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Homology
BLAST of mRNA_Ecto-sp6_S_contig99.18857.1 vs. uniprot
Match: D8LSX6_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSX6_ECTSI) HSP 1 Score: 298 bits (763), Expect = 1.820e-90 Identity = 273/278 (98.20%), Postives = 274/278 (98.56%), Query Frame = 1
Query: 301 MLVHQAQQSQVVAAGPASRKSLGGGCRPPPSLQREPAVALDLDNMFGEEPPSPSPRDELPAEAMKTGQWCERNSVALLEACCNRDVGKAARILGQASAEHVGEERMKNMVMLKDDFRDTALHLSACQGEVGIVKLLLARGADVHAQNNLGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASWIGNFCKKKIARLLSTEST 1134
MLVHQAQQSQVVAAGPASRKSLGGGCRPPPSLQ EPAVALDLD+MFGEEPPS SPRDELPAE MKTGQWCERNSVALLEACCNRDVGKAARILGQASAEHVGEERMKNMVMLKDDFRDTALHLSACQGEVGIVKLLLARGADVHAQNNLGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASWIGN CKKKIARLLSTEST
Sbjct: 1 MLVHQAQQSQVVAAGPASRKSLGGGCRPPPSLQLEPAVALDLDSMFGEEPPSSSPRDELPAEVMKTGQWCERNSVALLEACCNRDVGKAARILGQASAEHVGEERMKNMVMLKDDFRDTALHLSACQGEVGIVKLLLARGADVHAQNNLGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASWIGNSCKKKIARLLSTEST 278
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 298.5 |
| Seed ortholog evalue | 3.2e-78 |
| Seed eggNOG ortholog | 2880.D8LSX6 |
| Model size | 2836 |
| KEGG ko | ko:K15504 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| EggNOG free text desc. | proteasome regulatory particle assembly |
| EggNOG OGs | COG0666@1,KOG4412@2759 |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-26_001790.1 |
| Cds size | 837 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01009,ko03400 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350612.2892902-UTR-Ecto-sp6_S_contig99:412078..412378 | 1682350612.2892902-UTR-Ecto-sp6_S_contig99:412078..412378 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig99 412079..412378 + |
| 1682350612.3531382-UTR-Ecto-sp6_S_contig99:416756..418455 | 1682350612.3531382-UTR-Ecto-sp6_S_contig99:416756..418455 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig99 416757..418455 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350612.3001058-CDS-Ecto-sp6_S_contig99:412378..412643 | 1682350612.3001058-CDS-Ecto-sp6_S_contig99:412378..412643 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig99 412379..412643 + |
