mRNA_Ecto-sp6_S_contig99.18857.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18857.1
Unique NamemRNA_Ecto-sp6_S_contig99.18857.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig99.18857.1 vs. uniprot
Match: D8LSX6_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSX6_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 1.820e-90
Identity = 273/278 (98.20%), Postives = 274/278 (98.56%), Query Frame = 1
Query:  301 MLVHQAQQSQVVAAGPASRKSLGGGCRPPPSLQREPAVALDLDNMFGEEPPSPSPRDELPAEAMKTGQWCERNSVALLEACCNRDVGKAARILGQASAEHVGEERMKNMVMLKDDFRDTALHLSACQGEVGIVKLLLARGADVHAQNNLGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASWIGNFCKKKIARLLSTEST 1134
            MLVHQAQQSQVVAAGPASRKSLGGGCRPPPSLQ EPAVALDLD+MFGEEPPS SPRDELPAE MKTGQWCERNSVALLEACCNRDVGKAARILGQASAEHVGEERMKNMVMLKDDFRDTALHLSACQGEVGIVKLLLARGADVHAQNNLGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASWIGN CKKKIARLLSTEST
Sbjct:    1 MLVHQAQQSQVVAAGPASRKSLGGGCRPPPSLQLEPAVALDLDSMFGEEPPSSSPRDELPAEVMKTGQWCERNSVALLEACCNRDVGKAARILGQASAEHVGEERMKNMVMLKDDFRDTALHLSACQGEVGIVKLLLARGADVHAQNNLGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASWIGNSCKKKIARLLSTEST 278          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSX6_ECTSI1.820e-9098.20Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSX6... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:412079..418455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score298.5
Seed ortholog evalue3.2e-78
Seed eggNOG ortholog2880.D8LSX6
Model size2836
KEGG koko:K15504
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.proteasome regulatory particle assembly
EggNOG OGsCOG0666@1,KOG4412@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_001790.1
Cds size837
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18857.1prot_Ecto-sp6_S_contig99.18857.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 412379..416756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350612.2892902-UTR-Ecto-sp6_S_contig99:412078..4123781682350612.2892902-UTR-Ecto-sp6_S_contig99:412078..412378Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 412079..412378 +
1682350612.3531382-UTR-Ecto-sp6_S_contig99:416756..4184551682350612.3531382-UTR-Ecto-sp6_S_contig99:416756..418455Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 416757..418455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350612.3001058-CDS-Ecto-sp6_S_contig99:412378..4126431682350612.3001058-CDS-Ecto-sp6_S_contig99:412378..412643Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 412379..412643 +
