mRNA_Ecto-sp6_S_contig96.18672.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18672.1
Unique NamemRNA_Ecto-sp6_S_contig96.18672.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig96.18672.1 vs. uniprot
Match: D7FJS5_ECTSI (Glycosyltransferase, family GT4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS5_ECTSI)

HSP 1 Score: 1377 bits (3564), Expect = 0.000e+0
Identity = 701/720 (97.36%), Postives = 707/720 (98.19%), Query Frame = 1
Query:   67 MFLGSEVRGQQVEPDKDIFTSSGELMKGRSHPREEGVEVTERMPSVFRGGQTDSVEQQLLVGATDNLVAESEKPLSTPLPTKNDTAALWITRPLNDTILPLGDIFLTFETHGFTPAVETPIEANLQVLMPQNGDTPFLLEKGNSMILSSDMPCTQQVTLYATVRGERVSASVLFSTVLGREAILSARTPLPSGAAWGRPRLLVCPPLVREHEEGDNSASLPKGDASTWQTHEGGTGVMVGKGGVYCSSGSAESQGCDSGEETTEGLPRPISLVFVGSLSLDGQKHVWLQQLEQFSRVRFAPKFLTFEEQEGTNGSTAGAWKSNAAESFKQRLSRAGVPLVTVRLPQVNSSWIHDSIGGEVAPTHTLKEMAFKAVLESIHRAGGNPHLMSPPWTGEIFQHIADAVESASPDVLVIANGKTLGDDLLTKAARWAMRDNSGFKIVMDFPNIGPALGVDVDVIATPSHYVARHRDTKALAAAAGAEVVVIPPGVPVAPTLSQTKNLLADELLSLDRTSGELRRERVCDSGMLNKLGCCDPACHVVGFAGRLAPEKGPGLFMVVAEALAKLIPSAVFVVVGDGPLRTSLEAAAERMGMASRMHFAGWADEGDLERLLAGMTLLFNPSLSQSETFSIVNVQAMSVGTPVAAFGIGGMLEYGNLALLDDTDPGAISTAMAGLLLDRPRLEALARRGRAHVSSAFRADVALDRWAELYQSLGGGMMCA 2226
            MFL S VRGQQVEPDKDIFTSSGELMKGRSH REEGVEVTERMPSVFRGGQ DSVEQ+LLVGATDNLVAESEKPLSTPLPTKNDTAALWITRPLNDTILPLGDIFLTFETHGFTPAVETPIE    VLMPQNGDTPFLLEKGNSMILSSDMPCTQQVTLYATVRGERVSASVLFSTVLGREAILSARTPLPSGAAWGRPRL+VCPPLVREHEEG NSASLPKGD STWQTHEGGTGVMVGKGGVYCSSGSAESQGCDSGEETTEGLPRPISLVFVGSLSLDGQKHVWLQQLEQFSRVRFAPKFLTFEEQEG NGSTAGAWKSNAAESFKQRLSRAGVPLVTVRLPQVNSSWIHDSIGG+VAPTHTLKEMAFKAVLESIHRAGGNPHLMSPPWTGEIFQHIADAVESASPDVLVIANGKTLGDDLLTKAARWAMRDNSGFKIVMDFPNIGPALGVDVDVIATPSHYVARHRDTKALAAAAGAEVVVIPPGVPVAPTLSQ KNLLADELLSLDRTSGELRRERVCDSGMLNKLGCCDPACHVVGFAGRLAPEKGPGLFMVVAEA+AKLIPSAVFVVVGDGPLRTSLEAAAERMGMASRMHFAGWADEGDLERLLAGMTLLFNPSLSQSETFSIVNVQAMSVGTPVAAFGIGGMLEYGNLALLDDTDPGAISTAMAGLLLDRPRLEALA+RGR HVSSAFRADVALDRWAELYQSLGGGMMC+
Sbjct:   21 MFLDSGVRGQQVEPDKDIFTSSGELMKGRSHHREEGVEVTERMPSVFRGGQIDSVEQKLLVGATDNLVAESEKPLSTPLPTKNDTAALWITRPLNDTILPLGDIFLTFETHGFTPAVETPIE----VLMPQNGDTPFLLEKGNSMILSSDMPCTQQVTLYATVRGERVSASVLFSTVLGREAILSARTPLPSGAAWGRPRLMVCPPLVREHEEGYNSASLPKGDTSTWQTHEGGTGVMVGKGGVYCSSGSAESQGCDSGEETTEGLPRPISLVFVGSLSLDGQKHVWLQQLEQFSRVRFAPKFLTFEEQEGRNGSTAGAWKSNAAESFKQRLSRAGVPLVTVRLPQVNSSWIHDSIGGQVAPTHTLKEMAFKAVLESIHRAGGNPHLMSPPWTGEIFQHIADAVESASPDVLVIANGKTLGDDLLTKAARWAMRDNSGFKIVMDFPNIGPALGVDVDVIATPSHYVARHRDTKALAAAAGAEVVVIPPGVPVAPTLSQAKNLLADELLSLDRTSGELRRERVCDSGMLNKLGCCDPACHVVGFAGRLAPEKGPGLFMVVAEAVAKLIPSAVFVVVGDGPLRTSLEAAAERMGMASRMHFAGWADEGDLERLLAGMTLLFNPSLSQSETFSIVNVQAMSVGTPVAAFGIGGMLEYGNLALLDDTDPGAISTAMAGLLLDRPRLEALAKRGRVHVSSAFRADVALDRWAELYQSLGGGMMCS 736          
BLAST of mRNA_Ecto-sp6_S_contig96.18672.1 vs. uniprot
Match: A0A6H5K6W1_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W1_9PHAE)