| 1682350612.3189769-CDS-Ecto-sp6_S_contig99:415373..415600 | 1682350612.3189769-CDS-Ecto-sp6_S_contig99:415373..415600 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig99 415374..415600 + |
| 1682350612.3323097-CDS-Ecto-sp6_S_contig99:415796..416003 | 1682350612.3323097-CDS-Ecto-sp6_S_contig99:415796..416003 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig99 415797..416003 + |
| 1682350612.3437142-CDS-Ecto-sp6_S_contig99:416618..416756 | 1682350612.3437142-CDS-Ecto-sp6_S_contig99:416618..416756 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig99 416619..416756 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig99.18857.1 >prot_Ecto-sp6_S_contig99.18857.1 ID=prot_Ecto-sp6_S_contig99.18857.1|Name=mRNA_Ecto-sp6_S_contig99.18857.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=279bp
MLVHQAQQSQVVAAGPASRKSLGGGCRPPPSLQREPAVALDLDNMFGEEP PSPSPRDELPAEAMKTGQWCERNSVALLEACCNRDVGKAARILGQASAEH VGEERMKNMVMLKDDFRDTALHLSACQGEVGIVKLLLARGADVHAQNNLG STPLNRAAVAGRTEVVELLLDAGANLEHQDDISGTSLHGAARRNHCSTVR LLLNRGASVDAADGVGNRPLHLASAEGAISALGVLVNHYADPQVKNIRGQ TPLDVAQASWIGNFCKKKIARLLSTEST* back to topmRNA from alignment at Ecto-sp6_S_contig99:412079..418455+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig99.18857.1 ID=mRNA_Ecto-sp6_S_contig99.18857.1|Name=mRNA_Ecto-sp6_S_contig99.18857.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6377bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:412079..418455+ (Ectocarpus species6 EcLAC_371) CTCTGCTTTTCGGGCACTCCCCGCCCCCCTGCTCGTGCTCCTCCTTTCTG
CTGCCGAACATTGGAGTGCTTGGGGGTGCTGTTATATTCTAGGGGAGAGG
CAGAACGCGCACCGCACGCGCGCACCGGCTTGGTCGTTCGAGAGTCATCA
TCATCAACACGCCGCCGCCGAACCGAACCAAGATTTGATACGAGATCAGA
GGACGGGCGGTCCGTGTGTTCCTTTTCCCTACAGCCGGGGTTGCGTGCGC
TATCCGACTTCGGCTACCAACGCGAAAGGGCACGCTGATCCACGGGCAGC
ATGCTCGTGCACCAAGCGCAGCAGTCTCAGGTCGTGGCGGCAGGCCCCGC
TTCGCGCAAGTCCCTCGGCGGCGGATGCCGACCGCCGCCCTCGTTGCAGC
GAGAACCAGCAGTTGCCCTTGACTTGGACAACATGTTCGGCGAGGAGCCA
CCCTCACCCTCTCCACGAGACGAGCTACCCGCGGAGGCGATGAAGACGGG
CCAGTGGTGCGAGAGGAACTCTGTGGCTCTCCTGGAGGCGTGCTGCAACC
GCGACGTCGGAAAAGGTGTGTACTACAGTCGCGAGCGAGCTCCGAGACAA
ACGTATGCATGTGTCCGTCTGTTCGCGATTCCATTATCGTCCGGTTGAAG
TTCTCCGAATATCGGTTGAGCCGCAACTGCTAGCTGGGTTGTGGCTGACC
AGCAACCCCCCCCCCGCCCCTCTCTCGTCTCTCCAGTGCCTCCGTGATTG
GGGCATCTTACAGCGAGTCCTCGTTGTTGGCGTTGCAAATAATGTCGTTC
GCTAGAAAATTGTGCCAAAGATTTTCAACGTAGATTTTTAGCAAACACCA
