mRNA_Ecto-sp6_S_contig97.18726.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18726.1
Unique NamemRNA_Ecto-sp6_S_contig97.18726.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig97.18726.1 vs. uniprot
Match: A0A6H5KQA5_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA5_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 6.390e-91
Identity = 223/294 (75.85%), Postives = 228/294 (77.55%), Query Frame = 1 
Query:  196 GDTPHEGDPTSAXXXXXXXAPKADAKSNDNGEVASTNNXSRGSSGSTNNQDDRVRVLCRFRRTEERDGEERGSPRGKWLVFGGGXXXXXXXXXXHEGGEGAPLDTVSVRMGGAWSRRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGATATLSASPAXXXXXXXXXXDVTTPSGGNAGATAPSPCHAGSAGVLPLXXXXPSSPFAGMPEAAPTNSAPVPASPPLPGYSSSVSPATLLMPXXXXXXXXXXXXGGPGTGLHPIGTVPSSDAAGAVS 1077
            GD PHEGDPTSA       APKA+AKSND+ EVA    X       T+NQDDRVRVLCRFRRT ERDGEERGSPRGKWLVFGGGXXXXXXXXX HEGGEGAPLDTVSVRMGGAWS RGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTG+GKTYTMGGATATLSA   XXXXXXXXXX VTTPSGG A      PCH GSAGVLP XXXX  SPFAG PEA PTN APVPASP                 XXXXXX XXX   GPG  LHPIG +PSS AAGAVS
Sbjct:   82 GDIPHEGDPTSAPAAAD--APKAEAKSNDSVEVAXXXXXXXXXXX-TSNQDDRVRVLCRFRRTVERDGEERGSPRGKWLVFGGGXXXXXXXXX-HEGGEGAPLDTVSVRMGGAWSTRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGAGKTYTMGGATATLSA---XXXXXXXXXXGVTTPSGGGAXXXXXXPCHPGSAGVLPXXXXXXXSPFAGAPEATPTNLAPVPASPXX-XXXXXXXXXXXXXXXXXXXXLXXXLPDGPGRRLHPIGIMPSSHAAGAVS 367
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BLAST of mRNA_Ecto-sp6_S_contig97.18726.1 vs. uniprot
Match: D8LL93_ECTSI (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL93_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 3.780e-70
Identity = 142/184 (77.17%), Postives = 144/184 (78.26%), Query Frame = 1 
Query:  523 MGGAWSRRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGATATLSASPAXXXXXXXXXXDVTTPSGGNAGATAPSPCHAGSAGVLPLXXXXPSSPFAGMPEAAPTNSAPVPASPPLPGYSSSVSPATLLMPXXXXXXXXXXXXGGPGTGLHPIGTVPSSDAAGAV 1074
            MGGAWSRRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGATATLSASPA      XXXX   TPSGGN            SAGVLPL    PSSPFAGMPEAAPTNSAPVPASP   GYSSSVSP+TLLMPXXXXXX      GG  TGLHPI T+PSS A G V
Sbjct:    1 MGGAWSRRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGATATLSASPAAATPATXXXXXXXTPSGGNXXXXXXXXXXXXSAGVLPLPAPSPSSPFAGMPEAAPTNSAPVPASP---GYSSSVSPSTLLMPXXXXXXLPLQPPGGLRTGLHPIWTLPSSYALGVV 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQA5_9PHAE6.390e-9175.85Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D8LL93_ECTSI3.780e-7077.17Kinesin motor domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:499947..501832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score227.6
Seed ortholog evalue9e-57
