mRNA_Ecto-sp6_S_contig99.18835.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18835.1
Unique NamemRNA_Ecto-sp6_S_contig99.18835.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18835.1 vs. uniprot
Match: A0A6H5KDC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.530e-18
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:  103 QVHFDEEHGVWHLVPSPVAVVVATASDKKIDSTSAGGSTRLASQQTEENLETS 261
            +VHFDEEHGVWHLVP P+AVVVATASDKKIDST AGG+TRLASQQTE+ LETS
Sbjct:   60 KVHFDEEHGVWHLVPPPIAVVVATASDKKIDSTPAGGATRLASQQTED-LETS 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDC2_9PHAE4.530e-1886.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:233966..236608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size265
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350608.4653237-CDS-Ecto-sp6_S_contig99:233967..2341861682350608.4653237-CDS-Ecto-sp6_S_contig99:233967..234186Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 233968..234186 -
1682350608.4762847-CDS-Ecto-sp6_S_contig99:236566..2366081682350608.4762847-CDS-Ecto-sp6_S_contig99:236566..236608Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 236567..236608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18835.1prot_Ecto-sp6_S_contig99.18835.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 233968..236608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18835.1

>prot_Ecto-sp6_S_contig99.18835.1 ID=prot_Ecto-sp6_S_contig99.18835.1|Name=mRNA_Ecto-sp6_S_contig99.18835.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=87bp
REEAVIPSACRHTPADVTLVDKCCVLTTASTRQLQVHFDEEHGVWHLVPS
PVAVVVATASDKKIDSTSAGGSTRLASQQTEENLETS
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mRNA from alignment at Ecto-sp6_S_contig99:233966..236608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18835.1 ID=mRNA_Ecto-sp6_S_contig99.18835.1|Name=mRNA_Ecto-sp6_S_contig99.18835.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2643bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:233966..236608- (Ectocarpus species6 EcLAC_371)
CGAGAAGAGGCCGTGATCCCAAGCGCATGTAGGCATACTCCGGTGAGGTG
CGCGAGAGTGTTCTTCTTCTGCGACCTATACTGCTGCTGTAGTTTTTCTT
TGAATTCCAGCGAGCGAGGCAGGAAAATAAATTACTGGGCGGAAGCAGCG
CTGTGCGCATCTGTGCATATTTAGTGTAGCTTCCTCTCCATATCGGCTTC
TTACAAGTAGAGATGTACAACACCTGTTTTCACGGCTCTACAGTAGGTCC
TTCCCTCGTTGTTGAATTCAACAAGGCGGCGGTCCCTGCTGGCATGTATG
TGACGTGAGCTTGTCGACTCTGGCTCTACTACATACAGCAAGCAGCAGTT
CTCTCACCACCAAGTGCCGCCCCCCCTGAAAGACACACCTAAAGAAAAGT
ACATGATGTACAAATTAACTAGTATGTTCACTCAAGGCGAGGGTTTGATG
CATGTGCCTACAAAGGATCTGGCGGCTTTTTCGCCGCCCCGCTCAATAGA
TCGGATCCAAGAAAATGCATAAGTGTTTCTTTTCTCGCGGGTATATTATT
CACATTAGGATTTGAAATTGGAATGATTGCTTGTTTGTGAAAGCCGAGAG
