mRNA_Ecto-sp6_S_contig97.18679.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18679.1
Unique NamemRNA_Ecto-sp6_S_contig97.18679.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig97.18679.1 vs. uniprot
Match: A0A6H5JNV2_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV2_9PHAE)

HSP 1 Score: 893 bits (2307), Expect = 0.000e+0
Identity = 505/639 (79.03%), Postives = 527/639 (82.47%), Query Frame = 1
Query:    1 MATQQTIRVVRWRDVGSEGVMSYMAPKMAQNHPLLMSGHWAHQVLNKDAAQRWSTFTGIKSVLAARGLDQLRVDISCTKKGDSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSRRR---EAGSA*RHRGRVPHAF---------LCLGGRPPPDQPVDGGSGDND*PTLRRQPQPSLRSQGEQAGRSAAAGYDSRCSRHAGVL*VRKSPGLQPAETAAVVDGDEAARKGAVYADVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSKHMRNYYLRCLIESLLADRLREATAGDEDRRAIMAAADIEVATVTGDHAPKPAADTSAAAAVEREWSPLRSPTSTVEERNLYLRTIGTDSMKEELPRVAHERPQDWARLVSGLDPLTAYVVTTQWEAAGGAAGMPEFYAAIFGTGEEMAATGGGEEDGRNRAQAATAAATAETTETSGTVQLAGSEGIGRAQQPATGAACDGVIVGAGGVGGFGVNGGTAGQASYGSGVASSGEAAGSVALLAGHVGAGEXXXXXXXAVATMNTAVWGGDGARCEASLQAQQQQXXXXXXXXXXXXXDVEAGAAGVASQEVSGVALQERLVHLREAFAREQCGVVLNRAVGW 1881
            MATQ+TIRVVRWRDVGSEGVMSYMAPKMA+NHPLLM G+WAHQVLNKDAAQRWSTF GIKSVLA RGLDQLRVDISCTKKG+SFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPV+SR     E  SA     R P            L +G        +   +  N    L+   + +L      A   A   + S  + H+G         LQPAETA +V GDEAARKGAVYADVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPS HMRNY+LRCL+ESLLADRLREATAGDEDRRAIMAAADIEVATVTGDH PKPAADTSAAAAVEREWSPL  PTSTVEERNLYLRT+GTD MKEELPRVAHERPQDWARLVSGLDPLTAYVVTTQWEAAGGA GMPEFYAAIFGTGEEMAATGGGEED RNRA+ ATAAATA  TET GTVQLAGSEGIGR QQPATGAACDG +VGAGGVG F V+GG AGQASYGSGVAS GEAAGSVALL GHVGAGE       A+ TMNTAVWGGDGARCEASLQAQQQQ XXXXXXXX    DV AGAAG ASQEVSGVALQERLV LREAF REQCGVVLNRAVGW
Sbjct:    1 MATQRTIRVVRWRDVGSEGVMSYMAPKMAENHPLLMCGYWAHQVLNKDAAQRWSTFAGIKSVLATRGLDQLRVDISCTKKGNSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVISREEGKPEVLSAIAGEFRTPSCVAEEDLLQINLWMGAMETTTN-LHYDANHNLLFVLKGSKRVALLPPDMTADVDAMPVF-SESANHSG---------LQPAETAILVHGDEAARKGAVYADVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSGHMRNYHLRCLVESLLADRLREATAGDEDRRAIMAAADIEVATVTGDHVPKPAADTSAAAAVEREWSPLCGPTSTVEERNLYLRTMGTDRMKEELPRVAHERPQDWARLVSGLDPLTAYVVTTQWEAAGGAVGMPEFYAAIFGTGEEMAATGGGEEDARNRAEGATAAATAGATETGGTVQLAGSEGIGRTQQPATGAACDGAVVGAGGVGRFRVDGGGAGQASYGSGVASGGEAAGSVALLPGHVGAGEAAAAAAAAITTMNTAVWGGDGARCEASLQAQQQQLXXXXXXXXVSQQDVGAGAAGFASQEVSGVALQERLVRLREAFVREQCGVVLNRAVGW 628          
BLAST of mRNA_Ecto-sp6_S_contig97.18679.1 vs. uniprot
Match: D8LLE0_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE0_ECTSI)

HSP 1 Score: 563 bits (1450), Expect = 1.570e-194
Identity = 310/390 (79.49%), Postives = 319/390 (81.79%), Query Frame = 1
Query:    1 MATQQTIRVVRWRDVGSEGVMSYMAPKMAQNHPLLMSGHWAHQVLNKDAAQRWSTFTGIKSVLAARGLDQLRVDISCTKKGDSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSRRR---EAGSA*RHRGRVPHAF---------LCLGGRPPPDQPVDGGSGDND*PTLRRQPQPSLRSQGEQAGRSAAAGYDSRCSRHAGVL*VRKSPGLQPAETAAVVDGDEAARKGAVYADVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSKHMRNYYLRCLIESLLADRLREATAGDEDRRAIMAAADIEVATVTGDHAPKPAADTSAAAAVEREWSPLRSPTSTVEERNLYLRTIGTDSMKE 1134
