mRNA_Ecto-sp6_S_contig99.18816.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18816.1
Unique NamemRNA_Ecto-sp6_S_contig99.18816.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18816.1 vs. uniprot
Match: UPI0000161E56 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E56)

HSP 1 Score: 125 bits (314), Expect = 7.830e-29
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 3 
Query:  510 GGTAVNINASVRKKYWVFLKDGVLTPLSPDFKGGVGSEYLWTEDALLPSPAGDWKFGIKRQNDPRRRHVDPLTNALWVPEQE 755
            GG  +NI  ++R KYWVF+KDG L  LS DF+ GVGSEYLWTEDA L +P+ DWK  IKR+NDPRR HVDPLT  LWVPE E
Sbjct:  172 GGPVLNITNTLRTKYWVFIKDGKLVTLSSDFRDGVGSEYLWTEDAFLCAPSRDWKNPIKRENDPRRHHVDPLTEVLWVPECE 253
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BLAST of mRNA_Ecto-sp6_S_contig99.18816.1 vs. uniprot
Match: A0A6H5JX91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX91_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 4.530e-28
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 3 
Query:  510 GGTAVNINASVRKKYWVFLKDGVLTPLSPDFKGGVGSEYLWTEDALLPSPAGDWKFGIKRQNDPRRRHVDPLTNALWVPEQE 755
            GG  + I  ++R+KYWVF+KDG LT +S DFKGGVG EYLWTEDA L  P+ DWK  ++RQ DPRR +VDP TNALW+PE++
Sbjct:  170 GGPKLEIPPTLRRKYWVFIKDGELTTISKDFKGGVGYEYLWTEDAALSLPSTDWKLPVRRQTDPRRAYVDPRTNALWLPEED 251
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BLAST of mRNA_Ecto-sp6_S_contig99.18816.1 vs. uniprot
Match: D8LPI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI0_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.320e-27
Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 3 
Query:  510 GGTAVNINASVRKKYWVFLKDGVLTPLSPDFKGGVGSEYLWTEDALLPSPAGDWKFGIKRQNDPRRRHVDPLTNALWVP 746
            GG  +NIN +V+KKYWVF+KDG L  LS DF+ GVG+EYLWT+DA L +P+ DWK+  K QNDPRR HVDP T  LWVP
Sbjct:  166 GGPVLNINHTVKKKYWVFIKDGKLVTLSSDFRDGVGAEYLWTDDAFLGAPSSDWKYPFKFQNDPRRLHVDPATGVLWVP 244
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BLAST of mRNA_Ecto-sp6_S_contig99.18816.1 vs. uniprot
Match: A0A6H5KWG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG7_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 9.890e-25
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 3 
Query:  510 GGTAVNINASVRKKYWVFLKDGVLTPLSPDFKGGVGSEYLWTEDALLPSPAGDWKFGIKRQNDPRRRHVDPLTNALWVPEQ 752
            GG   N+ +++R  YWVFL+DG LT +S  FKGGVG+EYLWTEDA L  P+ DW    +RQ DPRR H+DP T ALWVP++
Sbjct:  196 GGPERNMKSTIRTTYWVFLRDGKLTTISEQFKGGVGTEYLWTEDAALRRPSADWMNDTRRQMDPRRAHIDPRTMALWVPKK 276
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BLAST of mRNA_Ecto-sp6_S_contig99.18816.1 vs. uniprot
Match: A0A6H5JHU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHU3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.130e-24
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 3 
Query:  510 GGTAVNINASVRKKYWVFLKDGVLTPLSPDFKGGVGSEYLWTEDALLPSPAGDWKFGIKRQNDPRRRHVDPLTNALWVPEQEV 758
            GG  +++ +++R KY VFL+DG LT +S  FKGGVG+EYLWTEDA LP P+ DW  G +R+ DPRR   +P T ALWVPE+EV
Sbjct:  263 GGPELSMTSTIRTKYRVFLRDGKLTTISAQFKGGVGTEYLWTEDAALPRPSADWMNGTRRRMDPRRADAEPRTMALWVPEEEV 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI0000161E567.830e-2967.07hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JX91_9PHAE4.530e-2862.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPI0_ECTSI1.320e-2764.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWG7_9PHAE9.890e-2558.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHU3_9PHAE2.130e-2457.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:74675..75975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size875
Hectar predicted targeting categoryother localisation
Exons2
Cds size873
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350609.0358834-CDS-Ecto-sp6_S_contig99:74674..748151682350609.0358834-CDS-Ecto-sp6_S_contig99:74674..74815Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 74675..74815 +
1682350609.0465994-CDS-Ecto-sp6_S_contig99:75241..759731682350609.0465994-CDS-Ecto-sp6_S_contig99:75241..75973Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 75242..75973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18816.1prot_Ecto-sp6_S_contig99.18816.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 74675..75973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18816.1

