mRNA_Ecto-sp6_S_contig99.18832.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18832.1
Unique NamemRNA_Ecto-sp6_S_contig99.18832.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18832.1 vs. uniprot
Match: D7G9I7_ECTSI (Calmodulin-domain protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I7_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 9.170e-40
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:  145 HGKDAKEVGGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRLQVCVCF 351
            HGKDAKEVGGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRLQVC CF
Sbjct:   27 HGKDAKEVGGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRLQVCACF 95
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BLAST of mRNA_Ecto-sp6_S_contig99.18832.1 vs. uniprot
Match: A0A835ZF12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF12_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.490e-17
Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:   10 GKNLSKSFVRGRRERYEEHLHAANLRENLTHEEFSVPVDSIYDFSHGK---------------DAKEVGGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRLQ 336
            G + +++ + G +E  E       L +NL HEE    +  +Y+ + GK               + K  GGFG+VQ+V+ + TG  +A+KTV+L  V+ +K+FDF MKEVD++K LDHPNIVRLQ
Sbjct:  398 GDSATRAALFGSQEDKESLRRNQTLLQNLVHEEHRRAIQEVYELAGGKQLGSPVQHDMQSFQVEDKCEGGFGKVQIVTRKATGKDFALKTVELDRVRDKKSFDFFMKEVDIMKNLDHPNIVRLQ 521
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BLAST of mRNA_Ecto-sp6_S_contig99.18832.1 vs. uniprot
Match: A0A6H5KC85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC85_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.130e-11
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  226 MKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRLQVCVCFSTAQPTQSDMVPSG 393
            MKTVKLSSVKSEKAFDFIM EVDLLKTLDHPNIVRLQ      +      D++  G
Sbjct:    1 MKTVKLSSVKSEKAFDFIMNEVDLLKTLDHPNIVRLQEVYMSDSHLFMAMDLITGG 56
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BLAST of mRNA_Ecto-sp6_S_contig99.18832.1 vs. uniprot
Match: A0A835YW28_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW28_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.150e-10
Identity = 31/83 (37.35%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   88 ENLTHEEFSVPVDSIYDFSHGKDAKEVGGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRLQ 336
            +NLTH+ F+  ++++Y+F  G++  E G F  V++  HR+ G RYA+K  K++   S      + +EV++++ LDHP I+RLQ
Sbjct:   43 QNLTHDFFNRDINTVYEFVDGQELGE-GAFAVVRLAKHRRNGGRYAVKVFKVNGRLSPAEQGLLRQEVEIMRQLDHPGIIRLQ 124
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BLAST of mRNA_Ecto-sp6_S_contig99.18832.1 vs. uniprot
Match: A0A1Z5KRK0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRK0_FISSO)

HSP 1 Score: 65.9 bits (159), Expect = 8.950e-10
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:   58 EEHLHAANLRENLTHEE--FSVPVDSIYDFSHGKDAKEVGGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRLQ 336
            E+     +LR+N+ H E  F  P++ +YD  H       G  G V++V+H+KTG +YA+K + L+ V++ +    + +E+ ++  LDHPNIVRL+
Sbjct:  143 EDRREVGDLRQNVVHIEVPFGKPIEEVYDGIHNGPVLGSGISGLVRLVTHKKTGLKYAVKVLDLALVETAEGLRQLREEIFIMCQLDHPNIVRLE 237
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BLAST of mRNA_Ecto-sp6_S_contig99.18832.1 vs. uniprot
Match: J9FSY5_9SPIT (Protein kinase domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9FSY5_9SPIT)

HSP 1 Score: 60.1 bits (144), Expect = 8.230e-8
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:  127 SIYDFSHGKDAKEVGGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRL 333
            +I D  H  +    GGFG V +  HRKTG +YA+K ++ S VK  + F     E+ +L+TLDHPNI++L
Sbjct:   19 NIKDVYHFVERLGAGGFGVVYLAEHRKTGEKYAVKAIQKSRVKDYETFQ---NEIKILRTLDHPNIIKL 84
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BLAST of mRNA_Ecto-sp6_S_contig99.18832.1 vs. uniprot
Match: Q4UIR7_THEAN (Calmodulin-like domain protein kinase, putative n=3 Tax=Theileria TaxID=5873 RepID=Q4UIR7_THEAN)