1682350612.3189769-CDS-Ecto-sp6_S_contig99:415373..4156001682350612.3189769-CDS-Ecto-sp6_S_contig99:415373..415600Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 415374..415600 +
1682350612.3323097-CDS-Ecto-sp6_S_contig99:415796..4160031682350612.3323097-CDS-Ecto-sp6_S_contig99:415796..416003Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 415797..416003 +
1682350612.3437142-CDS-Ecto-sp6_S_contig99:416618..4167561682350612.3437142-CDS-Ecto-sp6_S_contig99:416618..416756Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 416619..416756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18857.1

>prot_Ecto-sp6_S_contig99.18857.1 ID=prot_Ecto-sp6_S_contig99.18857.1|Name=mRNA_Ecto-sp6_S_contig99.18857.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=279bp
MLVHQAQQSQVVAAGPASRKSLGGGCRPPPSLQREPAVALDLDNMFGEEP
PSPSPRDELPAEAMKTGQWCERNSVALLEACCNRDVGKAARILGQASAEH
VGEERMKNMVMLKDDFRDTALHLSACQGEVGIVKLLLARGADVHAQNNLG
STPLNRAAVAGRTEVVELLLDAGANLEHQDDISGTSLHGAARRNHCSTVR
LLLNRGASVDAADGVGNRPLHLASAEGAISALGVLVNHYADPQVKNIRGQ
TPLDVAQASWIGNFCKKKIARLLSTEST*
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mRNA from alignment at Ecto-sp6_S_contig99:412079..418455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18857.1 ID=mRNA_Ecto-sp6_S_contig99.18857.1|Name=mRNA_Ecto-sp6_S_contig99.18857.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6377bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:412079..418455+ (Ectocarpus species6 EcLAC_371)
CTCTGCTTTTCGGGCACTCCCCGCCCCCCTGCTCGTGCTCCTCCTTTCTG CTGCCGAACATTGGAGTGCTTGGGGGTGCTGTTATATTCTAGGGGAGAGG CAGAACGCGCACCGCACGCGCGCACCGGCTTGGTCGTTCGAGAGTCATCA TCATCAACACGCCGCCGCCGAACCGAACCAAGATTTGATACGAGATCAGA GGACGGGCGGTCCGTGTGTTCCTTTTCCCTACAGCCGGGGTTGCGTGCGC TATCCGACTTCGGCTACCAACGCGAAAGGGCACGCTGATCCACGGGCAGC ATGCTCGTGCACCAAGCGCAGCAGTCTCAGGTCGTGGCGGCAGGCCCCGC TTCGCGCAAGTCCCTCGGCGGCGGATGCCGACCGCCGCCCTCGTTGCAGC GAGAACCAGCAGTTGCCCTTGACTTGGACAACATGTTCGGCGAGGAGCCA CCCTCACCCTCTCCACGAGACGAGCTACCCGCGGAGGCGATGAAGACGGG CCAGTGGTGCGAGAGGAACTCTGTGGCTCTCCTGGAGGCGTGCTGCAACC GCGACGTCGGAAAAGGTGTGTACTACAGTCGCGAGCGAGCTCCGAGACAA ACGTATGCATGTGTCCGTCTGTTCGCGATTCCATTATCGTCCGGTTGAAG