mRNA_Ecto-sp6_S_contig10.602.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.830e-36 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1
Query: 70 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 258
MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA) HSP 1 Score: 133 bits (335), Expect = 7.100e-35 Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1
Query: 70 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 258
MIIPVRCFTCGKVIGNKWETYLSLLQADY+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct: 33 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYN 95
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS) HSP 1 Score: 130 bits (326), Expect = 4.400e-34 Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1
Query: 70 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 258
MIIPVRCFTCGKVIGNKWETYL LLQADY+EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYN 63
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN) HSP 1 Score: 130 bits (326), Expect = 6.330e-34 Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1
Query: 70 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 258
MIIPVRCFTCGKVIGNKWE+YL LL+ADY+EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN
Sbjct: 1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA) HSP 1 Score: 129 bits (325), Expect = 7.700e-34 Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1
Query: 70 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 258
MIIPVRCFTCGKVI NKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct: 1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 63
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A7R9WWK7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWK7_9STRA) HSP 1 Score: 132 bits (331), Expect = 8.900e-34 Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1
Query: 70 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 258
MIIPVRCFTCGKVIGNKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct: 74 MIIPVRCFTCGKVIGNKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 136
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.600e-33 Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1
Query: 70 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 258
MIIPVRCFTCGKVIGNKWETYL LLQ+D +EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A7S4EET2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EET2_9STRA) HSP 1 Score: 129 bits (325), Expect = 2.030e-33 Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1
Query: 70 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 258
MIIPVRCFTCGKVI NKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct: 34 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 96
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA) HSP 1 Score: 128 bits (322), Expect = 2.380e-33 Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1
Query: 70 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 258
MIIPVRCFTCGKV+GNKW++YL LL+ADY+EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN
Sbjct: 1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Match: A0A091D7D0_FUKDA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=1 Tax=Fukomys damarensis TaxID=885580 RepID=A0A091D7D0_FUKDA) HSP 1 Score: 127 bits (320), Expect = 6.240e-33 Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 1
Query: 40 SPHTCTASSTMIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNY 255
+P C A +TMIIPVRCFTCGK++GNKWE YL LLQA+Y EGDALD LGLKRYCCRRM+L HVDLIEKLLNY
Sbjct: 10 TPQGCRAVATMIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNY 81 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.602.1 >prot_Ecto-sp6_S_contig10.602.1 ID=prot_Ecto-sp6_S_contig10.602.1|Name=mRNA_Ecto-sp6_S_contig10.602.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=86bp MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLback to top mRNA from alignment at Ecto-sp6_S_contig10:1912074..1914228- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.602.1 ID=mRNA_Ecto-sp6_S_contig10.602.1|Name=mRNA_Ecto-sp6_S_contig10.602.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2155bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1912074..1914228- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1912074..1914228- >mRNA_Ecto-sp6_S_contig10.602.1 ID=mRNA_Ecto-sp6_S_contig10.602.1|Name=mRNA_Ecto-sp6_S_contig10.602.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1912074..1914228- (Ectocarpus species6 EcLAC_371)back to top |