mRNA_Ecto-sp6_S_contig98.18749.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18749.1
Unique NamemRNA_Ecto-sp6_S_contig98.18749.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18749.1 vs. uniprot
Match: D7G0W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W8_ECTSI)

HSP 1 Score: 440 bits (1132), Expect = 7.190e-156
Identity = 227/231 (98.27%), Postives = 229/231 (99.13%), Query Frame = 1 
Query:    4 STIEPKAVRSRSKSPTRSPLTRTASKTNLVINTQAGHDAADKGEPLISPARFSPITAGKRLLKPSSPRKITMRPVVKEESMLSRYFSQSLPAKLSAVLSVVAIAVAAALFFGEGDGPKLVKRDAPLFPGDRLKGGQYISFCTSIIATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTGAKGGGGKEALYELVYSGDRVVLNKDGKVKWSSSVKSLPKNMRPWPLAQ 696
            STIEPKAVRSRSKSPTRSPL RTASKTNLVI+TQAGHDAADKGEPLISPARFSPITAGKRLLKPSSPRKITMRPVVKEESMLSRYFSQSLPAKLSAVLSVVAIAVAAALFFGEGDGPKLVKRDAPLFPGDRLKGGQYISFCTSIIATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTGAKGGGGKEA YELVY+GDRVVLNKDGKVKWSSSVKSLPKNMRPWPLAQ
Sbjct:    2 STIEPKAVRSRSKSPTRSPLARTASKTNLVIDTQAGHDAADKGEPLISPARFSPITAGKRLLKPSSPRKITMRPVVKEESMLSRYFSQSLPAKLSAVLSVVAIAVAAALFFGEGDGPKLVKRDAPLFPGDRLKGGQYISFCTSIIATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTGAKGGGGKEAFYELVYTGDRVVLNKDGKVKWSSSVKSLPKNMRPWPLAQ 232
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0W8_ECTSI7.190e-15698.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:154030..157776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size699
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionBulb-type lectin domain
Ec32 orthologEc-23_002020.1
Cds size699
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18749.1prot_Ecto-sp6_S_contig98.18749.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 154030..157776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350602.55093-CDS-Ecto-sp6_S_contig98:154029..1540951682350602.55093-CDS-Ecto-sp6_S_contig98:154029..154095Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 154030..154095 -
1682350602.56067-CDS-Ecto-sp6_S_contig98:154510..1546751682350602.56067-CDS-Ecto-sp6_S_contig98:154510..154675Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 154511..154675 -
1682350602.569548-CDS-Ecto-sp6_S_contig98:155111..1552411682350602.569548-CDS-Ecto-sp6_S_contig98:155111..155241Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 155112..155241 -
1682350602.5782166-CDS-Ecto-sp6_S_contig98:155768..1558721682350602.5782166-CDS-Ecto-sp6_S_contig98:155768..155872Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 155769..155872 -
1682350602.587038-CDS-Ecto-sp6_S_contig98:156402..1565311682350602.587038-CDS-Ecto-sp6_S_contig98:156402..156531Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 156403..156531 -
1682350602.6054301-CDS-Ecto-sp6_S_contig98:157671..1577761682350602.6054301-CDS-Ecto-sp6_S_contig98:157671..157776Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 157672..157776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18749.1