            MATQQTIRVVRWRDVGSEGVMSYMAPKMAQNHPLLMSGHWAHQVLNKDAAQRWSTFTGIKSVLAARGLDQLRVDISCTKKGDSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSR     E  SA     R P            L +G        +   +  N    L+   + +L      AG  A   + S  + H+G         LQPAETAAVVDGDEAARKGAVYADVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSKHMRNYYLRCLIESLLADRLREATAGDEDRRAIMAAADIEVATVTGDHAPKPAADTSAAAAVEREWSPLRSPTSTVEERNLYLRTIGTDSMKE
Sbjct:    1 MATQQTIRVVRWRDVGSEGVMSYMAPKMAQNHPLLMSGHWAHQVLNKDAAQRWSTFTGIKSVLAARGLDQLRVDISCTKKGDSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSREEGKPEVLSAIAGEFRTPSCVSKEDLLQINLWMGAMETTTN-LHYDANHNLLFVLKGSKRVALLPPDMTAGVHAMPVF-SESANHSG---------LQPAETAAVVDGDEAARKGAVYADVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSKHMRNYYLRCLIESLLADRLREATAGDEDRRAIMAAADIEVATVTGDHAPKPAADTSAAAAVEREWSPLRSPTSTVEERNLYLRTIGTDSMKE 379          
BLAST of mRNA_Ecto-sp6_S_contig97.18679.1 vs. uniprot
Match: A0A067C9Y8_SAPPC (JmjC domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C9Y8_SAPPC)

HSP 1 Score: 102 bits (254), Expect = 1.280e-19
Identity = 87/276 (31.52%), Postives = 122/276 (44.20%), Query Frame = 1
Query:  181 SVLAARGL---DQLRVDISCTKKG-DSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSRRREAGSA*RHRGRVPHAFLCLGGRPPPDQPVDGGSGD-ND*PTLRRQPQPSLRSQGEQAGRSAAA--GYDS-----RCSRHAGVL*VRKSPGLQPAETAAV------VDGDEAARKGAVYADVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSKHMRNYYLRCLIESLLADRLREATAGDEDRRAI 954
            ++LA+ G     +  VD++C     D++ GD   RQ V LK  D V   EA+  GQ HW    E  L +YL QCP+ S      +       +PH        PPP    +      N   TL             QA R+      YD+     R ++H  +       G  P  + +       +D  +A    A +  V   +A+FIPEGWWHQV S   T+AVN WF G RPAL + P  HM+ YY R L+E +LA   ++A     DR+ +
Sbjct:   17 ALLASAGFVAHHETVVDVACAPVAEDAYSGDVCLRQSVELKFGDFVAYYEAKRRGQSHWLMDTEDELQFYLAQCPLQSTTPATPAV------LPHLASTF---PPPKAIAEMALTQVNLWMTL-------------QASRTTLHYDAYDNVLTVVRGAKHVKLFAPTSDVGAHPVTSKSANHARLTLDELDARAPDATFT-VTPTDALFIPEGWWHQVSSDPFTIAVNYWFDGLRPALVQHP--HMQPYYARVLLEDMLAHARKQALQAYLDRQQV 267          
BLAST of mRNA_Ecto-sp6_S_contig97.18679.1 vs. uniprot
Match: K3W726_GLOUD (JmjC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W726_GLOUD)

HSP 1 Score: 95.9 bits (237), Expect = 2.450e-17
Identity = 113/377 (29.97%), Postives = 148/377 (39.26%), Query Frame = 1
Query:  208 QLRVDISCTKKGDSF-RGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSRRREAGSA*RHRGRVPHAFLCLGGRPPPDQPVDGGSGDND*PTLRRQPQPSLRSQGEQAGRSAA--AGYDSRCSRHAG-------VL*VRKSPGLQP-AET-----------------AAVVDGDEAARKGAVYAD-----VAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSKHMRNYYLRCLIESLLADRLREATAGDEDRRAIMAAADIEVATVTGDHAPKPAADTSAAAAVEREWSPLRSPTSTVEERNLY-LRTIGTDSMKEELPRVAHERPQDWARLVSGLDPLTAYVVTTQWEA 1236
            Q  VDI+C     +F  G++ SRQ V LK  D V   EA   GQ HW   D   L++YLCQCP+   R +A  +     ++   F+       P+                     S+ S  E   +     A + SR S H         VL  RK   L P +ET                   V   D       V A      V  G+A+ IPEGWWHQV S   T+AVN WF G R  L + P   M  YY R L+E L+    RE  A  + RR  M     E+    GD              +ER    LR  +   +E  L  L T+G    ++   R+A E P +W  L+         V+TT WEA