HSP 1 Score: 1006 bits (2601), Expect = 0.000e+0
Identity = 521/630 (82.70%), Postives = 548/630 (86.98%), Query Frame = 1
Query:   67 MFLGSEVRGQQVEPDKDIFTSSGELMKGRSHPREEGVEVTERMPSVFRGGQTDSVEQQLLVGATDNLVAESEKPLSTPLPTKNDTAALWITRPLNDTILPLGDIFLTFETHGFTPAVETPIEANLQ---------VLMPQNGDTPFLLEKGNSMILSSDMPCTQQVTLYATVRGERVSASVLFSTVLGREAILSARTPLPSGAAWGRPRLLVCPPLVREHEEGDNSASLPKGDASTWQTHEGGTGVMVGKGGVYCSSGSAESQGCDSGEETTEGLPRPISLVFVGSLSLDGQKHVWLQQLEQFSRVRFAPKFLTFEEQEGTNGSTAGAWKSNAAESFKQRLSRAGVPLVTVRLPQVNSSWIHDSIGGEVAPTHTLKEMAFKAVLESIHRAGGNPHLMSPPWTGEIFQHIADAVESASPDVLVIANGKTLGDDLLTKAARWAMRDNSGFKIVMDFPNIGPALGVDVDVIATPSHYVARHRDTKALAAAAGAEVVVIPPGVPVAPTLSQTKNLLADELLSLDRTSGELRRERVCDSGMLNKLGCCDPACHV---------------------------VGFAGRLAPEKGPGLFMVVAEALAKLIPSAVFVVVGDGPLRTSLEAAAERMGMA 1848
            MFL S VRGQ VEPDKDIFT SGELMKG SH REE  E TER+ SVFR  QT SVEQQLLVGATDNLVAE EKPL TPLPTKNDTAA+WITRPLNDTILPLGD+FLTFETHGFTPAVETPIEA++          VL  QNGDTPFLLEKGNS+ILSSD+PCTQQVTLYATVRGERVSASVLFSTVLGREAILSARTPLPSG  WGRPR +VCPPL+REH++GD  ASLPKGD STWQTHEGGT VMVGKGG+ CSSGSAESQ CDSGEE  EGLPRPISLV+VGSLSLDGQKH+WLQQLEQ  RVRFA KFLTFEEQEGT GSTAGAWK+NAAESFKQRLSRAGVPLVTVRLPQVNSSWIHD+IG + APT+TLKEMAF+ VLES HRAGGNPH+MSP WTGEIFQHIADAV+SASPDVLV+ANGKTLGDD+LTKAARWAMRDNSGFKIVMDFPNIGP+LGVDVDVIATPSHYVARH DT+ALAAAAGAEVVVIPPGVPVA  LSQ K LLADELLS  RTSGELRRE VCDSGMLNKLGCCDPACHV                           VGFAGRLAPEKGPGLFMVVAEALAKLIPSAVF+VVGDGPLRTSLEAAAERMG+A
Sbjct:    1 MFLDSGVRGQPVEPDKDIFTPSGELMKGPSHHREEDTEATERIASVFRARQTGSVEQQLLVGATDNLVAEGEKPLPTPLPTKNDTAAIWITRPLNDTILPLGDVFLTFETHGFTPAVETPIEASMSRGATFRFSSVLTSQNGDTPFLLEKGNSIILSSDIPCTQQVTLYATVRGERVSASVLFSTVLGREAILSARTPLPSGVVWGRPRSMVCPPLIREHKKGDIFASLPKGDKSTWQTHEGGTDVMVGKGGLCCSSGSAESQRCDSGEEAIEGLPRPISLVYVGSLSLDGQKHIWLQQLEQLPRVRFAAKFLTFEEQEGTRGSTAGAWKTNAAESFKQRLSRAGVPLVTVRLPQVNSSWIHDTIGRQ-APTNTLKEMAFRTVLESFHRAGGNPHVMSPQWTGEIFQHIADAVQSASPDVLVMANGKTLGDDVLTKAARWAMRDNSGFKIVMDFPNIGPSLGVDVDVIATPSHYVARHPDTQALAAAAGAEVVVIPPGVPVASPLSQAKTLLADELLSPGRTSGELRRECVCDSGMLNKLGCCDPACHVRKYETVLDKLVHAAASAVLAMLWPIQVVGFAGRLAPEKGPGLFMVVAEALAKLIPSAVFIVVGDGPLRTSLEAAAERMGIA 629          
BLAST of mRNA_Ecto-sp6_S_contig96.18672.1 vs. uniprot
Match: A0A6H5K2P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P9_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.010e-63
Identity = 113/126 (89.68%), Postives = 117/126 (92.86%), Query Frame = 1
Query: 1855 MHFAGWADEGDLERLLAGMTLLFNPSLSQSETFSIVNVQAMSVGTPVAAFGIGGMLEYGNLALLDDTDPGAISTAMAGLLLDRPRLEALARRGRAHVSSAFRADVALDRWAELYQSL---GGGMMC 2223
            MHFAGWADEG+LE LLAGMTLLFNPSL QSETFSIVN+QAMS GTPVAAFGIGGMLEYGNLALLDDTDPGAISTA+AG+LLDRPRLEALA RGRAHVSSAFRADVALDRWAELYQSL     GMMC
Sbjct:    1 MHFAGWADEGNLECLLAGMTLLFNPSLFQSETFSIVNIQAMSAGTPVAAFGIGGMLEYGNLALLDDTDPGAISTAIAGILLDRPRLEALAERGRAHVSSAFRADVALDRWAELYQSLDVSNRGMMC 126          