CGACGTGGCGGCGTGGCATCATGGGCGCGGGAGAACTTCGTGGGACGTAC
GCATACGATCAGTCCATAAACCCCGCTTTTATTTTTGGACGGTACGCGCC
CCGACGCCCACCCGCATTCGCTGTTAACTACCAAACGCGCTGCGTGCTGT
CGGTCGAACGCCGCATAAAGGCGCGCACGTTGGCTCTCTTGTCAAGTTTT
CAGTCTCTCGATAATTCATAACTCCTTCTGCTGCCGATAAAAGTATCCGT
GTGAAATTTCGGGCGTGTCTCAAAGATACCGATGACCTCCATTACCACTC
GCGGGGGGTCCACTCTACATATCATAGAAAATCACAGCAGTAGTGAGCTT
CTGTCAGGGTAGCCCTCGCGACTGCTGCAAACTCCCTCAGGCTCTTGTCC
AAGTAGTACATAGGCATGGCATAGGTTGCTGTCCGTCTTCTTCGACGTTG
AACTTTCCACCACCCAACCCATTGTACGCATTACCGATAGTAGCAGTAGT
ACTATACGGTCCAACTACATATCTGTAACAGACAGCAGTACAATATGTAG
TGACGTGCCGTCTTCTCGAAAATTGGTCTACCTGGAACAAGGCAGTGGTC
CACACATGCCGGGTTATTTACAGGGGCAAACGACAACTCGCACCGCGGAG
CCTCTGAGTACCTCTTAGCCGATCATGTTGCGGCTGGAATCACGGATTTC
TCGCGGTGGAATACACAGCTCAATAGATCATGTGCGTATCATCGAGCAGG
GGGTCACTTCACACCCTTACAACGGAATTTTTTTCAACACATCCTTTGGG
ACGGATGTTATCTGCAATGGGTACATACCATGGTATGTAGTTTTCCTGGG
TGATAACAGCAATGGGCGAAACTGACCCTTCAACATCAATCTGCAAGAAC
TTGCACGCATTATCTGCAGATTTTGACCGTTCACCCAATCAGAGGACACT
GCACTTCAGCTGTTGGCCAGCACAACCCTCTGGTTCCCCAACGTCAGGAC
TTCACGAGACTTACGACTCCAGCGCCCAATACAGCGGCTGATTTTCTTCC
TGTTTTTTCCTGATATGACACAACAAACAAAATCCATCTCGTATCCGTAG
AAAAAGGAGTCTGAGATAGATTGTAGCAATGAATCCGAATCAGAGAAAGC
TACCTGTATTTCTACGGTTTCCCGAGCAGCACACAGCTATGCTATATCTC
CCCTGTGGGTAGCAGGCTCAACACGATAGCTGTTTTGGGTAATGCTTCTT
TTTCGGTTTTGGGGACGCAATATATCCGGCAGATATTTAGCATACATACG
TGGTACATGAATGTATTTGCAATTTCTCACTGCAAGGACTTCAACATGCC
CTTTGAGGAGCTGTCTCGAACGAGTTATGGTGATCCTGTGATGTTTGGCG
CACTGCTGTACATACCACTTTTTCTTGTAAATTTTACCATCATTGGGGGC
ATGTGTTTTTATGTGTTGCATCCGTGAGTCTTGGCTGCAGCACAACCGAC
AACGTCGCGAGGCATGCAGAAGCGATGCGTCAGGTGGTTACAATCGAATG
CACGGCGGCAGTAGTTTGCAGCTATTAGAAAAAAATCACATGCTTCTGCT
GTACCACAATCAATATGAAGGCACCACCCCAATGGCTATTTAGCGGAGAT
GATGAGGAGGGGGGGTTGTAAGCTGCTCGTGTGCTGCCAACGCAGCTTGC
CGATAGAACGCACCACGACAGTGTTGACGGTGAACAATGCTGCATTTTTT
TTTTCGCAATAACATATGTGTCTTAACTTGCTGGTGTGCTTTCCCCGGAG
TTCATGGCAAGGAGGCCTGTCCTATTCGAACACTCACACACCCCAAGGGG
GCAAGTGCAGAACCTCTAGCGCGACCGAAACGCAGTAGGCAATTGTTTGC
CGGAGACATCGGGTAGACCTGGGTCAGGATGGGTAAACAGCAGCAGCGCT
AGCAGGGGAAGGTTGTACGCTTATTTGCAGAGCCGAAGTGTCAGTAGCTG
TTGCTCGTGCGCCCGCTGCTGTGTCGGATTGTTTATTTCTCCTGCCTCCC
CGATTTTGGGCACTCGCAATAAAACTCTATCGACAACCCTTGCTTCTCCG
ATGCATTCTATGGATGACCTCTGTTACCTGCTGTTGTTTCATGTTGCATC
AGCACCCCCTTGATGGCAGACACAGTTGCGCTCTCACGAGCACACTCCGG
AGGGCAGAGGTACAGCAGTAGAGGTCCCTGTTTATCGCCGGCAAGTACCC