TTCTCCGAATATCGGTTGAGCCGCAACTGCTAGCTGGGTTGTGGCTGACC AGCAACCCCCCCCCCGCCCCTCTCTCGTCTCTCCAGTGCCTCCGTGATTG GGGCATCTTACAGCGAGTCCTCGTTGTTGGCGTTGCAAATAATGTCGTTC GCTAGAAAATTGTGCCAAAGATTTTCAACGTAGATTTTTAGCAAACACCA CGACGTGGCGGCGTGGCATCATGGGCGCGGGAGAACTTCGTGGGACGTAC GCATACGATCAGTCCATAAACCCCGCTTTTATTTTTGGACGGTACGCGCC CCGACGCCCACCCGCATTCGCTGTTAACTACCAAACGCGCTGCGTGCTGT CGGTCGAACGCCGCATAAAGGCGCGCACGTTGGCTCTCTTGTCAAGTTTT CAGTCTCTCGATAATTCATAACTCCTTCTGCTGCCGATAAAAGTATCCGT GTGAAATTTCGGGCGTGTCTCAAAGATACCGATGACCTCCATTACCACTC GCGGGGGGTCCACTCTACATATCATAGAAAATCACAGCAGTAGTGAGCTT CTGTCAGGGTAGCCCTCGCGACTGCTGCAAACTCCCTCAGGCTCTTGTCC AAGTAGTACATAGGCATGGCATAGGTTGCTGTCCGTCTTCTTCGACGTTG AACTTTCCACCACCCAACCCATTGTACGCATTACCGATAGTAGCAGTAGT ACTATACGGTCCAACTACATATCTGTAACAGACAGCAGTACAATATGTAG TGACGTGCCGTCTTCTCGAAAATTGGTCTACCTGGAACAAGGCAGTGGTC CACACATGCCGGGTTATTTACAGGGGCAAACGACAACTCGCACCGCGGAG CCTCTGAGTACCTCTTAGCCGATCATGTTGCGGCTGGAATCACGGATTTC TCGCGGTGGAATACACAGCTCAATAGATCATGTGCGTATCATCGAGCAGG GGGTCACTTCACACCCTTACAACGGAATTTTTTTCAACACATCCTTTGGG ACGGATGTTATCTGCAATGGGTACATACCATGGTATGTAGTTTTCCTGGG TGATAACAGCAATGGGCGAAACTGACCCTTCAACATCAATCTGCAAGAAC TTGCACGCATTATCTGCAGATTTTGACCGTTCACCCAATCAGAGGACACT GCACTTCAGCTGTTGGCCAGCACAACCCTCTGGTTCCCCAACGTCAGGAC TTCACGAGACTTACGACTCCAGCGCCCAATACAGCGGCTGATTTTCTTCC TGTTTTTTCCTGATATGACACAACAAACAAAATCCATCTCGTATCCGTAG AAAAAGGAGTCTGAGATAGATTGTAGCAATGAATCCGAATCAGAGAAAGC TACCTGTATTTCTACGGTTTCCCGAGCAGCACACAGCTATGCTATATCTC CCCTGTGGGTAGCAGGCTCAACACGATAGCTGTTTTGGGTAATGCTTCTT TTTCGGTTTTGGGGACGCAATATATCCGGCAGATATTTAGCATACATACG TGGTACATGAATGTATTTGCAATTTCTCACTGCAAGGACTTCAACATGCC CTTTGAGGAGCTGTCTCGAACGAGTTATGGTGATCCTGTGATGTTTGGCG CACTGCTGTACATACCACTTTTTCTTGTAAATTTTACCATCATTGGGGGC ATGTGTTTTTATGTGTTGCATCCGTGAGTCTTGGCTGCAGCACAACCGAC AACGTCGCGAGGCATGCAGAAGCGATGCGTCAGGTGGTTACAATCGAATG CACGGCGGCAGTAGTTTGCAGCTATTAGAAAAAAATCACATGCTTCTGCT GTACCACAATCAATATGAAGGCACCACCCCAATGGCTATTTAGCGGAGAT GATGAGGAGGGGGGGTTGTAAGCTGCTCGTGTGCTGCCAACGCAGCTTGC CGATAGAACGCACCACGACAGTGTTGACGGTGAACAATGCTGCATTTTTT TTTTCGCAATAACATATGTGTCTTAACTTGCTGGTGTGCTTTCCCCGGAG TTCATGGCAAGGAGGCCTGTCCTATTCGAACACTCACACACCCCAAGGGG GCAAGTGCAGAACCTCTAGCGCGACCGAAACGCAGTAGGCAATTGTTTGC CGGAGACATCGGGTAGACCTGGGTCAGGATGGGTAAACAGCAGCAGCGCT AGCAGGGGAAGGTTGTACGCTTATTTGCAGAGCCGAAGTGTCAGTAGCTG TTGCTCGTGCGCCCGCTGCTGTGTCGGATTGTTTATTTCTCCTGCCTCCC CGATTTTGGGCACTCGCAATAAAACTCTATCGACAACCCTTGCTTCTCCG