Sbjct:   42 QTVVDIACKAPSSTFYSGEERSRQNVELKFGDFVLFYEASHAGQRHWLQ-DVDDLEFYLCQCPIAVYRPDATCSQPVLPKIMDEFML------PE---------------------SVASYSESLSQVNLWIAVHSSRTSLHYDAYRNILVVLYGRKVVTLYPPSETRNLYAYPVHTKSTNHSQVNVAQPDLVKHPRFVNATSQRFIVNAGDALVIPEGWWHQVDSDAYTIAVNFWFDGVRQQLAQAPD--MTPYYSRVLLEDLMK---RETDAYLQQRRQRMI--QQELGQERGDF-------------MERI---LRCQSQAEKENMLIALDTLGPSEFRDAQVRLASEHPSEWRFLLENASEDFVAVLTTSWEA 367          
BLAST of mRNA_Ecto-sp6_S_contig97.18679.1 vs. uniprot
Match: T0QUU3_SAPDV (JmjC domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QUU3_SAPDV)

HSP 1 Score: 95.1 bits (235), Expect = 3.790e-17
Identity = 92/299 (30.77%), Postives = 124/299 (41.47%), Query Frame = 1
Query:   85 AQNHPLLMSGHW-AHQVLNKDAAQRWSTFTGIKSVLAARGL---DQLRVDISCTKKG-DSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSRRREAGSA*RHRGRVPHAFLCLGGRPPPDQPVDGGSGD--ND*PTLRRQPQPSLRSQGEQAGRSAAA--GYDS-----RCSRHAGVL*VRKSPGLQP-----AETAAVVDGDEAARKGAVYADVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSKHMRNYYLRCLIESLLADRLREA 924
            A   P L+   W AH     D A          ++LA+ G     +  VD++C     D++ GD   RQ V LK  D V   EA+  GQ HW    E  L +YL QCP+ S      +       +PH         PP + + G +    N   TL             QA R+      YD+     R ++H  +     +    P     A  A +   +  AR       V    A+FIPEGWWHQV S   T+AVN WF G RPAL + P  HM+ YY R L+E +L    + A
Sbjct:    3 ADRRPCLLPMAWHAHAAQGDDDATT--------ALLASAGFVAHHETVVDVACAPVAEDAYSGDVRLRQSVELKFGDFVAYYEAKRRGQAHWLMDTEDELQFYLAQCPLHSTAPATPAV------LPHLVSTF----PPPKAIAGMALTQVNLWMTL-------------QASRTTLHYDAYDNVLTVVRGAKHVKLFAPTTNVDAHPVTSKSANHAQLTLYELDARAPDATFTVTPTNALFIPEGWWHQVSSDPFTIAVNYWFDGLRPALVQHP--HMQPYYARVLMEDMLTHARKHA 268          
BLAST of mRNA_Ecto-sp6_S_contig97.18679.1 vs. uniprot
Match: A0A836CMX0_9STRA (Cupin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMX0_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.290e-16
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  413 KPEVLSAIAGEFRTPSCVSEEDLLQINLWMGAVETTTNLHYDANHNLLFVLKGSKRVALLPPDMTAGVHAMPVFSESANHPGYS 664
            KP  +  +A  FR P+ + E +LLQI LW G  ET+TNLHYD NHN+LFVL GSK V LLPP  T  V A P ++ + NH   S
Sbjct:   15 KPVAVPQLAPCFRAPAFIDETELLQICLWAGPQETSTNLHYDCNHNVLFVLAGSKVVTLLPPSATPRVKAFPAYATTPNHSALS 98          
BLAST of mRNA_Ecto-sp6_S_contig97.18679.1 vs. uniprot
Match: W4GXF1_9STRA (JmjC domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXF1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.210e-14
Identity = 73/246 (29.67%), Postives = 99/246 (40.24%), Query Frame = 1
Query:  217 VDISCTKKG-DSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSRRREAGSA*RHRGRVPHAFLCLGGRPPPDQPVDGGSGDND*PTLRRQPQPSLRSQGEQAGRSAAAGYDSRCSRHAGVL*VRKSPGLQPAETAAVVDGDEAARKGAVYA----------------DVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSKHMRNYYLRCLIESLL 903
            VD++CT+   D + GD   RQ V LK  D V   +A+  G  HW    E  L +YL QCP++S   +  +       +PH    +    PP       +  N   T+              A    +  YD+       VL   K   L P     V+       K + +                 DV    A++IPEGWWHQV S   TVA+N WF G RP L   P+  M  YY R L+E L+
