mRNA_Ecto-sp6_S_contig98.18767.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18767.1
Unique NamemRNA_Ecto-sp6_S_contig98.18767.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18767.1 vs. uniprot
Match: D7G0V5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V5_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.020e-38
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:    1 MARLVDSLLRGRAQASARHEAATAVSDIRTFVHAWRPDAPASKDEQDSTEPEGRGRTRSNGSGGSDPSMNRPSADTLLKLAQ 246
            MARLVDSLLRGRAQASARHEAATAVSDIR FVHAWRPDAPASKDEQDSTEPEGRGRTRS+GSGGSDPSMNRPSADTLLKLAQ
Sbjct:    1 MARLVDSLLRGRAQASARHEAATAVSDIRAFVHAWRPDAPASKDEQDSTEPEGRGRTRSHGSGGSDPSMNRPSADTLLKLAQ 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0V5_ECTSI1.020e-3897.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:268670..270336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size499
Hectar predicted targeting categoryother localisation
Exons3
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350603.8809395-CDS-Ecto-sp6_S_contig98:268669..2689151682350603.8809395-CDS-Ecto-sp6_S_contig98:268669..268915Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 268670..268915 +
1682350603.9017038-CDS-Ecto-sp6_S_contig98:269780..2699591682350603.9017038-CDS-Ecto-sp6_S_contig98:269780..269959Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 269781..269959 +
1682350603.9138885-CDS-Ecto-sp6_S_contig98:270263..2703361682350603.9138885-CDS-Ecto-sp6_S_contig98:270263..270336Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 270264..270336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18767.1prot_Ecto-sp6_S_contig98.18767.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 268670..270336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18767.1

>prot_Ecto-sp6_S_contig98.18767.1 ID=prot_Ecto-sp6_S_contig98.18767.1|Name=mRNA_Ecto-sp6_S_contig98.18767.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=166bp
MARLVDSLLRGRAQASARHEAATAVSDIRTFVHAWRPDAPASKDEQDSTE
PEGRGRTRSNGSGGSDPSMNRPSADTLLKLAQRGVQLHNNARKLYHARNS
GGGGTSGGPGACSDWKSATEAYLRAAAASLVSLGSTSSSKDCGNLCRLFS
KAGELLVEDAGDDIRA
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mRNA from alignment at Ecto-sp6_S_contig98:268670..270336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18767.1 ID=mRNA_Ecto-sp6_S_contig98.18767.1|Name=mRNA_Ecto-sp6_S_contig98.18767.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1667bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:268670..270336+ (Ectocarpus species6 EcLAC_371)
