mRNA_Ecto-sp6_S_contig98.18788.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18788.1
Unique NamemRNA_Ecto-sp6_S_contig98.18788.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18788.1 vs. uniprot
Match: A0A6H5JQS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS9_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 7.360e-38
Identity = 78/124 (62.90%), Postives = 81/124 (65.32%), Query Frame = 3 
Query:   24 VPLKKQTSVTAVVEVFGPAGREYSLDFDGFALEWTKAVSLMEESKSKVIPIFLETARLQGQRTENAPRAREHENHVTTCPGSRRPHQEAPSEAFLAVLLDLGFWTRRRDFSWRSSCPPLHHSFV 395
            +P+   T    VVEVF P GREYSLDFD FALEW+KAV    ESKSKVIPI LETAR QGQRTEN                      EAPSE FL VLLDLG W RRRDFS RSSCPPLHHSFV
Sbjct:    4 MPVSSATESVTVVEVFDPVGREYSLDFDSFALEWSKAV----ESKSKVIPILLETARHQGQRTEN----------------------EAPSEVFLVVLLDLGLWRRRRDFSCRSSCPPLHHSFV 101
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BLAST of mRNA_Ecto-sp6_S_contig98.18788.1 vs. uniprot
Match: D7FNE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE4_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.580e-21
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 3 
Query:   66 VFGPAGREYSLDFDGFALEWTKAVSLMEESKSKVIPIFLETARLQGQRTENAPRA 230
            VF PAGREYSLD D FALEW KAVS MEESKSKVIPIFLETAR QGQRTEN PRA
Sbjct:    3 VFRPAGREYSLDLDSFALEWRKAVSRMEESKSKVIPIFLETARRQGQRTENLPRA 57
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BLAST of mRNA_Ecto-sp6_S_contig98.18788.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.740e-8
Identity = 68/233 (29.18%), Postives = 94/233 (40.34%), Query Frame = 2 
Query:    2 VPHMPVSSAAEKANFGDCCG*GFRSSGEGVFARLRRLCIG-------MDQGRVAHGGEQEQSNSHLPGDGQTPGAAH*KRTTST*TREPRYNLS-----RVKTPPSGGAVGGLSGGLA*PWVLDASEGFQLAEQL--------------------------PSTPPFVRVVLGLTGHQREVEMLAPLRSTTHKSFGRKGNPKN--VPCQSLHHVTVKPSQRNAVRKSRGGCEC 580
            VPHMPV+SAAEKA FGD        +G           +        M++G+ A      ++  HL    +    AH ++     T  P           ++ P   G VGG +GGLA PW+L+A EGFQ+ EQL                          P   P   V  G   H+  + +        H  F     PK   VP + L  + V+P+Q+NA+RK  G CEC
Sbjct: 1010 VPHMPVTSAAEKAKFGDMWLEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSAVIPIFRKTAGHL----KAYWKAHHEQVNMRDTLRPARGRDAPIREHLRAP---GDVGGPAGGLAQPWILEAPEGFQMPEQLXXXXXXXXXXXXXXXXXXXXXXXXXKPRRKPQHCVECG---HKMRIGVFKKY----HPQFLSAAQPKKCTVP-EGLRRLAVRPTQQNALRKFGGECEC 1227
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18788.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.790e-7
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 3 
Query:   60 VEVFGPAGREYSLDFDGFALEWTKAVSLMEESKSKVIPIFLETA 191
            +E   PAGR+  LDFD FALEW KAVSLMEE KS VIPIF +TA
Sbjct:  456 LEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSAVIPIFRKTA 499
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JQS9_9PHAE7.360e-3862.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNE4_ECTSI3.580e-2187.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JET4_9PHAE5.740e-829.183'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JD89_9PHAE1.790e-770.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:496371..497485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size925
Hectar predicted targeting categoryother localisation
Exons2
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350606.2344306-UTR-Ecto-sp6_S_contig98:496370..4967711682350606.2344306-UTR-Ecto-sp6_S_contig98:496370..496771Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig98 496371..496771 -