Sbjct:   42 VDVACTQPSEDVYSGDVRLRQSVELKFGDFVAYFQAKAAGTSHWLMDTENDLHFYLAQCPLLSTSTDVPAV------LPHLLPAMASLRPPILDNIQLTQINLWMTI--------------ASSDTSVHYDAY-ENVLHVLQGTKCVRLYPPSATPVIQAHAIYSKSSNHTTLSLAQTKALPHFIEFDVHANMALYIPEGWWHQVRSEPLTVAMNYWFDGMRPTLVAQPA--MVPYYARVLVEDLV 264          
BLAST of mRNA_Ecto-sp6_S_contig97.18679.1 vs. uniprot
Match: A0A1V9ZL82_9STRA (JmjC domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZL82_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.240e-14
Identity = 72/243 (29.63%), Postives = 100/243 (41.15%), Query Frame = 1
Query:  217 VDISCTKKGDS-FRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSRRREAGSA*RHRGRVPHAFLCLGGRPPPDQPVDGGSGDND*PTLRRQPQPSLRSQGEQAGRSAAAGYDS--------RCSRHAGVL*VRKSPGLQP-----AETAAVVDGDEAARKGAVYADVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSKHMRNYYLRCLIESLL 903
            VD++C    ++ + GD   RQ V LK  D V    A+  G  HW    E  L +YL QCP++S +             P     L G  P   P            + + P   +      A  +    YD+        R +++  +     +    P     A  + +   D  AR+      V    A+FIPEGWWHQV S   T+AVN WF G RPAL   P  HM+ YY R L+E L+
Sbjct:   40 VDVACAPPSEAAYSGDVRLRQSVELKFGDFVAYYSAKCSGGTHWLMETEDELQFYLAQCPLLSTQ-------------PSTPAVLPGLAPLFPPPAA---------IAKVPMTQVNLWMTLAASATTLHYDAYDNILRVVRGTKYVRLFTPTSAVAAHPVYSKSANHSLLQMADIEAREPTYSFTVTPNNALFIPEGWWHQVSSEPFTIAVNYWFDGLRPALVMHP--HMQPYYARVLVEDLI 258          
BLAST of mRNA_Ecto-sp6_S_contig97.18679.1 vs. uniprot
Match: A0A024U5K3_9STRA (JmjC domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5K3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.340e-14
Identity = 76/257 (29.57%), Postives = 115/257 (44.75%), Query Frame = 1
Query:  217 VDISCTKKG-DSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSRRREAGSA*RHRGRVPHAFLCLGGRPPPDQPVDGGSGDND*PTLRRQPQPSLRSQGEQAGRSAAAGYDSRCSRHAGVL*VRKSPGLQP------AETAAVVDGDEA-ARKGAVYADVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSKHMRNYYLRCLIESLLADRLREAT--AGDEDRRAIM 957
            VD++CT+   D++ GD   RQ V LK  D V   +A++ G  HW    E  L +YL QCP+ S   +  +       +P+   C     PP       +  N   T+     PS  S    A  +     +   S+   +     +P +QP      +    ++  +E+ A    V  +V    A++IPEGWWHQV S+  TVAVN WF G R  L   P+  M  YY R ++E L+     +A   A D+ R  ++
Sbjct:   42 VDVACTQPSVDAYSGDVRLRQSVELKFGDFVAYYQAKQGGSFHWLMEAESDLQFYLAQCPLYSTSADVPAV------LPNLLPCCAALKPPVLDTVDVTQINLWMTVA----PSDTSVHYDAYENILHVVEG--SKRVRLYPPSATPAIQPHAIYSKSSNHTILTLEESKALPDFVEFNVDANTALYIPEGWWHQVHSASFTVAVNYWFDGMRSRLLAQPT--MVPYYARVVVEDLVRSARLDAMKDAVDQSRHRLL 284          
BLAST of mRNA_Ecto-sp6_S_contig97.18679.1 vs. uniprot
Match: W4GYF0_9STRA (JmjC domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYF0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.970e-14
Identity = 73/246 (29.67%), Postives = 99/246 (40.24%), Query Frame = 1
Query:  217 VDISCTKKG-DSFRGDKASRQQVNLKLMDMVEIAEAQELGQPHWASSDEVGLDYYLCQCPVVSRRREAGSA*RHRGRVPHAFLCLGGRPPPDQPVDGGSGDND*PTLRRQPQPSLRSQGEQAGRSAAAGYDSRCSRHAGVL*VRKSPGLQPAETAAVVDGDEAARKGAVYA----------------DVAEGEAIFIPEGWWHQVFSSRGTVAVNVWFKGARPALCEGPSKHMRNYYLRCLIESLL 903
            VD++CT+   D + GD   RQ V LK  D V   +A+  G  HW    E  L +YL QCP++S   +  +       +PH    +    PP       +  N   T+              A    +  YD+       VL   K   L P     V+       K + +                 DV    A++IPEGWWHQV S   TVA+N WF G RP L   P+  M  YY R L+E L+
