEPS01112RNA_POL_N_8KDcoord: 2..11
IPR023580RNA polymerase subunit RPB10SUPERFAMILY46924RNA polymerase subunit RPB10coord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1913154..1914159 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.602.1mRNA_Ecto-sp6_S_contig10.602.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig10 1912074..1914228 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig10.602.1 ID=prot_Ecto-sp6_S_contig10.602.1|Name=mRNA_Ecto-sp6_S_contig10.602.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=86bp
MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVL
THVDLIEKLLNYNWGVVPYVKWLRSRAPDGQIRNS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000268RNAP_N/Rpb10
IPR020789RNA_pol_suN_Zn-BS
IPR023580RNA_pol_su_RPB10