BLAST of mRNA_Ecto-sp6_S_contig96.18672.1 vs. uniprot
Match: A0A2R5G895_9STRA (GDP-mannose-dependent alpha-mannosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G895_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.920e-25
Identity = 86/261 (32.95%), Postives = 129/261 (49.43%), Query Frame = 1
Query: 1249 EIFQHIADAVESASPDVLVIANGKTLGDDLLTKAARWAMRDNSGFKIVMDFPNIGPALGVDVDVIATPSHYVARHRDTKALAAAAGAEVVVIPPGVPVAPTLSQTKNLLADELLSLDRTSGELRRERVCDSGMLNKLGCCDPACHVVGFAGRLAPEKGPGLFMVVAEALAKLIPSAV-FVVVGDGPLRTSLEAAAERMGMASRMHFAGWADEGDLERLLAGMTLLFNPSLSQSETFSIVNVQAMSVGTPVAAFGIGGMLEY 2028
            ++   +  A E A  D+L  AN K   D LL + AR A     G +I+MD PN  P   +  D++  PS    R    K LA   GA++V+ P                            +L R  +  +  L       P C V+GF  RL PEK  GLF+   + + KL  +A  FV+VGDG + +SL   A ++G+  ++HF G      L  ++A M ++ NPS S++ETF IVN++AM++G P+ +FG GG+ +Y
Sbjct:   46 DLIHRMVGAFEGA--DILFFANSKEFTDVLLVETARLA---GIG-RIIMDLPNTDPHPEISPDIVVAPSRATLRETSVKRLA---GAKMVIYP--------------------------GADLDRFAIAQNVRL------PPRC-VIGFVARLEPEKSAGLFI---DMVTKLHTTACDFVIVGDGSMFSSLRMLARKLGVQHKIHFTGMLHGDALPFMMARMYVIVNPSTSETETFCIVNIEAMALGIPLVSFGAGGVSDY 261          
BLAST of mRNA_Ecto-sp6_S_contig96.18672.1 vs. uniprot
Match: A0A7S2WD15_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WD15_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.930e-19
Identity = 63/176 (35.80%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 1687 VGFAGRLAPEKGPGLFMVVAEALAKLIPSAVFVVVGDGPLRTSLEAAAERMGMASRMHFAGWADEGDLERLLAGMTLLFNPSLSQSETFSIVNVQAMSVGTPVAAFGIGGMLEY------GNLALLDDTDPGAISTAMAGLLLDRPRLEALARRGRAHVSSAFRADVALDRWAELY 2196
            VGF  RL PEK PGLF+ +A+ L        FVV+GDG LR  LE  A  +G+  ++ FAG     +L   L  + ++ NPS+ QSETF IVN++AM++G PV +FG GG+++Y      G +A      P  I + + G+     +++A+ R+        F  +  ++R+ +LY
Sbjct:   29 VGFVARLEPEKSPGLFLHLAKRLGS--DRYDFVVIGDGSLRERLEDLARGLGLR-KVTFAGALYGDELPAALGELDIVVNPSMKQSETFCIVNIEAMAMGVPVVSFGAGGVVDYLVHGVNGAIA-----KPLGIDSLVDGVRFVETKMDAM-RKAAIKTCDRFHVERMVERYFDLY 195          
BLAST of mRNA_Ecto-sp6_S_contig96.18672.1 vs. uniprot
Match: UPI0015D8FDED (glycosyltransferase n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI0015D8FDED)

HSP 1 Score: 96.7 bits (239), Expect = 1.020e-17
Identity = 63/177 (35.59%), Postives = 98/177 (55.37%), Query Frame = 1
Query: 1681 HVVGFAGRLAPEKGPGLFMVVAEALAKLIPSAVFVVVGDGPLRTSLEAAAERMGMASRMHFAGWADEGDLERLLAGMTLLFNPSLSQSETFSIVNVQAMSVGTPVAAFGIGG---MLEYGNLALL-DDTDPGAISTAMAGLLLDRPRLEALARRGRAHVSSAFRADVALDRWAELYQ 2199
             VVG  GRL+ EKG  +F+  A+ +    P   FV VG+GP R   E AA+R+G+A+ + FAG     D+  + A + +L  PSL ++    ++  +AM+   PV A  +G    ++E G   LL D  +PG ++ A+  LL D    ++LAR+G  HV   F A+    R++ELY+
Sbjct:  190 RVVGCVGRLSAEKGGEVFLKAAQLVKASEPDVQFVWVGEGPCRREWEQAADRLGVAADVWFAG--TRTDMPGVYASLDMLVLPSLEEAMPMCLL--EAMAAARPVVATRVGAVPRLIENGRTGLLVDPNEPGPLADAILRLLRDPEWAQSLARKGAEHVGRQFSAEALATRYSELYR 362          