Seed eggNOG ortholog2880.D8LL93
Model size1077
KEGG koko:K10405,ko:K10406
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
Ec32 ortholog descriptionKinesin-like protein
Ec32 orthologEc-27_001770.1
Cds size1077
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350599.5372872-CDS-Ecto-sp6_S_contig97:499946..5004351682350599.5372872-CDS-Ecto-sp6_S_contig97:499946..500435Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 499947..500435 -
1682350599.5466313-CDS-Ecto-sp6_S_contig97:501244..5018321682350599.5466313-CDS-Ecto-sp6_S_contig97:501244..501832Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 501245..501832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18726.1prot_Ecto-sp6_S_contig97.18726.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 499947..501832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18726.1

>prot_Ecto-sp6_S_contig97.18726.1 ID=prot_Ecto-sp6_S_contig97.18726.1|Name=mRNA_Ecto-sp6_S_contig97.18726.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=359bp
MVDVVASTAVAVTESSSSGSGCGGSSTVSSPSPLLPQPPLVPPPGPSPST
TPRTATAAAAAAAAAGDTPHEGDPTSAPAAAAATAPKADAKSNDNGEVAS
TNNNSRGSSGSTNNQDDRVRVLCRFRRTEERDGEERGSPRGKWLVFGGGG
GDGGGGGGGHEGGEGAPLDTVSVRMGGAWSRRGFDRVLKPGVDQAQVYSD
VKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGATATLSASPAAATPATAA
AADVTTPSGGNAGATAPSPCHAGSAGVLPLPAPSPSSPFAGMPEAAPTNS
APVPASPPLPGYSSSVSPATLLMPPPPPPPLPPPPPGGPGTGLHPIGTVP
SSDAAGAVS
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mRNA from alignment at Ecto-sp6_S_contig97:499947..501832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18726.1 ID=mRNA_Ecto-sp6_S_contig97.18726.1|Name=mRNA_Ecto-sp6_S_contig97.18726.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1886bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:499947..501832- (Ectocarpus species6 EcLAC_371)
ATGGTAGACGTTGTAGCCTCCACTGCTGTTGCGGTGACCGAAAGCAGCAG
CAGCGGCAGCGGCTGCGGCGGCAGCAGCACCGTGTCGTCGCCGTCGCCGC
TCCTGCCGCAGCCGCCGCTTGTTCCTCCGCCGGGTCCGAGCCCCTCGACA
ACTCCGCGCACTGCTACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGGTGA
CACCCCCCACGAGGGAGATCCGACGAGCGCTCCCGCCGCCGCCGCCGCCA
CCGCACCCAAGGCCGACGCGAAGAGCAACGACAACGGGGAGGTGGCCAGC
ACCAACAACAACAGCCGCGGCAGCAGCGGCAGCACCAATAATCAAGACGA
CCGAGTTCGGGTGCTGTGCAGATTTCGGCGCACGGAGGAGAGGGACGGGG
AGGAACGGGGATCGCCCCGCGGCAAGTGGTTGGTCTTCGGGGGCGGGGGG
GGGGATGGGGGCGGCGGCGGAGGAGGCCACGAGGGCGGGGAGGGAGCGCC
GCTGGACACCGTCTCGGTGCGCATGGGAGGCGCGTGGAGCAGGAGGGGCT
TCGACAGGGTTCTGAAGCCCGGCGTCGATCAAGCCCAGGTGAATCAAGAA
ACCCACGAGTGTAGGCGGCCACACCCATGTAGTTGCTTTTGGAAAAGGCA
GGCTGAGGTTGGAAGCGTTGGCGGGATATGGTTTAGGAAACGAGAGATCC
CCACCAATCGGAGGCCGCCTCTTTTCGGAACCGCTACATACATATTTACC
CTGCCCGTTGCCGATTGACCGGACCGAAAAAGCATCACACAACACGACCA