HSP 1 Score: 57.4 bits (137), Expect = 7.260e-7
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:  169 GGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRL 333
            G FGEV +  HR TG RYA+K +  SS+K +   + +++EV++LK+LDHPNI+++
Sbjct:   59 GSFGEVLLCIHRVTGIRYAIKVICKSSMKKKGDHEALLREVEVLKSLDHPNIMKI 113
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BLAST of mRNA_Ecto-sp6_S_contig99.18832.1 vs. uniprot
Match: A0A835YS30_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS30_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.620e-7
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:   61 EHLHAANLRENLTHEEFSVPVDSIYDFSHGKDAKEVGGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRLQ 336
            E LH   + + +  E F      +YDFS     K  GG+  V +V H+ TG  YAMK + ++   SE A   +  E++ +K L HPNIVRLQ
Sbjct:   32 ERLHGKFMAQ-MVREVFDTHPSEVYDFSGPVLGK--GGYASVMMVKHKTTGALYAMKQIDITDF-SELALHLLQNEIESMKHLVHPNIVRLQ 119
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BLAST of mRNA_Ecto-sp6_S_contig99.18832.1 vs. uniprot
Match: J9IVL5_9SPIT (Protein kinase domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IVL5_9SPIT)

HSP 1 Score: 57.0 bits (136), Expect = 9.850e-7
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:  169 GGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRL 333
            G FGEV++ +HRKTG + A+K +K S +K ++   F+  E+++LK +DHPNIVRL
Sbjct:   61 GAFGEVRLCTHRKTGAKRAVKIIKKSFLKGKEEVRFL-SEIEILKQMDHPNIVRL 114
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BLAST of mRNA_Ecto-sp6_S_contig99.18832.1 vs. uniprot
Match: A0A8C0W736_CASCN (Protein kinase domain-containing protein n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A8C0W736_CASCN)

HSP 1 Score: 53.5 bits (127), Expect = 1.090e-6
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:  169 GGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLLKTLDHPNIVRL 333
            GGFGEV++  HR TG + A+K V     K E++F  I  EV ++K+++HPNIVRL
Sbjct:   25 GGFGEVKLAQHRVTGAQVAIKIVS----KGEQSFTSISSEVAIMKSIEHPNIVRL 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9I7_ECTSI9.170e-4098.55Calmodulin-domain protein kinase n=1 Tax=Ectocarpu... [more]
A0A835ZF12_9STRA1.490e-1739.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KC85_9PHAE1.130e-1167.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YW28_9STRA6.150e-1037.35Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A1Z5KRK0_FISSO8.950e-1035.79Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
J9FSY5_9SPIT8.230e-843.48Protein kinase domain containing protein n=1 Tax=O... [more]
Q4UIR7_THEAN7.260e-747.27Calmodulin-like domain protein kinase, putative n=... [more]
A0A835YS30_9STRA7.620e-738.04Kinase-like domain-containing protein n=1 Tax=Trib... [more]
J9IVL5_9SPIT9.850e-749.09Protein kinase domain containing protein n=1 Tax=O... [more]
A0A8C0W736_CASCN1.090e-649.09Protein kinase domain-containing protein n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:224235..226063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score79.0
Seed ortholog evalue2e-12
Seed eggNOG ortholog2880.D7FK83
Model size426
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
Exons2
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-26_002050.1
EC2.7.11.1
Cds size426
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350610.0401127-CDS-Ecto-sp6_S_contig99:224234..2243771682350610.0401127-CDS-Ecto-sp6_S_contig99:224234..224377Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 224235..224377 +
1682350610.054093-CDS-Ecto-sp6_S_contig99:225780..2260631682350610.054093-CDS-Ecto-sp6_S_contig99:225780..226063Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 225781..226063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18832.1prot_Ecto-sp6_S_contig99.18832.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 224235..226063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18832.1