>prot_Ecto-sp6_S_contig98.18749.1 ID=prot_Ecto-sp6_S_contig98.18749.1|Name=mRNA_Ecto-sp6_S_contig98.18749.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=233bp
QSTIEPKAVRSRSKSPTRSPLTRTASKTNLVINTQAGHDAADKGEPLISP
ARFSPITAGKRLLKPSSPRKITMRPVVKEESMLSRYFSQSLPAKLSAVLS
VVAIAVAAALFFGEGDGPKLVKRDAPLFPGDRLKGGQYISFCTSIIATGC
KPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTGAKGGGGKEALYELVYS
GDRVVLNKDGKVKWSSSVKSLPKNMRPWPLAQ*
back to top

mRNA from alignment at Ecto-sp6_S_contig98:154030..157776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18749.1 ID=mRNA_Ecto-sp6_S_contig98.18749.1|Name=mRNA_Ecto-sp6_S_contig98.18749.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3747bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:154030..157776- (Ectocarpus species6 EcLAC_371)
CAGTCAACCATTGAACCCAAGGCTGTGCGCAGTCGATCAAAATCCCCGAC
TAGGTCTCCGCTCACTCGGACGGCCTCCAAAACCAACCTTGTCATCAACA
CGCAGGTACCTACAGTACGAAACGCATATTTCTATGTGTATCATACATGC
ATGCATGCGAAAGTTGCGACGTTTTTTTTCCCCCCAAGTACCAGTATATC
ACAATGAATCCATCTCCATCCATTTTAGACGATTAACACACAATCACAGA
GAGGCTACCCTCTACGAGATAATTGATACCACAATCGAAACTTTTTTGTA
TTACTGCTGAATGAGGGGCAAGTCGCCACTTCGTGCATGGTCCTGGTCAT
GGTGTGTTGTTGTTGTTGCCCGAACTGTTTGGTCACAGACGTGCTGAGGA
CTTGGTACACGATAGGATAGAGTTTCTTCTTGTTGGCATCGATCGCTCTG
ACCGGCTTACCCCTTGCCACAAATTCATGTCAGCATCGATCGCTCTGACA
GACTCCCCCCATATCACAAGTCCATGTCAGCATTGATCGCTCTGGCCGGC
TTACCCCTTACCACAAGGACAAACACGCCTCCAAAGCAAGTCGTTTTTTG
TGTTGAACCGCTTCTGCGCCCCCGACCCCCACGTCTCCGCCCGAAACACC
AGCTGAAGGCAACACAGCAGACATACAACCAATATTTTGAGGTCCCAGGC
GTGCCCTTTTCGGCTTCATGCGAACGCGAAAACTCTTCTATTGTCGTACG
ATACACGCATCTGTGGCACCGAACTTCTTGTTTTGGGATATGTAGTTGAG
GTCGTTGACTGGGTTGTTGCTGCGGCCCGGCATGTGCTGAGACTGGTACC
CCTGTTTCGTCATACCGAAGTCTAGGAATGGGCTATGCTCACCACCTACA
ACAACGCCATCCTTTAATTTTTGCGCCCTGGCCCCGGGCCTCAAACCTGT
TCACCAGTAGCCCCCCCCCCCTGGCTCCGTCCTCTCGAGGATGCGTGGTC
AATGGTCTAACTGCTCAGGCATGAACAACCCCTCCCCCTCCCCCCGCCTC
CCCCATAGCTAGCGGGGGGCCACTGAGCTCGGTACCAGCAAGAAAAATCC
ACGTTCGTGAAAATAAGGTTACTAGATACGTATGCACAACGGATGGTGTA
GTTTCATTGCACGCGGTACGACGTTTCCGTCCAACAATTTATCCACCACC
AATGCATTGAACCGTCAATAATCCCTCATTGTTGGGGAATCCAAGGCTGG
GCATGACGCCGCGGACAAAGGAGAGCCGCTGATATCGCCGGCGAGGTTCA
GCCCCATCACCGCGGGGAAGCGGCTGCTCAAGCCCTCATCCCCCCGCAAG
ATCACGATGAGACCGGTGGTAAAGGTGGGCAGGGTTGGTATGTATGCCAC
GTGTTTGGCGGCAACACGAAAAATAAGAGCCATGATGTTGAATTGTGTTT
TTGTTGCTTTCAGCAGCAGTGGGTTATCTTGTTGTTTTGATACTAGCAAG
CATGGCTATTATTGTCTTTCCGAACGTGCGAATTGAGAAAAGTTGAGAAA
AGTTGGGCCTTGGCTGGTTCCACGGCAGACTAGCGCGAATTTCCGTCAAC
GACAGACGAGGACGACGACAACGGCAACGACAAGAACAACGGCACCAGTG
AACAATGTGCACAGCAACAGCTATTTTACAAGCAACTACGAGGACAGCAA
CAAACGACAAGAACAACGGCACCAATGAAAAATGTGCACAGCAACAGCTA
TTTTACAAACAACTACGAGGACAGCAACAAACAACAAGAACAACGGCACC
AGTAACAAGACCAATGTGCGCAGAACAAAGACGAGACGACATTACAACAA
CGTTGTACCAACCCCTCCCCGCCACAATCATGACACCGTCGTATACCCCT
GCAGGAAGAGAGCATGCTGTCGAGGTACTTTTCCCAGAGCCTGCCGGCGA