AAACCATGGGGTAAAAAACCGCGAGAGAAAAACACATTATTAAAGGGGCG
CAGAGGAGAGGGGCGAGAGAAGTAAAATCCATTTTCCCCGGCGTCTGAAC
CCGTGCACAACAACGGGCCCATGGATGTCGTATATCGTGCAGTAGCTGAC
TGAGAGACTGGGGCGCAGAGGGGCGAGAGAAGAAGTAAAATCCATTGTGC
CCGGCGTCTGAACCCGTGCACACAACAACGGGTCCATGGATGTCGTGCAT
CGTGCAGTAGCTGACTGAGAGACTGAGAGGGCGGGGCCAAAAAAGAATGG
TCCGGCAGCAATTGCGGAGAGTTACACAAAGAAAGGAATCCGTGCGCAAC
GGGTCCATCCATGGGCGAATTGCTTACTACAGTACACCGGCCGTGCAATA
TGAGCGGACTGAAAAAAAGAAGTCCGACATTTTGAATGTAAATATACTGC
CCGGACAAATCCCGAACACGTATGGGCTGGACATATCCCGGACACACGGG
CTGAAAAGATGAGAAGATGTTCGACATACGAGGGCCGAGAGAGAGACTGG
GGTAAAACATGAATTGATTGATGGATGGGAGAGAGAGCACAGGATAGATG
CGAAAGGTTTCCGCGCCGTGGCGACACAGATAGATGTAATGAAGAGACTG
ATGGAGAGTGAGAAGACGTGAGAAAGGCATACATAACAAAGCGCTCTAAC
GATCCGGAGAGATGGAACTGCAGCATATCTTGGGCATAAGGAAAGAAAGG
ATGACAGGATGATCGACACGCATGTGAGAGCCGAGAGAGAAACTGAGATA
AAATGTGAATGGATGGACGGGAGAGAGAGCACAGGAAAGGGGCAAAAGAT
TCCCGCCAGCGGACGAGACAGATTATAGATACAGACGAGTGAGAGGACGT
GAACCAAGCGGAATATTCAGAGCGCTCTGTGAGAGGCCGAGGGAGCCAAA
AAGCGGCGCTCTGAGAGCCCCCCGTGAGAACTTTCTGTTCCTCGCTCGCG
AATTCCAGTGTGTAAACGAGCTAGCATAGGTCAATGATTTTACTTCATTT
AGTTTCTTCAACAACCTGAACCTCGGCTTCTCGTGTGGAATATTTCTTAC
TTCCATAAGTCGGCCGGCATTTTGTGATTCGTGTTGGGTAGGCAGTGGAA
TGTTGGCAAACATGCGGACGATAGGAAACCATTTGTCGCCAACACGCCCG
TCACTCGGAGTCCTGTACAATCCATCACCCCGTCTGGTAACACCGGAAAA
TATAACGTTGGCCTCCGCGCAGAAGGAACCCCATCACTCCCATCTCCTCT
CGGGGTCCTAATCCTTGGTCGGGTCGGCACGTTGTCCACGATTCTCCAGC
CACCGTATTTTGCATTGCGCATCAAAAAGAGCCAAATACTCGTGAGGTTT
CGTCTTCGGCCCTTCGCCGAACATCACAGCTACACAGTCCCAGTTTCATC
CAAGCAGTTTGCACTCGTGATTTTTCCGGTCGAGTTCGCCCTTCCGGCAA
CAGGGAAGGTATTTTGGGTGCGCTGCTAGCAAAACCATTTGCTCTGTACC
ATGAAGAAACCGAACGCAAGCTCTCAGCGTCGAAGTTGTCTGCATTCCAC
ATGTATGTGATGTCACGACGAGTGACCAATACGAATGAGATGTGGCCTGT
GGGCGTACGCTTCGTCACCTGTGCGTGCGCTCTCGTGTTTATCTCATCAC
CGAAAATAGAGGCTGCCTGTGTGTCTGTAGAACTTCACAACGACCGTGGT
GGTTGATTTCAAAGCGCGCGTGTGCCTCTTTTCTCCACTTGCCCCCCTCT
CCGCGGCGTGCCCAACCAAAAGGCGGACGTCACGCTGGTTGACAAATGCT
GTGTGCTCACGACGGCAAGCACCCGTCAACTCCAGGTTCACTTTGACGAA
GAACATGGAGTGTGGCATTTGGTTCCTTCCCCTGTCGCCGTTGTTGTCGC
GACTGCCAGCGACAAGAAGATAGACTCAACGTCAGCAGGTGGATCTACCC
GGCTAGCAAGCCAGCAAACGGAAGAAAACCTCGAGACTAGTTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:233966..236608-

>mRNA_Ecto-sp6_S_contig99.18835.1 ID=mRNA_Ecto-sp6_S_contig99.18835.1|Name=mRNA_Ecto-sp6_S_contig99.18835.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:233966..236608- (Ectocarpus species6 EcLAC_371)
CGAGAAGAGGCCGTGATCCCAAGCGCATGTAGGCATACTCCGGCGGACGT
CACGCTGGTTGACAAATGCTGTGTGCTCACGACGGCAAGCACCCGTCAAC
TCCAGGTTCACTTTGACGAAGAACATGGAGTGTGGCATTTGGTTCCTTCC
CCTGTCGCCGTTGTTGTCGCGACTGCCAGCGACAAGAAGATAGACTCAAC
GTCAGCAGGTGGATCTACCCGGCTAGCAAGCCAGCAAACGGAAGAAAACC
TCGAGACTAGT
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