BLAST of mRNA_Ecto-sp6_S_contig96.18672.1 vs. uniprot
Match: A0A519IB47_9BURK (Glycosyltransferase n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519IB47_9BURK)

HSP 1 Score: 94.7 bits (234), Expect = 4.750e-17
Identity = 64/178 (35.96%), Postives = 95/178 (53.37%), Query Frame = 1
Query: 1684 VVGFAGRLAPEKGPGLFMVVAEALAKLIPSAVFVVVGDGPLRTSLEAAAERMGMASRMHFAGWADEGDLERLLAGMTLLFNPSLSQSETFSIVNVQAMSVGTPVAAFGIGG---MLEYGNLA-LLDDTDPGAISTAMAGLLLDRPRLEALARRGRAHVSSAFRADVALDRWAELYQSL 2205
            ++GF GRL+PEK P +F+  A+AL    P A  V+VGDGP++ SL A AE++G+   +HF G  D  D+  + + + ++   S S SE   +  ++AM+ G PV A  +GG   ++E+G    L    D G I+   A LL D    EA+ RR R  V   F     + R  +L   L
Sbjct:  196 LLGFVGRLSPEKAPDVFLRAAQALRTRCPEARAVMVGDGPMQQSLMAQAEQLGLTGWLHFLGLRD--DMPAIFSELDVV--ASTSHSEAMPLALMEAMASGLPVVATRVGGVPDLVEHGRTGWLAAPDDSGDIAARCALLLADAALREAMGRRSRQRVVEHFDLGECVQRMGKLLDRL 369          
BLAST of mRNA_Ecto-sp6_S_contig96.18672.1 vs. uniprot
Match: A0A847DY47_9BURK (Glycosyltransferase n=1 Tax=Limnobacter sp. TaxID=2003368 RepID=A0A847DY47_9BURK)

HSP 1 Score: 92.0 bits (227), Expect = 4.820e-17
Identity = 61/180 (33.89%), Postives = 96/180 (53.33%), Query Frame = 1
Query: 1684 VVGFAGRLAPEKGPGLFMVVAEALAKLIPSAVFVVVGDGPLRTSLEAAAERMGMASRMHFAGWADEGDLERLLAGMTLLFNPSLSQSETFSIVNVQAMSVGTPVAAFGIGGMLEY------GNLALLDDTDPGAISTAMAGLLLDRPRLEALARRGRAHVSSAFRADVALDRWAELYQSL 2205
            +VGF GRL+PEKGP LF+  A+ + +  P A FVV+GDGP R ++EA  +R+G+  R+H AG   +  +  L   + LL   SLS++   +++  +AM+   PV A  +GG+ +       G+L    D D   ++  +A LL D      + R+GR  +   F  D ++     L Q L
Sbjct:   28 LVGFVGRLSPEKGPELFVRCAQRVLERQPQAHFVVIGDGPQRATVEARIDRLGLRGRVHLAGM--QASMPTLYPQLDLLVCSSLSEAMPLAVM--EAMACSLPVVATAVGGVPDLVVQGLTGSLVGHGDVD--GLANEVAALLADPATRREMGRQGRRRIQQRFALDHSVGAIGALLQRL 201          
BLAST of mRNA_Ecto-sp6_S_contig96.18672.1 vs. uniprot
Match: A0A2V7D6Z2_9BACT (Glycos_transf_1 domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7D6Z2_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 8.300e-17
Identity = 64/166 (38.55%), Postives = 88/166 (53.01%), Query Frame = 1
Query: 1672 PACHVVGFAGRLAPEKGPGLFMVVAEALAKLIPSAVFVVVGDGPLRTSLEAAAERMGMASRMHFAGWADEGDLERLLAGMTLLFNPSLSQSETFSIVNVQAMSVGTPVAAFGIGGMLEY---GNLALL-DDTDPGAISTAMAGLLLDRPRLEALARRGRAHVSSAF 2157
            P+  V    GR  PEKG    +  A  + +  P   +V+VGDG LR+ LEA A R+G+ SR+HF GW D  D+  +LA   +   PS  QSE F  V V+AM++G  + A  +GG+ +    G   LL    DP A++ A+  LL D  R   L   GRA   S+F
Sbjct:   48 PSAPVALSIGRHVPEKGYRHLVDAAALVERARPGVHWVLVGDGELRSELEARARRLGLESRVHFTGWRD--DVADVLALSDVFVLPS--QSEGFGRVLVEAMAMGRAIVATAVGGVPDVVLAGRTGLLVQPADPVALADAVRALLDDPARAARLGAAGRARAESSF 209          
BLAST of mRNA_Ecto-sp6_S_contig96.18672.1 vs. uniprot