>prot_Ecto-sp6_S_contig99.18816.1 ID=prot_Ecto-sp6_S_contig99.18816.1|Name=mRNA_Ecto-sp6_S_contig99.18816.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=291bp
KLSAIEKNQDGDLQNIRRNQRNTERNYKDITVAFDRIKKLESTVYTLAAP
AATPKARAAPAATPKPKDAHKAKTTHKDNASPSQQVTNALSDVEKKSAQL
EVDRRALIEFNRINKALPEDKRYVWERVLESKEGDIRTMKFDRIADIRSL
ECLLSKRLLKTVVDNILVAEGGPRSTSTPVSGRSTGCSSRTVFSPRSAPT
SRVASGPSTCGRKTPCSHLRPATGSSASSARTIRAGATSTLSPTLCGCRN
KRWRRKRKRRRVAAAAAAAAVTAAAVTMTAAAATTMKVATT
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mRNA from alignment at Ecto-sp6_S_contig99:74675..75975+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18816.1 ID=mRNA_Ecto-sp6_S_contig99.18816.1|Name=mRNA_Ecto-sp6_S_contig99.18816.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1301bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:74675..75975+ (Ectocarpus species6 EcLAC_371)
AAACTTTCTGCAATCGAGAAAAACCAGGACGGTGACCTCCAGAACATCAG
GCGAAACCAGCGAAATACCGAGAGAAATTACAAGGACATCACCGTCGCGT
TTGACCGAATCAAGAAGCTGGAGAGTACCGTATACACCCTTGTCACGAGA
CTGAACTCTCAAAAACAACCTTCGTCAGTTTCACGCGTCGCAGCACCGGC
TTCATCCGCAGCACCGGCCTCGGTCACAGCCTCGACCCCGGCCTCAGCCG
ACGGCTCCGACGGCTCCAACGGCTCCGACGGCTCCGACGTCTCCGAATCC
GATTCCGGTTCCGATTCCGACTCCAACTCCAACTGCAAAGCCACACCGAA
GGCAAGCGCCAAGCCCAAGCACAAGCCTTCCCCCAAGCCTTCCCCCAAGC
CTTCCCCAAAGGCTTCCCCCAAGGCCACCCGCAAGGCATCGCCCGCGGCC
AAGGCAGCACCCAAGCCCAAGGCATCGCCCGCGGCCAAGGCAGCACCCAA
GCCCAAGGCAGCACCCGCAGCCACACCCACGGCCAGGTCAGCACCCGCGG
CCACACCCAAGCCCAAGGCAGCACCCGCAGCCACACCCAAGGCCAGGGCA
GCACCCGCGGCCACACCTAAGCCGAAGGACGCACACAAGGCCAAGACAAC
ACACAAGGACAACGCGTCGCCATCACAACAAGTCACCAACGCCCTTTCCG
ACGTGGAGAAGAAGTCGGCGCAGCTAGAGGTGGACAGGAGGGCACTCATC
GAGTTCAACAGGATCAACAAGGCGCTCCCCGAAGACAAGCGGTACGTGTG
GGAGAGGGTTCTGGAGAGCAAGGAAGGTGACATCCGGACGATGAAGTTCG
ACAGGATCGCCGACATCAGGAGCCTGGAGTGCTTGCTTTCGAAGCGCCTC
CTCAAGACCGTCGTTGACAATATCCTGGTCGCGGAGGGGGGACCGCGGTC
AACATCAACGCCAGTGTCAGGAAGAAGTACTGGGTGTTCCTCAAGGACGG
TGTTCTCACCCCGCTCAGCCCCGACTTCAAGGGTGGCGTCGGGTCCGAGT
ACCTGTGGACGGAAGACGCCTTGCTCCCATCTCCGGCCGGCGACTGGAAG
TTCGGCATCAAGCGCCAGAACGATCCGCGCAGGCGCCACGTCGACCCTCT
CACCAACGCTTTGTGGGTGCCGGAACAAGAGGTGGAGGAGGAAGAGGAAG
AGGAGGAGGGTGGCAGCAGCAGCAGCAGCAGCAGCAGTGACGGCAGCAGC
AGTGACGATGACAGCAGCGGCAGCGACGACGATGAAGGTGGCAACAACAA
C
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:74675..75975+

>mRNA_Ecto-sp6_S_contig99.18816.1 ID=mRNA_Ecto-sp6_S_contig99.18816.1|Name=mRNA_Ecto-sp6_S_contig99.18816.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=873bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:74675..75975+ (Ectocarpus species6 EcLAC_371)
AAACTTTCTGCAATCGAGAAAAACCAGGACGGTGACCTCCAGAACATCAG
GCGAAACCAGCGAAATACCGAGAGAAATTACAAGGACATCACCGTCGCGT
TTGACCGAATCAAGAAGCTGGAGAGTACCGTATACACCCTTGCAGCACCC
GCAGCCACACCCAAGGCCAGGGCAGCACCCGCGGCCACACCTAAGCCGAA
GGACGCACACAAGGCCAAGACAACACACAAGGACAACGCGTCGCCATCAC
AACAAGTCACCAACGCCCTTTCCGACGTGGAGAAGAAGTCGGCGCAGCTA
GAGGTGGACAGGAGGGCACTCATCGAGTTCAACAGGATCAACAAGGCGCT
CCCCGAAGACAAGCGGTACGTGTGGGAGAGGGTTCTGGAGAGCAAGGAAG
GTGACATCCGGACGATGAAGTTCGACAGGATCGCCGACATCAGGAGCCTG
GAGTGCTTGCTTTCGAAGCGCCTCCTCAAGACCGTCGTTGACAATATCCT
GGTCGCGGAGGGGGGACCGCGGTCAACATCAACGCCAGTGTCAGGAAGAA
GTACTGGGTGTTCCTCAAGGACGGTGTTCTCACCCCGCTCAGCCCCGACT
TCAAGGGTGGCGTCGGGTCCGAGTACCTGTGGACGGAAGACGCCTTGCTC
CCATCTCCGGCCGGCGACTGGAAGTTCGGCATCAAGCGCCAGAACGATCC
GCGCAGGCGCCACGTCGACCCTCTCACCAACGCTTTGTGGGTGCCGGAAC
AAGAGGTGGAGGAGGAAGAGGAAGAGGAGGAGGGTGGCAGCAGCAGCAGC
AGCAGCAGCAGTGACGGCAGCAGCAGTGACGATGACAGCAGCGGCAGCGA
CGACGATGAAGGTGGCAACAACA
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