Sbjct:   42 VDVACTQPSEDVYSGDVRLRQSVELKFGDFVAYFQAKAAGTSHWLMDTENDLHFYLAQCPLLSTSTDVPAV------LPHLLPAMASLRPPILDNIQLTQINLWMTI--------------ASSDTSVHYDAY-ENVLHVLQGTKCVRLYPPSATPVIQAHAIYSKSSNHTTLSLAQTKALPHFIEFDVHANMALYIPEGWWHQVRSEPLTVAMNYWFDGMRPTLVAQPA--MVPYYARVLVEDLV 264          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNV2_9PHAE0.000e+079.03JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LLE0_ECTSI1.570e-19479.49JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A067C9Y8_SAPPC1.280e-1931.52JmjC domain-containing protein n=1 Tax=Saprolegnia... [more]
K3W726_GLOUD2.450e-1729.97JmjC domain-containing protein n=1 Tax=Globisporan... [more]
T0QUU3_SAPDV3.790e-1730.77JmjC domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A836CMX0_9STRA7.290e-1652.38Cupin-like domain-containing protein n=1 Tax=Tribo... [more]
W4GXF1_9STRA1.210e-1429.67JmjC domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A1V9ZL82_9STRA1.240e-1429.63JmjC domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A024U5K3_9STRA1.340e-1429.57JmjC domain-containing protein n=2 Tax=Aphanomyces... [more]
W4GYF0_9STRA3.970e-1429.67JmjC domain-containing protein (Fragment) n=2 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:30446..36703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score175.3
Seed ortholog evalue5e-41
Seed eggNOG ortholog2880.D8LLE0
Model size2002
KEGG koko:K10277
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.tRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
EggNOG OGsKOG2132@1,KOG2132@2759
EC1.14.11.27
Cds size1023
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18679.1prot_Ecto-sp6_S_contig97.18679.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 34529..36585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350594.6558342-UTR-Ecto-sp6_S_contig97:30445..306591682350594.6558342-UTR-Ecto-sp6_S_contig97:30445..30659Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 30446..30659 +
1682350594.668407-UTR-Ecto-sp6_S_contig97:31013..311561682350594.668407-UTR-Ecto-sp6_S_contig97:31013..31156Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 31014..31156 +
1682350594.680374-UTR-Ecto-sp6_S_contig97:31718..318141682350594.680374-UTR-Ecto-sp6_S_contig97:31718..31814Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 31719..31814 +
1682350594.6990812-UTR-Ecto-sp6_S_contig97:32235..324101682350594.6990812-UTR-Ecto-sp6_S_contig97:32235..32410Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 32236..32410 +
1682350594.7129111-UTR-Ecto-sp6_S_contig97:33337..334511682350594.7129111-UTR-Ecto-sp6_S_contig97:33337..33451Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 33338..33451 +
1682350594.7214181-UTR-Ecto-sp6_S_contig97:34108..341881682350594.7214181-UTR-Ecto-sp6_S_contig97:34108..34188Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 34109..34188 +
1682350594.729528-UTR-Ecto-sp6_S_contig97:34489..345281682350594.729528-UTR-Ecto-sp6_S_contig97:34489..34528Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 34490..34528 +