Match: A0A7C5AH31_9BACT (Glycosyltransferase family 1 protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7C5AH31_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-16
Identity = 64/185 (34.59%), Postives = 98/185 (52.97%), Query Frame = 1
Query: 1669 DPACHVVGFAGRLAPEKGPGLFMVVAEALAKLIPSAVFVVVGDGPLRTSLEAAAERMGMASRMHFAGWADEGDLERLLAGMTLLFNPSLSQSETFSIVNVQAMSVGTPVAAFGIGGMLE------YGNLALLDDTDPGAISTAMAGLLLDRPRLEALARRGRAHVSSAFRADVALDRWAELYQSL 2205
            D    VVGF GRL P+KG    +  A A+    P+A FV+VGDGPL+ +L   A R+G++    F G  +  D+  +LA  T+L  PSL +S  ++I++  AM++G PV A  +GG+ E      +G   L+   DP  +++A+  LL D  R   +A   R  V + FR    +    +LY  +
Sbjct:  202 DEPAEVVGFVGRLVPQKGVEYLLRSAPAILSEFPAARFVIVGDGPLKENLRLEAARLGISDHCAFLGTRE--DVPAILATFTILALPSLWESAPYAILD--AMALGVPVVASNVGGIPEIIPSDDFG--LLVPPEDPHRLASAVRSLLRDPRRRRQIADATRQRVRNEFRLSGMIAALHQLYAGI 380          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJS5_ECTSI0.000e+097.36Glycosyltransferase, family GT4 n=1 Tax=Ectocarpus... [more]
A0A6H5K6W1_9PHAE0.000e+082.70GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5K2P9_9PHAE1.010e-6389.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5G895_9STRA1.920e-2532.95GDP-mannose-dependent alpha-mannosyltransferase n=... [more]
A0A7S2WD15_9STRA2.930e-1935.80Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
UPI0015D8FDED1.020e-1735.59glycosyltransferase n=1 Tax=Nevskia soli TaxID=418... [more]
A0A519IB47_9BURK4.750e-1735.96Glycosyltransferase n=1 Tax=Rubrivivax sp. TaxID=5... [more]
A0A847DY47_9BURK4.820e-1733.89Glycosyltransferase n=1 Tax=Limnobacter sp. TaxID=... [more]
A0A2V7D6Z2_9BACT8.300e-1738.55Glycos_transf_1 domain-containing protein n=1 Tax=... [more]
A0A7C5AH31_9BACT1.500e-1634.59Glycosyltransferase family 1 protein n=1 Tax=Lenti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:616796..620663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1385.9
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FJS5
Model size2256
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.Glycosyl transferases group 1
EggNOG OGs2E46J@1,2SB4R@2759
Cds size2256
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350593.9662316-CDS-Ecto-sp6_S_contig96:616795..6172011682350593.9662316-CDS-Ecto-sp6_S_contig96:616795..617201Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 616796..617201 -
1682350593.9778922-CDS-Ecto-sp6_S_contig96:617671..6178381682350593.9778922-CDS-Ecto-sp6_S_contig96:617671..617838Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 617672..617838 -
1682350593.9874275-CDS-Ecto-sp6_S_contig96:618397..6196441682350593.9874275-CDS-Ecto-sp6_S_contig96:618397..619644Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 618398..619644 -
1682350593.9978478-CDS-Ecto-sp6_S_contig96:619947..6203171682350593.9978478-CDS-Ecto-sp6_S_contig96:619947..620317Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 619948..620317 -