>prot_Ecto-sp6_S_contig99.18832.1 ID=prot_Ecto-sp6_S_contig99.18832.1|Name=mRNA_Ecto-sp6_S_contig99.18832.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=142bp
MKFGKNLSKSFVRGRRERYEEHLHAANLRENLTHEEFSVPVDSIYDFSHG
KDAKEVGGFGEVQVVSHRKTGTRYAMKTVKLSSVKSEKAFDFIMKEVDLL
KTLDHPNIVRLQVCVCFSTAQPTQSDMVPSGVCVFFLPHKH*
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mRNA from alignment at Ecto-sp6_S_contig99:224235..226063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18832.1 ID=mRNA_Ecto-sp6_S_contig99.18832.1|Name=mRNA_Ecto-sp6_S_contig99.18832.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1829bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:224235..226063+ (Ectocarpus species6 EcLAC_371)
ATGAAGTTCGGCAAGAACCTCAGCAAGTCATTCGTGCGCGGTCGCAGAGA
GCGGTACGAGGAGCACCTGCACGCGGCCAATCTTCGCGAGAACCTGACCC
ACGAAGAGTTTAGCGTGCCCGTCGACTCCATCTACGACTTCTCGTGGGTG
CTCCTTGATTATCCCAGTAGCAGCAGAGTGACAAGAACGGCATGCTAGGT
GTGTTGCGTTCTCTCTAAGGGGTTAAGGGGTCGGCACTGCTGGTGAGAAG
CGGCCTGAGCGGGTTGATCGGAACTACTTGCTGTTGCCGCTCAAGAGCCC
TCTCGTCGTGTTTCGTAGCTACTAGCAGACGGCATTTACTCCCGCAGGAG
TGCAGCAGGGTGGAGGGTGGACGGCACAGCCTCGGCATTGAGAGAGAGAG
AGAGAGCTGAGCATTCCATCCTATGTATGCATTTACAGCACGATACGCGT
GGACGGGTACGGAAACGCGGCGCAACCTCCGCTGTTGGATGATGTCGGAC
TCACTGAAAAGACTCCACCACATCCCGTTCGACTGTGGGTATATCTCGAA
TGGGTAGTCTTTCTGCGTGTGTTTTTATTATTCCTTAATGATGTCGGTGT
TTCTCTCTCTGGCCTGTCTGTCTACCGTCTGTCTGGCTGTCTGTCTCTCT
GTCTCTCTCTTTCTTGCTCGCTCTGTGGGGCTCCGGGTGTGTACGTGTGT
ATGGAGCGTTTTTGGCGACAAGCAACAAGCGCTGGAAGATCATCAGTTCT
TTGGCAGTAATATGCGAACATAAAAATGCAAAATGCATAGTCTACATGAA
GAGAAAACGAGGCCCCATCACCAACACCCAAAGGCCATTAGTGCGTACTA
AACCTGGATGCACCTCTCGAAAATCGAAAATACACGAGTGGACACAGAAT
TCCGCGTGCAATTTTGGGCCACGTGATTCCTGGTGCTGACGAAATACGTA
AACTCGAAGAAAAATACTCGCAACTCCGCGATGGATTGCGAACCGGTCGC
CCCGGAGGTTTAGTTGGTGAACTCGTGCGAAGGTGTACTTGTACCGAATA
CGGTAAAAGTCCATCGAGGGATACCTTGGGAATCGTGTCCTCGTCAAATC
GGAGATCTCAAGTTGAGAGAGAGGCAAAATAGCGTAGTACTACATACATA
GTACGCACGAACGGCGAGAGACGAGTAACAGTATAGAACGGGGGGGGTAC
CGTACGGGGGTACGCACGAACGGCGAGAGACGAGTAACAGTATAGAACGG
GGGGGGTACCGTACGGGGGTCCCGCAACCCCCGCAAACTTGAAATACTTG
GCTAATTAAGACACAGCTCAGCCGAGGATCCTGCGCTACACTCAATATCT
ACCTAACCCTTACACTGACGTTGGGGACGAAATGAGAAATTAAGCCTCGA
CCCAATTTTGACGCTTCAGATATATATGCGGGCCTGCACTGCTGTACTAT
GTACCCCAAAACCTTAGCTCCAGTCGTATGCGTCTACCAAAAAATGGCTT
TCCAATCCCCACATGTCCACACCTGTGACCTGCTGTCCTCTCGCAGGCAC
GGAAAAGATGCGAAGGAAGTCGGAGGGTTTGGAGAGGTGCAAGTGGTGAG
CCACCGCAAGACGGGAACGAGATACGCCATGAAGACCGTCAAGCTGTCGA
GCGTCAAGAGCGAGAAAGCCTTCGACTTCATCATGAAGGAAGTGGATCTT
CTCAAGACCCTGGACCACCCCAACATCGTGCGCCTTCAGGTGTGTGTGTG
TTTTTCTACCGCACAACCAACTCAATCCGATATGGTGCCTTCAGGTGTGT
GCGTGTTTTTTCTACCGCACAAGCATTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:224235..226063+

>mRNA_Ecto-sp6_S_contig99.18832.1 ID=mRNA_Ecto-sp6_S_contig99.18832.1|Name=mRNA_Ecto-sp6_S_contig99.18832.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:224235..226063+ (Ectocarpus species6 EcLAC_371)
ATGAAGTTCGGCAAGAACCTCAGCAAGTCATTCGTGCGCGGTCGCAGAGA
GCGGTACGAGGAGCACCTGCACGCGGCCAATCTTCGCGAGAACCTGACCC
ACGAAGAGTTTAGCGTGCCCGTCGACTCCATCTACGACTTCTCGCACGGA
AAAGATGCGAAGGAAGTCGGAGGGTTTGGAGAGGTGCAAGTGGTGAGCCA
CCGCAAGACGGGAACGAGATACGCCATGAAGACCGTCAAGCTGTCGAGCG
TCAAGAGCGAGAAAGCCTTCGACTTCATCATGAAGGAAGTGGATCTTCTC
AAGACCCTGGACCACCCCAACATCGTGCGCCTTCAGGTGTGTGTGTGTTT
TTCTACCGCACAACCAACTCAATCCGATATGGTGCCTTCAGGTGTGTGCG
TGTTTTTTCTACCGCACAAGCATTGA
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