mRNA_Ecto-sp6_S_contig98.18793.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18793.1
Unique NamemRNA_Ecto-sp6_S_contig98.18793.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:517079..517838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size761
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350600.8188367-CDS-Ecto-sp6_S_contig98:517078..5175131682350600.8188367-CDS-Ecto-sp6_S_contig98:517078..517513Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 517079..517513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350600.8279476-UTR-Ecto-sp6_S_contig98:517513..5178381682350600.8279476-UTR-Ecto-sp6_S_contig98:517513..517838Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig98 517514..517838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18793.1prot_Ecto-sp6_S_contig98.18793.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 517079..517513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18793.1

>prot_Ecto-sp6_S_contig98.18793.1 ID=prot_Ecto-sp6_S_contig98.18793.1|Name=mRNA_Ecto-sp6_S_contig98.18793.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=145bp
GYRSRARGAQSLLPLPHSVDSALEGQRCCFYCCPAPAASSVIEVASHHAC
GGFEAVCRIHWSQLGAAISSLARVVVWPLVHRSTRSWRKNSHPVDFVGTC
VVLTTALEMARIWRGQGWHTFASTSPGSASVVGSYVVGMFSSLC*
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mRNA from alignment at Ecto-sp6_S_contig98:517079..517838+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18793.1 ID=mRNA_Ecto-sp6_S_contig98.18793.1|Name=mRNA_Ecto-sp6_S_contig98.18793.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=760bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:517079..517838+ (Ectocarpus species6 EcLAC_371)
GGTTACCGAAGCCGTGCGAGGGGCGCGCAGTCTTTATTGCCTCTTCCTCA
TTCCGTCGATTCTGCTTTGGAAGGCCAACGTTGTTGTTTCTATTGTTGCC
CTGCACCGGCAGCTTCTTCCGTCATTGAAGTGGCTTCCCATCATGCCTGT
GGGGGGTTCGAGGCTGTGTGCCGTATTCATTGGTCGCAGTTGGGAGCGGC
CATTTCTTCCCTGGCGAGGGTCGTTGTGTGGCCTCTGGTGCATCGGAGCA
CTAGAAGCTGGAGAAAAAATTCACACCCTGTGGATTTCGTCGGTACTTGT
GTTGTGTTGACTACTGCGCTTGAAATGGCGAGAATCTGGCGGGGGCAGGG
TTGGCACACGTTTGCAAGCACATCGCCAGGCTCTGCTAGCGTTGTAGGTA
GTTACGTTGTAGGAATGTTTTCCTCTCTGTGTTGATCTCTCCCAGGCAGC
GTGCGGCCTTGAAAGGTGTCCCACCCTTGTGCGCGGGAACGGCGTTCGTT
TGCGCGCTGTCGCAAATCCCGTGAGTTTTTTTTAACCCCTTCGATTCCTT
TCGGGGTACGCTGCCGTTCGTCCGTGCTGGCTTAGCATTGGATGCCCGAG
AGGCGCGTTATTTTCAACGTCAAGTGTCGGGATTCGGGATAGGTCCAAGT
CTTTTTGGTAGGCAGAGAGTCTGCCACGTTGTTATTCTTTGTGAGGGTTC
CGCCTAGTTCAGCATGGACGGTAATGGAGCCGACGAAGTGACGTGTACGC
GTGTTCGAAT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:517079..517838+

>mRNA_Ecto-sp6_S_contig98.18793.1 ID=mRNA_Ecto-sp6_S_contig98.18793.1|Name=mRNA_Ecto-sp6_S_contig98.18793.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:517079..517838+ (Ectocarpus species6 EcLAC_371)
GGTTACCGAAGCCGTGCGAGGGGCGCGCAGTCTTTATTGCCTCTTCCTCA
TTCCGTCGATTCTGCTTTGGAAGGCCAACGTTGTTGTTTCTATTGTTGCC
CTGCACCGGCAGCTTCTTCCGTCATTGAAGTGGCTTCCCATCATGCCTGT
GGGGGGTTCGAGGCTGTGTGCCGTATTCATTGGTCGCAGTTGGGAGCGGC
CATTTCTTCCCTGGCGAGGGTCGTTGTGTGGCCTCTGGTGCATCGGAGCA
CTAGAAGCTGGAGAAAAAATTCACACCCTGTGGATTTCGTCGGTACTTGT
GTTGTGTTGACTACTGCGCTTGAAATGGCGAGAATCTGGCGGGGGCAGGG
TTGGCACACGTTTGCAAGCACATCGCCAGGCTCTGCTAGCGTTGTAGGTA
GTTACGTTGTAGGAATGTTTTCCTCTCTGTGTTGA
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