1682350594.0061374-CDS-Ecto-sp6_S_contig96:620597..6206631682350594.0061374-CDS-Ecto-sp6_S_contig96:620597..620663Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 620598..620663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18672.1prot_Ecto-sp6_S_contig96.18672.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 616796..620663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18672.1

>prot_Ecto-sp6_S_contig96.18672.1 ID=prot_Ecto-sp6_S_contig96.18672.1|Name=mRNA_Ecto-sp6_S_contig96.18672.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=752bp
MPLWGASAVCCCTQAIGLLSAAMFLGSEVRGQQVEPDKDIFTSSGELMKG
RSHPREEGVEVTERMPSVFRGGQTDSVEQQLLVGATDNLVAESEKPLSTP
LPTKNDTAALWITRPLNDTILPLGDIFLTFETHGFTPAVETPIEANLQVL
MPQNGDTPFLLEKGNSMILSSDMPCTQQVTLYATVRGERVSASVLFSTVL
GREAILSARTPLPSGAAWGRPRLLVCPPLVREHEEGDNSASLPKGDASTW
QTHEGGTGVMVGKGGVYCSSGSAESQGCDSGEETTEGLPRPISLVFVGSL
SLDGQKHVWLQQLEQFSRVRFAPKFLTFEEQEGTNGSTAGAWKSNAAESF
KQRLSRAGVPLVTVRLPQVNSSWIHDSIGGEVAPTHTLKEMAFKAVLESI
HRAGGNPHLMSPPWTGEIFQHIADAVESASPDVLVIANGKTLGDDLLTKA
ARWAMRDNSGFKIVMDFPNIGPALGVDVDVIATPSHYVARHRDTKALAAA
AGAEVVVIPPGVPVAPTLSQTKNLLADELLSLDRTSGELRRERVCDSGML
NKLGCCDPACHVVGFAGRLAPEKGPGLFMVVAEALAKLIPSAVFVVVGDG
PLRTSLEAAAERMGMASRMHFAGWADEGDLERLLAGMTLLFNPSLSQSET
FSIVNVQAMSVGTPVAAFGIGGMLEYGNLALLDDTDPGAISTAMAGLLLD
RPRLEALARRGRAHVSSAFRADVALDRWAELYQSLGGGMMCAATRASFFA
V*
back to top

mRNA from alignment at Ecto-sp6_S_contig96:616796..620663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18672.1 ID=mRNA_Ecto-sp6_S_contig96.18672.1|Name=mRNA_Ecto-sp6_S_contig96.18672.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3868bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:616796..620663- (Ectocarpus species6 EcLAC_371)
ATGCCTTTGTGGGGGGCGTCGGCGGTATGCTGCTGTACACAGGCTATTGG ACTACTTTCCGCTGCGGTGAGTGTGAATACAAAGGGCACAGCAGTGCAGA AGGATGTTTATTTTGTAACAATAGAGAACTACTGTATTGTGGTACTCGTT GAACGTACAGTCTACATGGTACTCTCGATAGACTGCACCCATTGCATGTT ACACGGTAGATAACGGCACGATGGTGTTTCTACGTTTTGCACCGCAACTT TGTTGGTGGCGTGATGGTGCTTTGCTTCACATCATGCTAAAGAGCCAATG AAAATCAATATTATCTATTTGCTTTGCTGGTATGTGTGTATCATAGATGT TCCTGGGCAGCGAAGTCCGTGGGCAACAAGTCGAGCCTGACAAGGACATC TTCACGTCCTCTGGCGAGCTGATGAAAGGGCGATCACACCCCCGAGAGGA GGGCGTCGAAGTGACTGAAAGGATGCCTAGTGTCTTTCGAGGAGGACAAA CAGACAGCGTGGAACAACAGCTTCTTGTTGGTGCGACAGACAACCTGGTT GCCGAGAGTGAGAAGCCTTTGTCGACCCCTTTGCCGACGAAAAACGACAC CGCGGCTCTTTGGATCACGCGGCCGTTGAACGACACAATTTTACCCTTGG GGGACATTTTCCTGACTTTCGAAACGCACGGATTTACGCCAGCCGTGGAG ACTCCGATCGAGGCAAGTATGAGTCGACGAGCCACATTTCGCTTCTCGAG CGTACCGATAGAACCGAACATCACCTGGGCCGTGCATGTGGTGTTGTAAC CTGCACACATACCCGACCCTTGTATTTGCTTGAATACTTATGAGAAGATA TTTAGCGGGTGCAATCCTCCGCCTTCTGCGGTGCAACTGGAGAACCCGGA GGCGCACTACGTAATTAGACGCGTTGGTAAATTAAATATGCGCTAGACGT TCCTGCATTATTTGCTGTGCGGTCTGATGTTCATTATCCACCCCAAACTC