AGCTCTCGGCGGTTCTCTCTGTCGTGGCCATCGCCGTCGCTGCAGCCCTC
TTCTTCGGGTGAGACAATTGTTTTTGTTGTTGTTGTCGTCGTCGTTGATG
GTGAGGCTCTTGTCGATGTTGGCCGTTGTTGTTCTCGGCGGTTGCTGCTG
ATGTTAGTGCTGTTTTTGTACCCTGTAGGGTATTGTTGTCGTCGTTGTTG
TTGTCGTTGTCTTCCTCGTTGGTCGTGAGGTTGTTCTCGATGTTGGCTGT
TATTGTTGCTCATGTTACTGCCGTTTTATACCGTGTCGGATGTTGTCATC
GCTGTTGTTGTTGTTGTCTTCGTCGTTGATTGCGAGGCTCTTCGTGGTAA
GAGGCGTGCATATCATTTGAGCGGGCATGAACGGTGGGGACATCAGATTC
TTTTTTTGCCCTGGAAAGACAACGATCACAGCAACAGTCTCGGCCTCGCG
CCCTTCCCCGGTGTCTCGGGACAGTTTTGAGTCTCAAGAGAGGTTCTGGA
TAAGACAACGATCACAACGGCCATTCTTGGCTTCGCCCCCTGCCTGTTTC
TTCGGAACATTTTTTTTGTCTGTTTTCTGCCCCAGGGAGGGTGATGGTCC
CAAGCTGGTGAAGCGTGATGCCCCCCTCTTCCCGGGGGATCGATTGAAGG
GCGGCCAGTACATTTCGTTCTGCACGAGCATCATCGCCACCGGGTGCAAG
CCCAAGTACTTCGAGGTGCGTCCGAGAAAAAATGTAAAGCGGGAAAAAAG
ACAAAAACGAACTTCACAAGACGTATATAGACGAAACAAGCGCACGGCCA
CCCCCAAGAAAATGTAAAACGTAAAAAAACAAAATGCAACCATCGAAACG
ACGACAAAACACCCACACTAATACCGTCCCTGTAGAATACTATTGTACCA
ACGGAGGAATTGAGACCATTCGACCGTTACCTCCCTCAAGATGGCACCCG
GCCAAGTTCCAACCGGCGCTGTTTCTTAGCCGTTTGAGGGCCTGGGCCTG
TCACCCCATCACACCAGACCACGACGACAACGGCAACAGCTACCATTCTA
CAGCAGTACCTACCGTGTGAGTCTTCGTTCAGCCTTACACGTGAGTATAT
AGACATTCAGGGCAACGCTTCTTGCGCTTGTATTCGCGTGCTCCGGAGCA
GCTAGGTCGCGATGGCTCTCTCGGAGTATACGGTGGGAAGTCGCCGTACG
CACAGAAGGCCAAGCTGTGGACGGCGGGCACGGGCGCCAAGGGTGGCGGG
GGGAAAGAGGCGTTGTACGAACTGGTGTACAGCGGGGACAGGGTGGTGCT
CAACAAGGACGGCAAGGTGTGGAAAAAAGTGAAAAATGAAGCGAGTTTTT
GCATATTTGCTACTAAAGGTGGTACTAATTAGTGTTGTGCCCTCCCTGTT
TTTCCCAGCTCATTCAAGTGAAATTGCTAACAACTGTTGTAGCCTTCCAT
TTTGCCCAGCTGAGTCGTTCGCTTTTCTCTCCCTTTTTGCGTAAAAGGGG
AGGACATGCAGTCACTCGTTCATGCTGCCTGGCTTTGCTTGCGGCTGGCC
GGGCGGGGCGGTTCTCCGTTGATTATGATTCGACGGTGCCCCTATGGGGC
TGACAGATAGAGAGAGCCCAACGGCTCCGATATTGCGTAGACACGGCTCG
TTGACGTGTAGGGCAAAACCTGCCGTAAGGGAGCACAATCCATGCGATTC
ACTCGCTTTTCTTTTTTCCTGTTTACCTCAGGTGAAATGGTCATCTTCGG
TGAAGAGCTTGCCTAAGAACATGCGCCCCTGGCCACTCGCGCAATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:154030..157776-

>mRNA_Ecto-sp6_S_contig98.18749.1 ID=mRNA_Ecto-sp6_S_contig98.18749.1|Name=mRNA_Ecto-sp6_S_contig98.18749.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:154030..157776- (Ectocarpus species6 EcLAC_371)
CAGTCAACCATTGAACCCAAGGCTGTGCGCAGTCGATCAAAATCCCCGAC
TAGGTCTCCGCTCACTCGGACGGCCTCCAAAACCAACCTTGTCATCAACA
CGCAGGCTGGGCATGACGCCGCGGACAAAGGAGAGCCGCTGATATCGCCG
GCGAGGTTCAGCCCCATCACCGCGGGGAAGCGGCTGCTCAAGCCCTCATC
CCCCCGCAAGATCACGATGAGACCGGTGGTAAAGGAAGAGAGCATGCTGT
CGAGGTACTTTTCCCAGAGCCTGCCGGCGAAGCTCTCGGCGGTTCTCTCT
GTCGTGGCCATCGCCGTCGCTGCAGCCCTCTTCTTCGGGGAGGGTGATGG
TCCCAAGCTGGTGAAGCGTGATGCCCCCCTCTTCCCGGGGGATCGATTGA
AGGGCGGCCAGTACATTTCGTTCTGCACGAGCATCATCGCCACCGGGTGC
AAGCCCAAGTACTTCGAGCTAGGTCGCGATGGCTCTCTCGGAGTATACGG
TGGGAAGTCGCCGTACGCACAGAAGGCCAAGCTGTGGACGGCGGGCACGG
GCGCCAAGGGTGGCGGGGGGAAAGAGGCGTTGTACGAACTGGTGTACAGC
GGGGACAGGGTGGTGCTCAACAAGGACGGCAAGGTGAAATGGTCATCTTC
GGTGAAGAGCTTGCCTAAGAACATGCGCCCCTGGCCACTCGCGCAATAA
back to top