ATGCATTCTATGGATGACCTCTGTTACCTGCTGTTGTTTCATGTTGCATC AGCACCCCCTTGATGGCAGACACAGTTGCGCTCTCACGAGCACACTCCGG AGGGCAGAGGTACAGCAGTAGAGGTCCCTGTTTATCGCCGGCAAGTACCC AGAAAAATCACGGGCTCTATACGGGACACCGCCATACGGTAGGTTTTAGT TACAGGAGTAGTGCAGAGGTTGGGCCGGCACTACACAGGTACCTCTACGT TTTTATCTCTCCGGAGAGTACGTACGTAACACTTTTTTAAACGACGCGTG CGTGGAAACACGCTTCCTCCCGTCCATCACCGTGTGCACCCCCAGCCGCT CGTATACTGGGACAAGCCTCGGCGGAGCACGTGGGCGAGGAGAGGATGAA AAATATGGTGATGCTGAAAGACGACTTCCGAGATACCGCGCTCCACCTCA GCGCCTGCCAGGGCGAGGTGGGCATCGTGAAGCTGCTGCTGGCGAGAGGG GCGGACGTCCACGCGCAGAACAACCTCGGGAGCACCCCGCTGAACCGCGC GGCGGTAGCTGGAAGGACCGAGGTACTCCGCACAACCTTTTTTTCCTTTT TGTCTCCGTCAGATAATTTCCTCGGACCCAGGCACATCTCAATGGGGATA AGACGCATGCGTGTTGAACAGCGGGTGCGCACACGTGGTATCGGACATGA AGCTCCTACGTATTAATAATGAAAATACTGCCGTCGTGTGTGCCATGGCT TTTTTTTTTTTCCGGCAGGTGGTCGAGCTCCTTCTGGACGCAGGGGCCAA CCTCGAGCACCAGGACGACATCTCGGGCACTTCTCTGCACGGCGCCGCGC GGCGCAACCACTGCTCCACCGTCCGCCTCCTCCTCAACCGCGGTGCCTCC GTGGACGCCGCAGACGGCGTCGGAAACAGGCCGCTGCACTTGGCATCTGC CGAGGGAGCCATCTCCGCACTCGGGGTGCGTATACATCCAATACTCTTTT TTTGTTATTTCTTTGTTGTTGTTGATCGCTCTCTTACGTTTATGACCAAA ACCGATGTTATACATGGCTTTTTATCCCTCTCTTTATATTTTTTTGGTTC GTTTGAGTGTGTTGATCCCTTTCTTAGTAGAAATTTACACGCAATCACAG AAAAACTGGACGACCCGTTCGAGATCTAAACCCGTTCTATTTGTTTGACG ATATGAATGTATTTTGTTTTGACCAGTCCCTTTCGTTTTAGGTCAAGAGT TTGCGCGAGAGAAGCGATCCTTACATGGAATGAAACGGTTGAAGTTAAAT GTCGAATGGTGTGTCTGGGTGGATTGAGTGTCCTCTATTGTGGGCATCTA CTTCGCCTTGTTTCAGAATCTTGCCGATGTCATGCCGGATAGTTTGCCTG GGTGGGACACACTTCACCCGGCTATCGATGATCGACAAAAAGGGTGTGCT ATTATAGTCAGCCAGCTGAGAAAATGCCCCCATTTGAACAGTCATGCGGC TAAGAAAATGCCCCAATTTTACTTGGTTGTACCCAACTGCTCTACTGCCC TCCTCTGCTTTGCCCCCACCCCAACGTTTCGGATCGCCAGGTTCTTGTGA ATCACTACGCCGACCCACAGGTGAAGAACATCAGAGGCCAGACGCCGCTG GACGTTGCCCAGGCTTCTTGGATCGGGAACTTCTGCAAGAAGAAGATCGC TCGCCTCCTCTCCACGGAGAGCACCTGAGGGCGTCAGCCGGGCGGGTTTC GGACAGCCAAGGGGGACTACCTGCTGCTGTCGTCTCTTGAAAAATGGAGA GCGCCTGAGGCGGGGCTTCGGACAGCCAAAGAAGACTGCTGCTGTCATCT GTTACATGTACGTGAGGCAGGCGGGCTTCGGACAGCAATGAAGAGAGAAG GACTACCTACCGCTGTCATCTGTTACGACGTCGGTGTCGTCCGTGTAAAC GCGCTGCGCTGGGAATGCCAAGTGCCTCTGAGCACGAGACGGCAGAGGTT CTTGTACTCCTTAGTTTCGTCTTCCGTCTTCTTTTTTTTACATGCGCTTG CCGAACTCTCTTTGGGAATAAGAAAAGAATAACCTTTTGTGTTCCTGGTC TGTTCGCCTTTAGACTCGTCCTTGAGAACGCTAGATAACAGCTGATTTTT GTCGTTTTCGTTTTTGCAGGAAAAAAGGCTCGGCGGGAGCTGAGCGGGTT GGTTGTGCCCCGGGCCGATTGCTGACTGACGCAACCTTGAAAATTGGCGT ACTGTTGTCTTTTGTTTTTTTCTATCGTACGAAATAATGAGTCATGTATC