ATAGTCCCGATTTCTCTAGACCTGCAGGTGCTCATGCCTCAAAACGGGGA CACACCGTTCCTCCTGGAGAAAGGCAACTCTATGATCCTGTCTTCGGATA TGCCGTGCACTCAACAAGTCACGTTGTACGCAACCGTTAGGGGGGAACGC GTATCGGCGTCAGTTCTGTTTTCCACGGTTCTGGGCAGAGAAGCGATACT GTCGGCCAGGACACCGTTGCCGTCTGGTGCTGCGTGGGGTCGTCCGCGTT TGCTGGTATGCCCTCCCCTAGTACGCGAACACGAGGAGGGTGATAATTCT GCCAGCTTACCCAAGGGCGACGCGAGTACCTGGCAGACGCATGAGGGTGG GACGGGCGTGATGGTTGGAAAAGGAGGGGTCTATTGTAGTAGTGGAAGTG CAGAATCACAGGGATGCGATTCCGGCGAGGAGACGACTGAGGGGCTTCCG CGTCCGATATCCCTCGTGTTTGTGGGGTCCTTGAGTCTAGACGGTCAAAA ACACGTCTGGCTGCAGCAGCTGGAACAGTTTTCTCGGGTGCGATTTGCTC CAAAATTTTTGACGTTCGAAGAACAAGAGGGGACCAACGGCAGCACCGCA GGCGCTTGGAAGAGCAACGCTGCCGAGAGTTTCAAGCAAAGACTGAGTCG TGCCGGCGTCCCGCTGGTCACGGTACGGTTGCCGCAAGTTAACTCGAGTT GGATACACGATAGTATTGGCGGGGAAGTAGCGCCTACCCACACTCTCAAA GAGATGGCCTTCAAGGCTGTGCTCGAGAGCATCCATCGTGCGGGGGGCAA TCCGCATCTGATGAGCCCTCCGTGGACCGGAGAAATTTTCCAACACATCG CGGATGCGGTCGAGAGCGCCTCTCCAGACGTGCTAGTCATCGCCAATGGG AAAACGTTGGGGGACGATCTCCTTACGAAAGCCGCTCGATGGGCAATGCG CGACAACAGCGGCTTCAAGATTGTGATGGACTTCCCAAACATTGGACCCG CGCTGGGTGTAGATGTTGATGTGATAGCCACACCGTCGCACTACGTGGCC CGGCATCGGGACACCAAAGCTCTGGCCGCCGCGGCCGGGGCAGAGGTGGT GGTCATTCCTCCCGGGGTTCCGGTCGCGCCTACCCTATCACAGACGAAGA ACCTCCTTGCTGACGAATTGCTGTCTCTCGACAGAACGTCGGGAGAGCTG CGCCGTGAACGTGTCTGCGACAGCGGTATGCTGAACAAACTTGGGTGTTG TGATCCAGCCTGCCACGTGAGGAAATATGAGACTGTTCTAGACAAACTCG TTCAGGCCGCTGCAAGCAAGCGCGGTGTTGGCCATGCCTTGGCTGACACA TCAACAAGAGTATCAAGTTGTTTCATGACCGGGGGGGGCTTGCTCACACG TACAGGGCACTAATTCGCTTGACTGTGGCAAAGCAGTGATGGCTGCTGCG CGCTTTGTTTGCACCATACGAGAGAAGCACCCAGAAATGTATGGTGTTGA TGATCGCAAACAAACGGGGCGGCATCATGCGTACTTCGGCGATATGTCGC CCTCCGGGCGCGCTTGACATATTTTCTCTTCTCGAAAGCTTGAGACCACA AGTAAGTCCGGAAAAATAGGAGTAGAACAAACAAGGCGATTGCCAAGTGC TTTGGTTGGGGTTTCGGTCACTCCCGTAAAGTATCATGCATGGGCTGCTA GAATCGTACTTCGGGATCGTTTGGAACACGTAGATCGCCATTCCGTCAAT TTTTCCTCCTTAATCCCAGGTCGTCAATGCGCCATCATCACCGTTGCGCC CGCTGCCCTCTCCCCCCTGGAACAGGTGGTCGGCTTTGCAGGCCGTTTAG CCCCCGAGAAGGGCCCTGGTCTGTTCATGGTCGTCGCTGAGGCCCTCGCA AAGCTGATCCCTTCTGCTGTTTTCGTCGTCGTGGGAGACGGCCCCCTCAG AACCTCGTTGGAAGCAGCGGCTGAGAGAATGGGGATGGCGAGGTGATTGA AACACACGTATGAAGAGATACCAGTCTAAAAGGGTACAATCTCCCAAACG TCTGCTCGGGGACGATTTCCTCGTTTCACACTCACAGGGTATTCTGTATG ACTCACAAGGAAAGAAAAAAGTCGCCGTGAGTGGGGGGGGGGCGAATAGC AAGTAAACTGTGACCGGTGATTTCATCGTGAGTCTTGGTTCTTGAGCAAG ATTTGAAGTTTTGTCTGTGGATGGGATCGACCCTCTGGTCCAACGGGTCG TTCAGCAGTGCGCATTGGACAGCAGCGGGAGGGATGCAGGGTGCTGTCTG TTTGGCTTGTCAATCAACCCTCCCAACCAAACTCAATCTTAAACCCTCCC AACACACCACCGACCGTACACATAATTCACTCCCACTTGGCCCCGTGCTC TTGCCCCCCCCCCTCTCTCTCTCGTTCTCTCTCCCTGGCTAATTGAAACG AAACAAAAGCAGCCGAATGCACTTCGCGGGCTGGGCCGACGAGGGCGACC TCGAGCGCCTCCTGGCCGGAATGACCCTCCTCTTCAACCCCAGCCTGTCG CAATCGGAGACGTTCTCCATCGTCAACGTCCAGGCGATGTCGGTCGGGAC CCCCGTGGCCGCGTTCGGCATCGGTGGGATGCTAGAGTACGGCAACTTGG CGCTCTTGGACGACACCGACCCCGGCGCGATCTCGACGGCGATGGCGGGT CTCCTGCTCGATCGCCCACGCCTCGAGGCCTTGGCCAGGAGGGGTAGGGC ACACGTTTCGTCCGCCTTTAGGGCGGACGTTGCGTTGGATCGCTGGGCCG AACTGTACCAGAGTCTAGGTGGAGGGATGATGTGTGCAGCGACTAGGGCT TCTTTCTTCGCCGTGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:616796..620663-