AGAAAAATCACGGGCTCTATACGGGACACCGCCATACGGTAGGTTTTAGT
TACAGGAGTAGTGCAGAGGTTGGGCCGGCACTACACAGGTACCTCTACGT
TTTTATCTCTCCGGAGAGTACGTACGTAACACTTTTTTAAACGACGCGTG
CGTGGAAACACGCTTCCTCCCGTCCATCACCGTGTGCACCCCCAGCCGCT
CGTATACTGGGACAAGCCTCGGCGGAGCACGTGGGCGAGGAGAGGATGAA
AAATATGGTGATGCTGAAAGACGACTTCCGAGATACCGCGCTCCACCTCA
GCGCCTGCCAGGGCGAGGTGGGCATCGTGAAGCTGCTGCTGGCGAGAGGG
GCGGACGTCCACGCGCAGAACAACCTCGGGAGCACCCCGCTGAACCGCGC
GGCGGTAGCTGGAAGGACCGAGGTACTCCGCACAACCTTTTTTTCCTTTT
TGTCTCCGTCAGATAATTTCCTCGGACCCAGGCACATCTCAATGGGGATA
AGACGCATGCGTGTTGAACAGCGGGTGCGCACACGTGGTATCGGACATGA
AGCTCCTACGTATTAATAATGAAAATACTGCCGTCGTGTGTGCCATGGCT
TTTTTTTTTTTCCGGCAGGTGGTCGAGCTCCTTCTGGACGCAGGGGCCAA
CCTCGAGCACCAGGACGACATCTCGGGCACTTCTCTGCACGGCGCCGCGC
GGCGCAACCACTGCTCCACCGTCCGCCTCCTCCTCAACCGCGGTGCCTCC
GTGGACGCCGCAGACGGCGTCGGAAACAGGCCGCTGCACTTGGCATCTGC
CGAGGGAGCCATCTCCGCACTCGGGGTGCGTATACATCCAATACTCTTTT
TTTGTTATTTCTTTGTTGTTGTTGATCGCTCTCTTACGTTTATGACCAAA
ACCGATGTTATACATGGCTTTTTATCCCTCTCTTTATATTTTTTTGGTTC
GTTTGAGTGTGTTGATCCCTTTCTTAGTAGAAATTTACACGCAATCACAG
AAAAACTGGACGACCCGTTCGAGATCTAAACCCGTTCTATTTGTTTGACG
ATATGAATGTATTTTGTTTTGACCAGTCCCTTTCGTTTTAGGTCAAGAGT
TTGCGCGAGAGAAGCGATCCTTACATGGAATGAAACGGTTGAAGTTAAAT
GTCGAATGGTGTGTCTGGGTGGATTGAGTGTCCTCTATTGTGGGCATCTA
CTTCGCCTTGTTTCAGAATCTTGCCGATGTCATGCCGGATAGTTTGCCTG
GGTGGGACACACTTCACCCGGCTATCGATGATCGACAAAAAGGGTGTGCT
ATTATAGTCAGCCAGCTGAGAAAATGCCCCCATTTGAACAGTCATGCGGC
TAAGAAAATGCCCCAATTTTACTTGGTTGTACCCAACTGCTCTACTGCCC
TCCTCTGCTTTGCCCCCACCCCAACGTTTCGGATCGCCAGGTTCTTGTGA
ATCACTACGCCGACCCACAGGTGAAGAACATCAGAGGCCAGACGCCGCTG
GACGTTGCCCAGGCTTCTTGGATCGGGAACTTCTGCAAGAAGAAGATCGC
TCGCCTCCTCTCCACGGAGAGCACCTGAGGGCGTCAGCCGGGCGGGTTTC
GGACAGCCAAGGGGGACTACCTGCTGCTGTCGTCTCTTGAAAAATGGAGA
GCGCCTGAGGCGGGGCTTCGGACAGCCAAAGAAGACTGCTGCTGTCATCT
GTTACATGTACGTGAGGCAGGCGGGCTTCGGACAGCAATGAAGAGAGAAG
GACTACCTACCGCTGTCATCTGTTACGACGTCGGTGTCGTCCGTGTAAAC
GCGCTGCGCTGGGAATGCCAAGTGCCTCTGAGCACGAGACGGCAGAGGTT
CTTGTACTCCTTAGTTTCGTCTTCCGTCTTCTTTTTTTTACATGCGCTTG
CCGAACTCTCTTTGGGAATAAGAAAAGAATAACCTTTTGTGTTCCTGGTC
TGTTCGCCTTTAGACTCGTCCTTGAGAACGCTAGATAACAGCTGATTTTT
GTCGTTTTCGTTTTTGCAGGAAAAAAGGCTCGGCGGGAGCTGAGCGGGTT
GGTTGTGCCCCGGGCCGATTGCTGACTGACGCAACCTTGAAAATTGGCGT
ACTGTTGTCTTTTGTTTTTTTCTATCGTACGAAATAATGAGTCATGTATC
TATCTAAATATCTCTGCATCCGCGACACGCGATTTTAGCCTTGATGTCAC
GAGCAGACGGCCTGACTTCTGTTCGACAAGATCGAATCGGAAAGGAAGGT