1682350594.784397-UTR-Ecto-sp6_S_contig97:36585..367031682350594.784397-UTR-Ecto-sp6_S_contig97:36585..36703Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig97 36586..36703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350594.7377772-CDS-Ecto-sp6_S_contig97:34528..346161682350594.7377772-CDS-Ecto-sp6_S_contig97:34528..34616Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 34529..34616 +
1682350594.752302-CDS-Ecto-sp6_S_contig97:34969..351541682350594.752302-CDS-Ecto-sp6_S_contig97:34969..35154Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 34970..35154 +
1682350594.7672966-CDS-Ecto-sp6_S_contig97:35835..365851682350594.7672966-CDS-Ecto-sp6_S_contig97:35835..36585Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 35836..36585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18679.1

>prot_Ecto-sp6_S_contig97.18679.1 ID=prot_Ecto-sp6_S_contig97.18679.1|Name=mRNA_Ecto-sp6_S_contig97.18679.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=341bp
MRNYYLRCLIESLLADRLREATAGDEDRRAIMAAADIEVATVTGDHAPKP
AADTSAAAAVEREWSPLRSPTSTVEERNLYLRTIGTDSMKEELPRVAHER
PQDWARLVSGLDPLTAYVVTTQWEAAGGAAGMPEFYAAIFGTGEEMAATG
GGEEDGRNRAQAATAAATAETTETSGTVQLAGSEGIGRAQQPATGAACDG
VIVGAGGVGGFGVNGGTAGQASYGSGVASSGEAAGSVALLAGHVGAGEAA
AAAAAAVATMNTAVWGGDGARCEASLQAQQQQLQANQQQRKVSQQDVEAG
AAGVASQEVSGVALQERLVHLREAFAREQCGVVLNRAVGW*
back to top

mRNA from alignment at Ecto-sp6_S_contig97:30446..36703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18679.1 ID=mRNA_Ecto-sp6_S_contig97.18679.1|Name=mRNA_Ecto-sp6_S_contig97.18679.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6258bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:30446..36703+ (Ectocarpus species6 EcLAC_371)
ATGGCGACCCAACAGACCATTCGTGTCGTGCGCTGGCGGGATGTGGGCTC CGAAGGCGTGATGTCATACATGGCCCCAAAGATGGCACAGAACCACCCGC TTCTTATGTCCGGGCACTGGGCGCACCAGGTTCTCAACAAAGACGCGGCA CAGCGATGGAGCACGTTCACCGGAATCAAATCAGTCTTGGCAGCCCGGGG CCTGGACCAGCTGAGTGAGTGGATTACTGTAGCTGGAGATAAAGCAGACC GTAGATATTTCTACAAGAACCGGCAATATACAGAGCCTCAAATATTCTAG GATGAGCATTGCTCAAGGGGAGGATGGAGTTACCTGCTCTTCCGAGTCGG CTTCTTTCCCTCAATCACTGACTCTATTGAGATCTAGAGTACCTAAGCTT ACCTGAGAGGGGCCGGAGGGGTTGGGGAGGCACTTCTTCCCGCGGATGCC ACCGTTTGTGGTCTTGTGTGTCATCCTCCTGATCAGTATTCAACAGGCTG CGTCACGCCATGCACCACCAAGACGTGTCCCTTAGCTGCGGTCATCTTGC CCCACACCATTCCTGCAGGGGTGGATATTTCCTGCACCAAGAAAGGCGAT TCGTTTCGTGGCGACAAGGCCAGCCGGCAGCAAGTGAACCTGAAGCTCAT GGACATGGTGGAGATAGCCGAGGCCCAAGAGTTGGGACAACCGCACTGGG CATCATCGGACGTGAGATTAGGGGTTTAGACGAATTTGCTTCAGATCAGT TCGAAGTCCCTTCCACGTGCGCAGAAAGCGTCAGCGCGACTTTCTTTCCA CGTACTCGTTGAACTGCATTATGGTCTAAGGGTTGGAGGTGCCTGAGCAG CCGCTGCCCGAGGGTGGTGGCATTTATGCTTGTGCTGGATGCGGGCAGCG TAGGGGCTTGGCGCCTGAAGTCCGCCGGTGAGAGTGTTGTCGACAGGAAC CATCCAGCGATACCACGCTGAGGGCGCTTATAGGACGTATGGGGTCATTC TTCGGTCGCATCACGCACCCTCGTGTCTAAACAGATGGCAACAGAGCCCG CCATCTACGAAGGTCAATGGTACCAAGCACCTCAGGCTGTGAGCAGCTCA ACGCGCGAAGCGTCTATGGCGACACTCTCTTATCTCCCCATGAAGACGCG CATCCTGCGGACCCCGCAGTTTATGTTCCTTCCCGGTATTTCGGCTTTGA CATCCATCGATCACCATCGCTGTTGGGTTGCCTTCAACCCACCCCGCCCT ACTTGACACAAACCTGTACGCAGGAGGTTGGGTTGGACTACTACTTGTGC CAGTGTCCAGTTGTTTCGAGGAGGAGGGAAGCCGGAAGTGCTTAGCGCCA TCGCGGGCGAGTTCCGCACGTGAGTGTTAAGGGACAAATTCCGAAAAATA TCCTAGACCTCGCTAATGACGTCTCATGGTATCAAACGAAGACCAAGTCT