>mRNA_Ecto-sp6_S_contig96.18672.1 ID=mRNA_Ecto-sp6_S_contig96.18672.1|Name=mRNA_Ecto-sp6_S_contig96.18672.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2256bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:616796..620663- (Ectocarpus species6 EcLAC_371)
ATGCCTTTGTGGGGGGCGTCGGCGGTATGCTGCTGTACACAGGCTATTGG
ACTACTTTCCGCTGCGATGTTCCTGGGCAGCGAAGTCCGTGGGCAACAAG
TCGAGCCTGACAAGGACATCTTCACGTCCTCTGGCGAGCTGATGAAAGGG
CGATCACACCCCCGAGAGGAGGGCGTCGAAGTGACTGAAAGGATGCCTAG
TGTCTTTCGAGGAGGACAAACAGACAGCGTGGAACAACAGCTTCTTGTTG
GTGCGACAGACAACCTGGTTGCCGAGAGTGAGAAGCCTTTGTCGACCCCT
TTGCCGACGAAAAACGACACCGCGGCTCTTTGGATCACGCGGCCGTTGAA
CGACACAATTTTACCCTTGGGGGACATTTTCCTGACTTTCGAAACGCACG
GATTTACGCCAGCCGTGGAGACTCCGATCGAGGCAAACCTGCAGGTGCTC
ATGCCTCAAAACGGGGACACACCGTTCCTCCTGGAGAAAGGCAACTCTAT
GATCCTGTCTTCGGATATGCCGTGCACTCAACAAGTCACGTTGTACGCAA
CCGTTAGGGGGGAACGCGTATCGGCGTCAGTTCTGTTTTCCACGGTTCTG
GGCAGAGAAGCGATACTGTCGGCCAGGACACCGTTGCCGTCTGGTGCTGC
GTGGGGTCGTCCGCGTTTGCTGGTATGCCCTCCCCTAGTACGCGAACACG
AGGAGGGTGATAATTCTGCCAGCTTACCCAAGGGCGACGCGAGTACCTGG
CAGACGCATGAGGGTGGGACGGGCGTGATGGTTGGAAAAGGAGGGGTCTA
TTGTAGTAGTGGAAGTGCAGAATCACAGGGATGCGATTCCGGCGAGGAGA
CGACTGAGGGGCTTCCGCGTCCGATATCCCTCGTGTTTGTGGGGTCCTTG
AGTCTAGACGGTCAAAAACACGTCTGGCTGCAGCAGCTGGAACAGTTTTC
TCGGGTGCGATTTGCTCCAAAATTTTTGACGTTCGAAGAACAAGAGGGGA
CCAACGGCAGCACCGCAGGCGCTTGGAAGAGCAACGCTGCCGAGAGTTTC
AAGCAAAGACTGAGTCGTGCCGGCGTCCCGCTGGTCACGGTACGGTTGCC
GCAAGTTAACTCGAGTTGGATACACGATAGTATTGGCGGGGAAGTAGCGC
CTACCCACACTCTCAAAGAGATGGCCTTCAAGGCTGTGCTCGAGAGCATC
CATCGTGCGGGGGGCAATCCGCATCTGATGAGCCCTCCGTGGACCGGAGA
AATTTTCCAACACATCGCGGATGCGGTCGAGAGCGCCTCTCCAGACGTGC
TAGTCATCGCCAATGGGAAAACGTTGGGGGACGATCTCCTTACGAAAGCC
GCTCGATGGGCAATGCGCGACAACAGCGGCTTCAAGATTGTGATGGACTT
CCCAAACATTGGACCCGCGCTGGGTGTAGATGTTGATGTGATAGCCACAC
CGTCGCACTACGTGGCCCGGCATCGGGACACCAAAGCTCTGGCCGCCGCG
GCCGGGGCAGAGGTGGTGGTCATTCCTCCCGGGGTTCCGGTCGCGCCTAC
CCTATCACAGACGAAGAACCTCCTTGCTGACGAATTGCTGTCTCTCGACA
GAACGTCGGGAGAGCTGCGCCGTGAACGTGTCTGCGACAGCGGTATGCTG
AACAAACTTGGGTGTTGTGATCCAGCCTGCCACGTGGTCGGCTTTGCAGG
CCGTTTAGCCCCCGAGAAGGGCCCTGGTCTGTTCATGGTCGTCGCTGAGG
CCCTCGCAAAGCTGATCCCTTCTGCTGTTTTCGTCGTCGTGGGAGACGGC
CCCCTCAGAACCTCGTTGGAAGCAGCGGCTGAGAGAATGGGGATGGCGAG
CCGAATGCACTTCGCGGGCTGGGCCGACGAGGGCGACCTCGAGCGCCTCC
TGGCCGGAATGACCCTCCTCTTCAACCCCAGCCTGTCGCAATCGGAGACG
TTCTCCATCGTCAACGTCCAGGCGATGTCGGTCGGGACCCCCGTGGCCGC
GTTCGGCATCGGTGGGATGCTAGAGTACGGCAACTTGGCGCTCTTGGACG
ACACCGACCCCGGCGCGATCTCGACGGCGATGGCGGGTCTCCTGCTCGAT
CGCCCACGCCTCGAGGCCTTGGCCAGGAGGGGTAGGGCACACGTTTCGTC
CGCCTTTAGGGCGGACGTTGCGTTGGATCGCTGGGCCGAACTGTACCAGA
GTCTAGGTGGAGGGATGATGTGTGCAGCGACTAGGGCTTCTTTCTTCGCC
GTGTAA
back to top