1682350606.2732742-UTR-Ecto-sp6_S_contig98:497342..4974851682350606.2732742-UTR-Ecto-sp6_S_contig98:497342..497485Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig98 497343..497485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350606.2425103-CDS-Ecto-sp6_S_contig98:496771..4970771682350606.2425103-CDS-Ecto-sp6_S_contig98:496771..497077Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 496772..497077 -
1682350606.26279-CDS-Ecto-sp6_S_contig98:497267..4973421682350606.26279-CDS-Ecto-sp6_S_contig98:497267..497342Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 497268..497342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18788.1prot_Ecto-sp6_S_contig98.18788.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 496772..497342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18788.1

>prot_Ecto-sp6_S_contig98.18788.1 ID=prot_Ecto-sp6_S_contig98.18788.1|Name=mRNA_Ecto-sp6_S_contig98.18788.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=127bp
MEESKSKVIPIFLETARLQGQRTENAPRAREHENHVTTCPGSRRPHQEAP
SEAFLAVLLDLGFWTRRRDFSWRSSCPPLHHSFVWFWGSRAISEKWKCWH
PCEALPTRVLVGKGTQKMYRARACTM*
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mRNA from alignment at Ecto-sp6_S_contig98:496371..497485-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18788.1 ID=mRNA_Ecto-sp6_S_contig98.18788.1|Name=mRNA_Ecto-sp6_S_contig98.18788.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1115bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:496371..497485- (Ectocarpus species6 EcLAC_371)
GGTGCCGCACATGCCGGTGAGCAGTGCCGCTGAAAAAGCAAACTTCGGTG
ACTGCTGTGGTTGAGGTTTTCGGTCCAGCGGGGAGGGAGTATTCGCTAGA
CTTCGACGGCTTTGCATTGGAATGGACCAAGGCCGTGTCGCTCATGGAGG
AGAGCAAGAGCAAAGTAATTCCCATCTTCCTGGAGACGGCCAGACTCCAG
GGGCAGCGCACTGAAAACGTGAGTGCCACCCCCTTCTTGTCGAATACGTT
ATCATGTATTTTGCTTAGATCGTGAACGCTAGTATTTTCACCATGACCAG
CTTGCGAAGTGGGTGTCCCGAAGTAGTCCCTCCACTTCGAGGTATGTCTC
TTGCTTTTATGGTCATACGTGCCTTCCATGCCCACGCATGTACCGGTGAC
GTTGCCAGGCACCACGAGCACGTGAACACGAGAACCACGTTACAACCTGT
CCAGGGTCAAGACGCCCCCATCAGGAGGCGCCGTCGGAGGCCTTTCTGGC
GGTCTTGCTTGACCTTGGGTTCTGGACGCGTCGGAGGGATTTCAGTTGGC
GGAGCAGCTGCCCTCCACTCCACCATTCGTTCGTGTGGTTCTGGGGCTCA
CGGGCCATCAGCGAGAAGTGGAAATGTTGGCACCCCTGCGAAGCACTACC
CACAAGAGTTTTGGTCGGAAAGGGAACCCAAAAAATGTACCGTGCCAGAG
CTTGCACCATGTGACTGTGAAACCGTCGCAGCGGAATGCAGTAAGGAAAT
CTAGAGGGGGGTGCGAGTGTGAATCGGCGGAGTGGCAGAGCACAACAGTT
GCTATTTTTTGGACACCCTTTAACGGCGACGATCCGATAGACCGAACCGA
CAACCGACGGGTGGGGGGATTAGACAAAGGGGATCATGCGTATGAATACC
CGTTTCGAGGACACGGCTGCAGCTGGGGAGAGCAGGACGAGTATGACAGA
ACGTTTTGCGAAAATGTGTGGGGGGTTGGATGTGATGGAGGTGGCAGGAA
TACTTCAATTTTTTGTTGAACCCCCTTCGTACAGCTGCCGGATGTGATGT
CTTTCTTAATTACTGATGATCTTTGATTTCTTTTCGGCATCGCGTGCCGA
GCGGAAGAGATGAGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:496371..497485-

>mRNA_Ecto-sp6_S_contig98.18788.1 ID=mRNA_Ecto-sp6_S_contig98.18788.1|Name=mRNA_Ecto-sp6_S_contig98.18788.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:496371..497485- (Ectocarpus species6 EcLAC_371)
ATGGAGGAGAGCAAGAGCAAAGTAATTCCCATCTTCCTGGAGACGGCCAG
ACTCCAGGGGCAGCGCACTGAAAACGCACCACGAGCACGTGAACACGAGA
ACCACGTTACAACCTGTCCAGGGTCAAGACGCCCCCATCAGGAGGCGCCG
TCGGAGGCCTTTCTGGCGGTCTTGCTTGACCTTGGGTTCTGGACGCGTCG
GAGGGATTTCAGTTGGCGGAGCAGCTGCCCTCCACTCCACCATTCGTTCG
TGTGGTTCTGGGGCTCACGGGCCATCAGCGAGAAGTGGAAATGTTGGCAC
CCCTGCGAAGCACTACCCACAAGAGTTTTGGTCGGAAAGGGAACCCAAAA
AATGTACCGTGCCAGAGCTTGCACCATGTGA
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