GTTCGGGTTTTTCTGTCGAGTTCATTTTATTTATGTTTTGTTCGTGCGCC
GCCCATCGGGCCAACCTTGTATCGAGTGGACCGTGTGCCTCATGCCACGT
GTGTGTCATCTAAAGAAATTTGCAATATACGGGCGTGTGTTTATCGGAAA
AGAGAAAAAATATCGTCTCCAAGTGTACATATCGCCACCGGGCGCAACTG
CTTCGTTCTTGTTTTTTTTTCAGCGGAACAGAAACGAACGGGAGGCATCT
TGTTCAACCCACTCGTTGAACGTGCGGCCGCCCTTGAGCAAATGCCAAAG
GGGGGTTAAAGTTGAGGGCAAAATCAGGCATGTACGGTAGTAGCAAGGAG
ACTGCCACCGTTCTCTTATTTTCTTGTTTCAGCCTCTACCTCCACGCTCG
GATTTTCCACGGAATCTTTTTTTGTGCTTGGAGGAGGAGTTTTTTTCCTT
CCTACAAGACGTGCGTGCGAAGCGAACGCACAGGAAAAATGGGGCCTGGG
GGGGCGTACTCTTGTGTTTTGCATCCCTTAGCGGTTAAACCATTGACCAC
GCGTCCTAAAGGGGCTGGGGGGGAAAAACCGAGCGGAAAAATGTATGCAT
GCGTATTTTTCGATTCATGTATTTTTGTACTTATGTATTCGCTTGAACCA
AGAGCGGGCGAGTAAGAACGTGTAGATCGCTGTCTTCGCCGTTTTCCTTA
CAGCAAGGGGCAGGACGGCTGGGCTGTAGCGCGATCGAGGAGGTTCTAGT
CTTTGTGCGCGTCTTTTATTGGTCAGGCTCTAGATTCCTTACAGTACAGT
TTTTTTTTTTTACTTTCTTTCGAGAGACGCCAGGCATGGTGTTCTCCTGT
CTGGAGCTGTACACACAAAAAAAGTCATTGCTTTCTGCTGTTCATCCATC
CATGGTACATATGGAGTTGCCCCGTAGCGCTGCTCCGTAAGTTGTTGTTT
TTTTCCAACTTTTTTTGTGCAGCTCGTTGGGACTCTGGGTGCGTGCCACC
CCACCCCCCTATCGATTTTTTGCCAAA back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig99:412079..418455+ >mRNA_Ecto-sp6_S_contig99.18857.1 ID=mRNA_Ecto-sp6_S_contig99.18857.1|Name=mRNA_Ecto-sp6_S_contig99.18857.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:412079..418455+ (Ectocarpus species6 EcLAC_371) ATGCTCGTGCACCAAGCGCAGCAGTCTCAGGTCGTGGCGGCAGGCCCCGC TTCGCGCAAGTCCCTCGGCGGCGGATGCCGACCGCCGCCCTCGTTGCAGC GAGAACCAGCAGTTGCCCTTGACTTGGACAACATGTTCGGCGAGGAGCCA CCCTCACCCTCTCCACGAGACGAGCTACCCGCGGAGGCGATGAAGACGGG CCAGTGGTGCGAGAGGAACTCTGTGGCTCTCCTGGAGGCGTGCTGCAACC GCGACGTCGGAAAAGCCGCTCGTATACTGGGACAAGCCTCGGCGGAGCAC GTGGGCGAGGAGAGGATGAAAAATATGGTGATGCTGAAAGACGACTTCCG AGATACCGCGCTCCACCTCAGCGCCTGCCAGGGCGAGGTGGGCATCGTGA AGCTGCTGCTGGCGAGAGGGGCGGACGTCCACGCGCAGAACAACCTCGGG AGCACCCCGCTGAACCGCGCGGCGGTAGCTGGAAGGACCGAGGTGGTCGA GCTCCTTCTGGACGCAGGGGCCAACCTCGAGCACCAGGACGACATCTCGG GCACTTCTCTGCACGGCGCCGCGCGGCGCAACCACTGCTCCACCGTCCGC CTCCTCCTCAACCGCGGTGCCTCCGTGGACGCCGCAGACGGCGTCGGAAA CAGGCCGCTGCACTTGGCATCTGCCGAGGGAGCCATCTCCGCACTCGGGG TTCTTGTGAATCACTACGCCGACCCACAGGTGAAGAACATCAGAGGCCAG ACGCCGCTGGACGTTGCCCAGGCTTCTTGGATCGGGAACTTCTGCAAGAA GAAGATCGCTCGCCTCCTCTCCACGGAGAGCACCTGA back to top
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