TGCGCGTATATGCGCGTGCTTCTTGGTTGGTGGGTTTCCCGAGGCACAAA CCCGAATCGACCTCGAGGGTGTTTGTATTTGCCCTGTTGACTCTCATTCT TGTTGTTATTGAAGCTGTTTCTGGTGTTCCTAATCTCTCTTTTCGTGTTG GTGCCACTGAGGTTTTCTCAGTGTATTCACGATACACCGGAAGACCTGAG TGCACTACCCAATCGCCTCTGGGATGTTTTGCACTCTCTCTCCGGTCGTC TGTTGTCTTTCTCCTTTGCCGTCTCTTTTGACACTCCTAATGCGCACGGT AAAACTCAACAAGCACCCGTACCATTCAAACCAACACCAGGCCTTCTTGT GTCTCGGAGGAAGACCTCCTCCAGATCAACCTGTGGATGGGGGCAGTGGA GACAACGACTAACCTACACTACGACGCCAACCACAACCTTCTCTTCGTTC TCAAGGGGAGCAAGCGGGTCGCTCTGCTGCCGCCGGATATGACAGCCGGT GTTCACGCCATGCCGGTGAGAGGCGAAGACAACTTTTTGTCTTGGTCAGA GTCTTGATTCAGATTTAGGGATCGGACTAAGCGGTTGCCTAGAACTGGAG GGCATGAGTGGAGTAGAGACGGCTCTGCTGGGGTAAAGGCCAGACATGCG CAAGTGAGAGACATTTCTAAGGTTAATGGTTCAAAGCTTAGGTTAGACTC GATAATTTGTTGTACCGCAGTTCTCACCCCGCCAAACAAGTATGAGCCCG GTTTCTTTGCAACGAGAAATGCGGCTGTCCAACTGAACGATGTTTCTAAC TAACGATGTTTGTACAAATGTTTCCAACTATACGATGGTAGCAATAGTGC TCCCCGCGTTATCCCGAAATAGGCGTCGATAGGTCGGCTCACGGAGGCCT GGGTGTGTGTGTGAGCTTGCGCCACCCACGTAGACATGAGGGTCAGCCTA CAAGAGTAGAATACGATGGAGAGGGTGCCGTGAATGCCCACCATGTGAGA GAACAGGGGAGGTCTCGTTTACTTGCGTAAATTGACCATGTCAACAGTCT TTGCCTTCGAACAGTGTTGTGCAGGCGTTCGGAATAACGTCTATTTTGAT GTTTCTAGGGGAGCCGGGGACGTAACGTGATTGGCTGCTTGGCCCCCTTT ATTGGTTGGTCGGTTATTTCGATGAGTAATCGCTGCGGGACCAAGAGAAC AGATGGCGAAGTGGTGTGGAGTGAGAGCCAAAGAGAATTGTGTCCGACTA GAGTCTGCGTTTGGCGGATACCGATTGTTGGGGCTCAATAACATCACCCA GTGGTCATAGAGATCAAGACTTGGACTCGTCGCAGGACGCCAGTCACTTA CACATGTGTATCGTACAAAGATTTTGGCTGGGCCTTTCACACGTTGGCTG GATGACACACAAGTCGTGCGTACTGTGCCTTTTTTCACCCAGGTGTTCTC TGAGTCCGCAAATCACCCGGGCTACAGCCAGCCGAAACGGCCGCAGTTGT CGACGGCGACGAGGCCGCGCGGAAGGGAGCCGTATACGCCGATGTGGCCG AAGGGGGTATGTAAACGAAGTTGCAGGCCAGCAACGAAATTCACCTTGGC CTGATCTGAGAAAAGCAGTCGTGTTTGTGGGTGCATAAGCTGGGCGTAGT GCGGAATGCCAGCGGAATATAGAGATGATACGTGTGCAATTACGTTGTTT TGAAAGACACTGTATTTTCCTCTCTTGCTGCTGGCTGGCCCCCGTCCAAC AAGAGGCGGTAGTCCGGGTCTTCTTGATGTGCCCGAGACTAGAATGGCGT CTGCGCGTTGATTGTCGTATCACCTGGCGACCGGCACCTGGACACCGCTG GCAAACACGGATTTGCGAGATGTAGCACGAACAAGCGCTTCCTAACTTCA ATCAACATACACGGGTCTTCGAGGTTACCCGCCAAACCAACTGGGAGACC GATTAGTCATGCCAGACCTTTCTCCCAGACGCTTGGTTGCCATGCTCGCT TTTCACGTCCCCCAATCTACGCCGCACGAGCCCTCAGGGTATGTATAAGG GTCATCTACCTTTCGCCGTTCCCACCCAATACCTAGCAGGCAAACACACA GTAGTTTGGCCGGTGCTGGAGAGACCGTCATCGCCCTTTATTACCTCTGT CGTTTTCTCCAAGTGCATGTACTCGCGTTCATGGCTCTTTCCACTGTTCA CACCACATGCCAGAGGCGATCTTCATTCCGGAGGGGTGGTGGCACCAGGT GTTTTCGTCTCGCGGCACTGTCGCCGTCAACGTCTGGTTCAAGGTGATTG TCGTGGAAGTTTGGCACGAGGCGCGTGGTTCTAGGATACTTATCGAAGCA GCCGCGACAAATTTGTATGCGTGATTTTTAGTCTCCAAAAAGAAACGCGT GAGGGGCGACCTCCGGCCTTACGTGTTTTTGTTGCAACCAGCGGTGTTCA AAGGAGAGGCCAGAGCTGCGAATAGAGGTAGAAGGGTTCGGCACATGCGT GATTTCGATGGTGACCCTGAGAACCGTCGGCAGTGTATTTATTTGCGCGC CGGGCTGTGTCCGTTCTCCTCCTCCACCGTCTCTGTTTCGACAGGGTGCG CGACCGGCGCTGTGTGAAGGCCCCTCTAAACATATGAGGAATTACTACCT GAGGTGCCTAATCGAGTCTCTTCTTGCCGACCGGCTACGCGAGGCTACTG CTGGAGACGAAGATAGAAGAGGTAATCGCACTTGGCATGTCGTCGCACCA AAATTGCTGGCGCAATGTCTCCCGCGCCGCAGTACACTTAATCAGTTTCG CGTTTCGCGCCGCAAAGCAGTATTGTAGATGTCAAGGGCACTACAGAAGC ACCGCCATACAACGTGGTTGGTGTTCTCGTTGTTGGCGCAGTTGATGTTG GTGCCGTTGCCGCTGTTGTTGCTGCTCCTGTTGCTTTGAAGCGGCACTGC ACAGCATGCCGTCGCTTCTCGTCGAAACCTCGCGGCAAGTGATCGATCAC GTGCGTGGCCCCTTACATCGACTGCACCATTAACACCCTTCGCGCGACTG