CCCAGCTGCGCCCAAAGCCAACAACACCCATCCACGGCAAAAGGATTTCC
CATTTGAGGTGTCGGCGCGGGTACTTGGTTATCACGCTCGCGGGCTCTTG
TCGAGAGCGTTTCTGCACAACAGGAGTGACTCAAGTGACAGAGAGTAAGG
CACCTGTGCAAGTAGAGAGCCTCGCGCGTCAAGTACATCAAACTCATATA
ATCCAATCCATGTAACCTCCGAAGTTCTCGGAGATCCGTATTCTCCAAAA
ATATTTCCTGTGCGTTCGTGTCGGCGTGTGTCTGGCTCTCCACTACCAGC
GCATTGCTTGCGAAATGAAGTGAGATGGAAAGTCACGACTGGTCGTTGCT
TGACTCGGTCGTGTAGCGCCGCCGACGGTGTAGGGTGTGGCCAGAGGAGA
AAAATACGGCGAGAGAAGTTGCTTCCGCCTGTACACAACGGGAAGCTGTC
GTCACTGCCGTCTCGCGTTTCTCCGTCGTCAGTCGCCACGCCTTGTCGCC
GGATCATGAATCCTCTGTAACTCCCTCCCCGCACTGCAAAATATGACCAT
ACCCCCCCTCTCCGTTTTCTCTCTGTCCCGTCTTGACCCGACCACAGGTG
TACAGCGACGTGAAACGCGTGGCCCACGGGGTCTCCCAGGGCTTCAACGG
CACCATCTTCGCCTACGGCCAGACGGGCTCCGGCAAGACCTACACCATGG
GAGGCGCGACGGCTACGCTGTCCGCCTCCCCAGCCGCCGCCACCCCCGCC
ACTGCCGCCGCTGCCGATGTGACGACGCCATCGGGGGGGAACGCTGGGGC
GACAGCCCCGTCTCCTTGTCACGCCGGCTCCGCCGGCGTCTTGCCGTTGC
CGGCGCCCTCGCCGTCGTCGCCTTTCGCCGGGATGCCCGAAGCGGCGCCG
ACAAACTCGGCGCCGGTGCCGGCGTCGCCCCCGCTGCCGGGTTATTCTTC
TTCGGTGTCTCCCGCGACCCTCCTGATGCCACCGCCTCCACCGCCGCCGC
TGCCACCGCCGCCGCCCGGCGGGCCCGGAACGGGGCTGCACCCGATCGGG
ACCGTGCCGTCCTCCGACGCCGCTGGGGCCGTGTCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:499947..501832-

>mRNA_Ecto-sp6_S_contig97.18726.1 ID=mRNA_Ecto-sp6_S_contig97.18726.1|Name=mRNA_Ecto-sp6_S_contig97.18726.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1077bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:499947..501832- (Ectocarpus species6 EcLAC_371)
ATGGTAGACGTTGTAGCCTCCACTGCTGTTGCGGTGACCGAAAGCAGCAG
CAGCGGCAGCGGCTGCGGCGGCAGCAGCACCGTGTCGTCGCCGTCGCCGC
TCCTGCCGCAGCCGCCGCTTGTTCCTCCGCCGGGTCCGAGCCCCTCGACA
ACTCCGCGCACTGCTACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGGTGA
CACCCCCCACGAGGGAGATCCGACGAGCGCTCCCGCCGCCGCCGCCGCCA
CCGCACCCAAGGCCGACGCGAAGAGCAACGACAACGGGGAGGTGGCCAGC
ACCAACAACAACAGCCGCGGCAGCAGCGGCAGCACCAATAATCAAGACGA
CCGAGTTCGGGTGCTGTGCAGATTTCGGCGCACGGAGGAGAGGGACGGGG
AGGAACGGGGATCGCCCCGCGGCAAGTGGTTGGTCTTCGGGGGCGGGGGG
GGGGATGGGGGCGGCGGCGGAGGAGGCCACGAGGGCGGGGAGGGAGCGCC
GCTGGACACCGTCTCGGTGCGCATGGGAGGCGCGTGGAGCAGGAGGGGCT
TCGACAGGGTTCTGAAGCCCGGCGTCGATCAAGCCCAGGTGTACAGCGAC
GTGAAACGCGTGGCCCACGGGGTCTCCCAGGGCTTCAACGGCACCATCTT
CGCCTACGGCCAGACGGGCTCCGGCAAGACCTACACCATGGGAGGCGCGA
CGGCTACGCTGTCCGCCTCCCCAGCCGCCGCCACCCCCGCCACTGCCGCC
GCTGCCGATGTGACGACGCCATCGGGGGGGAACGCTGGGGCGACAGCCCC
GTCTCCTTGTCACGCCGGCTCCGCCGGCGTCTTGCCGTTGCCGGCGCCCT
CGCCGTCGTCGCCTTTCGCCGGGATGCCCGAAGCGGCGCCGACAAACTCG
GCGCCGGTGCCGGCGTCGCCCCCGCTGCCGGGTTATTCTTCTTCGGTGTC
TCCCGCGACCCTCCTGATGCCACCGCCTCCACCGCCGCCGCTGCCACCGC
CGCCGCCCGGCGGGCCCGGAACGGGGCTGCACCCGATCGGGACCGTGCCG
TCCTCCGACGCCGCTGGGGCCGTGTCC
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