ATGGCCAGGCTTGTGGACAGCTTGCTTCGAGGGAGAGCTCAGGCATCTGC
TCGTCACGAAGCCGCTACCGCGGTGTCGGACATACGTACCTTTGTCCACG
CTTGGAGACCCGATGCACCTGCGTCAAAAGATGAACAGGACAGCACTGAA
CCAGAAGGGCGAGGTCGAACTCGCAGCAATGGTAGCGGCGGGAGTGACCC
AAGTATGAACAGACCTTCGGCCGACACCCTCCTCAAGCTTGCACAGGTAT
AGCGGTGCCAGGCGTTCTGCTTGCGCTTGAATCCGGAGTCGGTTTTTCAC
TATAGTTTGCGCATCCGTCCACTTGTCTTGAGGACATGGTTGTAAACACG
AGCGCCGCTTTGAAGAGAAGAGAAAGTGTGGTTGACTCAGAGCGACGGTG
CCGAACATGCGTGGTGTTGGAACTATCTCGTCAGGTACTCGGTCCGGCAA
ATTCTCACGTCACTCACACACAAAAATTTCCTTGGGATTGCTGATACAAA
GCTGAAACAGCACTTCTTACTCCACATTATAGTTTTCACGCTGGCGGAGC
AGTCGACATGTTGTAGTCCAATGGTGCCGCCGCTGCGCATACGGGGGTCA
ATTCGCTCCAAAGACCTTACCTGCTTCAGTCTTGCCACCGCTGCTGCCGT
AGCCTCTGCCTTAACTCTGGCTTATCGGAAGGGCATGAGTATTCACACGG
ACGCCTCGAAGAAGAGATAAACTGGTCTGTAAGTGAACACGATAGGGCAC
CTCGGATGCTCGAGAGAGTGAAACGACAAAGAATGGCATCGGCTCTGGGA
CTTTCTCAATATTTCATACCACGGCATAAGAGACGCCGTACTTCGGTGTC
ACGACAGAATACACCAAACTACTCGGAGCCTCTCATCGAGCGGTGTGGGT
CAAGTGATATTTTGGTTGTAGGTCAGCATAGGATACGATGGCGATCTCTG
GAAAATAGTGCACCGGGTACCTGAAGGCGCGAGTGCGCTATTGTCATACA
CGTTCTTTCCGCTACACATTCATTGGGGTTCACTGAGCGACTAACCATGA
TACATACTCCCGAATGCGGTTGGACCCGCGCTGTGATGCCTGGATCATGT
ATCTCATTTAGAGAGGAGTGCAGCTTCACAACAACGCCCGGAAGCTTTAC
CATGCTCGAAACAGCGGCGGCGGGGGAACATCAGGGGGTCCTGGTGCTTG
CAGTGACTGGAAGAGCGCGACTGAAGCCTACCTACGCGCCGCCGCTGCTT
CGCTCGTGTCCCTTGGGTCGACGTCTTCCTCAAAAGATTGGTGGGCAAGC
GTCGAGCACGCACGCCATGTGCACCACAGCTCGCTGCCTTTAGCCATCGA
GTCGGCCTCAATTTGCAATTTTTCACTCTTTGTGGACAAGGCAATGGAAT
ACCTGCACATCATGAGTAGAAGTGGTCGGATGTCCGATAAGTGTTACTGT
AGGGGGAGGTTTGTAGGCCTTCACCTGAAGCTGCAAGAACCTCGTGCGAA
TGCATCCGGTGAAATTCGCATGGTTCCTTATGCATGTTCATTTCCTTGTG
TGAATCACTTGCCGATTTTGCCGTGCCGCACCCCGCGCCGACAGTGGAAA
CCTCTGCCGTCTTTTCTCGAAAGCCGGGGAGCTCTTGGTTGAAGATGCCG
GAGATGACATTCGGGCA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:268670..270336+

>mRNA_Ecto-sp6_S_contig98.18767.1 ID=mRNA_Ecto-sp6_S_contig98.18767.1|Name=mRNA_Ecto-sp6_S_contig98.18767.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:268670..270336+ (Ectocarpus species6 EcLAC_371)
ATGGCCAGGCTTGTGGACAGCTTGCTTCGAGGGAGAGCTCAGGCATCTGC
TCGTCACGAAGCCGCTACCGCGGTGTCGGACATACGTACCTTTGTCCACG
CTTGGAGACCCGATGCACCTGCGTCAAAAGATGAACAGGACAGCACTGAA
CCAGAAGGGCGAGGTCGAACTCGCAGCAATGGTAGCGGCGGGAGTGACCC
AAGTATGAACAGACCTTCGGCCGACACCCTCCTCAAGCTTGCACAGAGAG
GAGTGCAGCTTCACAACAACGCCCGGAAGCTTTACCATGCTCGAAACAGC
GGCGGCGGGGGAACATCAGGGGGTCCTGGTGCTTGCAGTGACTGGAAGAG
CGCGACTGAAGCCTACCTACGCGCCGCCGCTGCTTCGCTCGTGTCCCTTG
GGTCGACGTCTTCCTCAAAAGATTGTGGAAACCTCTGCCGTCTTTTCTCG
AAAGCCGGGGAGCTCTTGGTTGAAGATGCCGGAGATGACATTCGGGCA
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