CGCATACATAACCGAACCCTGCAGCAATCATGGCCGCGGCCGACATCGAG GTGGCAACCGTGACGGGCGACCATGCGCCAAAGCCCGCCGCTGACACATC GGCTGCGGCGGCGGTAGAGCGTGAGTGGTCTCCCCTCCGCAGCCCAACCT CCACAGTCGAAGAGCGCAACTTGTACCTCAGAACCATTGGGACGGACAGT ATGAAGGAGGTGAACAATATTGAGGGAAAATTTAGCCACACATGCGAATT TGCGCTTGGAAGGAATGCATCTTGGTAGTGTTGCTTTTCGTGTTGACATG GAATATCGAGCACGGCGGTCGTGACTTACCGGAAAGGAGGTCAGAACGGG ACAGAAATTCCAACGAAGATGACAAGAGAGAGGAAAGCCTCAACTGCAAG GGTGGCAAGGACACATTGGCAACGAACAGAGAACGGACGCGGCGGACCTA AACGCTGGTTGCAGTATGGTATTGTATACTGGGAAATCTTCGGTTCTTGT GTAATTGGGCAGAAGTTAGTGATAGTTGCGGAGAAAACAAAGTCCATCGG CGTCAACCGGCTCCCGCTTTTTCGTTTGTCGCTACGACCCTTGCCTCTGT AACAATATTCTCCGGCAGGTTGCGCTTGACTACCGGGACAAACCCGCTCG GTTCAAGCAATCTGCATCATACCATTTTCGTTTTGACATTTCCCTTGCTA TAAAAGCGCCCGGGCTGACCGAGCCCGCGGCTGGGCGATGTAGATGGAAA CACTTGACGCGCGTAGTAGACTTGGCGAAACAAGATGTTGACCATTTTAC GTTTCTCCGGTGTTGTTTATAACTTCCAACTCTTGTCTTGCCGGCCGTGT TTGCCGCTGCCTACACCTTCATCTCGACACGGCACGAAAGGAGCTCCCTA GAGTAGCCCACGAGCGCCCGCAGGACTGGGCGCGGCTTGTTAGCGGCCTA GATCCCCTCACCGCGTACGTGGTCACCACCCAGTGGGAGGCAGCAGGGGG TGCCGCTGGCATGCCGGAATTCTACGCTGCCATTTTTGGGACTGGGGAGG AGATGGCCGCGACAGGTGGCGGGGAGGAGGATGGTCGAAATCGGGCACAG GCGGCGACGGCGGCGGCAACAGCAGAGACAACGGAGACGAGCGGGACCGT TCAGCTCGCTGGGAGTGAGGGGATTGGCAGAGCGCAGCAGCCTGCTACTG GTGCTGCTTGTGACGGCGTAATTGTCGGTGCCGGTGGTGTGGGTGGGTTT GGTGTTAATGGCGGTACCGCCGGTCAGGCTAGTTATGGCAGCGGTGTGGC TAGTAGCGGCGAGGCAGCTGGCAGCGTAGCGTTATTAGCGGGGCACGTGG GAGCGGGAGAAGCAGCAGCAGCGGCAGCAGCAGCGGTAGCGACGATGAAC ACCGCGGTTTGGGGAGGAGACGGTGCCCGTTGTGAAGCTTCCCTGCAAGC ACAACAGCAACAACTGCAAGCGAATCAGCAGCAGCGGAAAGTTTCTCAAC AAGATGTAGAAGCTGGTGCTGCTGGTGTTGCGTCGCAAGAGGTTAGCGGT GTTGCTCTGCAGGAGCGGCTGGTGCATTTGAGGGAGGCGTTCGCGAGGGA ACAGTGTGGCGTCGTGTTGAACCGGGCGGTGGGGTGGTGAGAACATTACC CGTAGACAAATCTGTCAATGGTTTGGAGAAAACCCCCTCGGAGAGCAGTT CGCCTTCAATTTTCTGGAAACTAGTCCTTTCACGAAGGATATGCTTTGAG ACACGGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:30446..36703+

>mRNA_Ecto-sp6_S_contig97.18679.1 ID=mRNA_Ecto-sp6_S_contig97.18679.1|Name=mRNA_Ecto-sp6_S_contig97.18679.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:30446..36703+ (Ectocarpus species6 EcLAC_371)
ATGAGGAATTACTACCTGAGGTGCCTAATCGAGTCTCTTCTTGCCGACCG
GCTACGCGAGGCTACTGCTGGAGACGAAGATAGAAGAGCAATCATGGCCG
CGGCCGACATCGAGGTGGCAACCGTGACGGGCGACCATGCGCCAAAGCCC
GCCGCTGACACATCGGCTGCGGCGGCGGTAGAGCGTGAGTGGTCTCCCCT
CCGCAGCCCAACCTCCACAGTCGAAGAGCGCAACTTGTACCTCAGAACCA
TTGGGACGGACAGTATGAAGGAGGAGCTCCCTAGAGTAGCCCACGAGCGC
CCGCAGGACTGGGCGCGGCTTGTTAGCGGCCTAGATCCCCTCACCGCGTA
CGTGGTCACCACCCAGTGGGAGGCAGCAGGGGGTGCCGCTGGCATGCCGG
AATTCTACGCTGCCATTTTTGGGACTGGGGAGGAGATGGCCGCGACAGGT
GGCGGGGAGGAGGATGGTCGAAATCGGGCACAGGCGGCGACGGCGGCGGC
AACAGCAGAGACAACGGAGACGAGCGGGACCGTTCAGCTCGCTGGGAGTG
AGGGGATTGGCAGAGCGCAGCAGCCTGCTACTGGTGCTGCTTGTGACGGC
GTAATTGTCGGTGCCGGTGGTGTGGGTGGGTTTGGTGTTAATGGCGGTAC
CGCCGGTCAGGCTAGTTATGGCAGCGGTGTGGCTAGTAGCGGCGAGGCAG
CTGGCAGCGTAGCGTTATTAGCGGGGCACGTGGGAGCGGGAGAAGCAGCA
GCAGCGGCAGCAGCAGCGGTAGCGACGATGAACACCGCGGTTTGGGGAGG
AGACGGTGCCCGTTGTGAAGCTTCCCTGCAAGCACAACAGCAACAACTGC
AAGCGAATCAGCAGCAGCGGAAAGTTTCTCAACAAGATGTAGAAGCTGGT
GCTGCTGGTGTTGCGTCGCAAGAGGTTAGCGGTGTTGCTCTGCAGGAGCG
GCTGGTGCATTTGAGGGAGGCGTTCGCGAGGGAACAGTGTGGCGTCGTGT
TGAACCGGGCGGTGGGGTGGTGA
back to top