TATCTAAATATCTCTGCATCCGCGACACGCGATTTTAGCCTTGATGTCAC GAGCAGACGGCCTGACTTCTGTTCGACAAGATCGAATCGGAAAGGAAGGT GTTCGGGTTTTTCTGTCGAGTTCATTTTATTTATGTTTTGTTCGTGCGCC GCCCATCGGGCCAACCTTGTATCGAGTGGACCGTGTGCCTCATGCCACGT GTGTGTCATCTAAAGAAATTTGCAATATACGGGCGTGTGTTTATCGGAAA AGAGAAAAAATATCGTCTCCAAGTGTACATATCGCCACCGGGCGCAACTG CTTCGTTCTTGTTTTTTTTTCAGCGGAACAGAAACGAACGGGAGGCATCT TGTTCAACCCACTCGTTGAACGTGCGGCCGCCCTTGAGCAAATGCCAAAG GGGGGTTAAAGTTGAGGGCAAAATCAGGCATGTACGGTAGTAGCAAGGAG ACTGCCACCGTTCTCTTATTTTCTTGTTTCAGCCTCTACCTCCACGCTCG GATTTTCCACGGAATCTTTTTTTGTGCTTGGAGGAGGAGTTTTTTTCCTT CCTACAAGACGTGCGTGCGAAGCGAACGCACAGGAAAAATGGGGCCTGGG GGGGCGTACTCTTGTGTTTTGCATCCCTTAGCGGTTAAACCATTGACCAC GCGTCCTAAAGGGGCTGGGGGGGAAAAACCGAGCGGAAAAATGTATGCAT GCGTATTTTTCGATTCATGTATTTTTGTACTTATGTATTCGCTTGAACCA AGAGCGGGCGAGTAAGAACGTGTAGATCGCTGTCTTCGCCGTTTTCCTTA CAGCAAGGGGCAGGACGGCTGGGCTGTAGCGCGATCGAGGAGGTTCTAGT CTTTGTGCGCGTCTTTTATTGGTCAGGCTCTAGATTCCTTACAGTACAGT TTTTTTTTTTTACTTTCTTTCGAGAGACGCCAGGCATGGTGTTCTCCTGT CTGGAGCTGTACACACAAAAAAAGTCATTGCTTTCTGCTGTTCATCCATC CATGGTACATATGGAGTTGCCCCGTAGCGCTGCTCCGTAAGTTGTTGTTT TTTTCCAACTTTTTTTGTGCAGCTCGTTGGGACTCTGGGTGCGTGCCACC CCACCCCCCTATCGATTTTTTGCCAAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:412079..418455+

>mRNA_Ecto-sp6_S_contig99.18857.1 ID=mRNA_Ecto-sp6_S_contig99.18857.1|Name=mRNA_Ecto-sp6_S_contig99.18857.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:412079..418455+ (Ectocarpus species6 EcLAC_371)
ATGCTCGTGCACCAAGCGCAGCAGTCTCAGGTCGTGGCGGCAGGCCCCGC
TTCGCGCAAGTCCCTCGGCGGCGGATGCCGACCGCCGCCCTCGTTGCAGC
GAGAACCAGCAGTTGCCCTTGACTTGGACAACATGTTCGGCGAGGAGCCA
CCCTCACCCTCTCCACGAGACGAGCTACCCGCGGAGGCGATGAAGACGGG
CCAGTGGTGCGAGAGGAACTCTGTGGCTCTCCTGGAGGCGTGCTGCAACC
GCGACGTCGGAAAAGCCGCTCGTATACTGGGACAAGCCTCGGCGGAGCAC
GTGGGCGAGGAGAGGATGAAAAATATGGTGATGCTGAAAGACGACTTCCG
AGATACCGCGCTCCACCTCAGCGCCTGCCAGGGCGAGGTGGGCATCGTGA
AGCTGCTGCTGGCGAGAGGGGCGGACGTCCACGCGCAGAACAACCTCGGG
AGCACCCCGCTGAACCGCGCGGCGGTAGCTGGAAGGACCGAGGTGGTCGA
GCTCCTTCTGGACGCAGGGGCCAACCTCGAGCACCAGGACGACATCTCGG
GCACTTCTCTGCACGGCGCCGCGCGGCGCAACCACTGCTCCACCGTCCGC
CTCCTCCTCAACCGCGGTGCCTCCGTGGACGCCGCAGACGGCGTCGGAAA
CAGGCCGCTGCACTTGGCATCTGCCGAGGGAGCCATCTCCGCACTCGGGG
TTCTTGTGAATCACTACGCCGACCCACAGGTGAAGAACATCAGAGGCCAG
ACGCCGCTGGACGTTGCCCAGGCTTCTTGGATCGGGAACTTCTGCAAGAA
GAAGATCGCTCGCCTCCTCTCCACGGAGAGCACCTGA
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