mRNA_Ecto-sp6_S_contig96.18653.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18653.1
Unique NamemRNA_Ecto-sp6_S_contig96.18653.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18653.1 vs. uniprot
Match: A0A6H5KKH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKH1_9PHAE)

HSP 1 Score: 457 bits (1177), Expect = 1.390e-155
Identity = 318/462 (68.83%), Postives = 327/462 (70.78%), Query Frame = 1 
Query:    1 MDADLNPVSDDGGGS--GETAAGDIALMGAKTNELLFAQAVDPTPPNEGAVGLIFDINPLDPAVIAVVGAVVVCLVAATWWCRRKPSKTSHATTTLAADGSAGTVSAATDRPSSPVVQSRYSTRGHGVSTPGSRRLARRASSPASANRLSPPGKVMILTPQQLALCEVLYDVYNGVVPSRGIESKAVQECDLSTADIRRQFKNIKRARELDRENASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKP--PGSPRSTPVKRGAAVRPGTVGGRGSPARAAKRAA----PSSPSGRSAAPSVLPSSPPESPMRTRGRNNRTASVRVGSPKSAPTKRAXXXXXXXXXXXXXXXXXTPSKRGKPSVLEIARREAQQQTVDVASTRASSLRARRSSRSNTNTAMRRGTKS 1362
            MDA LNPVSDDGGGS  G+TAAGDI LMGAK+NELLFAQA+DPTPPN  AVGLI DINPLDPAVIAVVGAVVVCLVAATW+ RRKPSKTS ATTTLA  GSAGTVSAATDR SSPV+QSRYSTRGHGV TP SRR ARRASSPASANR SPPGKV ILTPQQLALCEVLYDV+NGVVPSRGIESKAVQE DLSTADIRRQFKNI+R RELDR NASS                                                                    XXXXXXXXXXXXXXXX     P SPRSTPVKRGAA RPGT G                 PSSPSGRSAA S LPSSPPESPMRTRGRNNRTASVR+GSPKSAPTKRA                 TPSKRGKPSVLEIARRE QQQ VDVASTRASSLRARRSSRSNTNTA RRG+KS
Sbjct:    1 MDAGLNPVSDDGGGSALGQTAAGDIDLMGAKSNELLFAQAMDPTPPNGEAVGLILDINPLDPAVIAVVGAVVVCLVAATWY-RRKPSKTSRATTTLATGGSAGTVSAATDRTSSPVIQSRYSTRGHGVRTPESRRSARRASSPASANRSSPPGKVTILTPQQLALCEVLYDVFNGVVPSRGIESKAVQEFDLSTADIRRQFKNIQRERELDRGNASSSDNNGSGAPPSSPTPCPAAQSRLTRPSTRRASIAAAAADTKQQPEAGKKPSFRAKKGSRIPVPGKQTAXXXXXXXXXXXXXXXXXXXXXPVSPRSTPVKRGAAARPGTAGXXXXXXXXXXXXXXXXXPSSPSGRSAA-SDLPSSPPESPMRTRGRNNRTASVRIGSPKSAPTKRAAAAASSPRSGSGG----TPSKRGKPSVLEIARREVQQQIVDVASTRASSLRARRSSRSNTNTATRRGSKS 456
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BLAST of mRNA_Ecto-sp6_S_contig96.18653.1 vs. uniprot
Match: D7FJR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJR0_ECTSI)

HSP 1 Score: 421 bits (1083), Expect = 2.120e-141
Identity = 377/454 (83.04%), Postives = 379/454 (83.48%), Query Frame = 1 
Query:    1 MDADLNPVSDDGGGSGETAAGDIALMGAKTNELLFAQAVDPTPPNEGAVGLIFDINPLDPAVIAVVGAVVVCLVAATWWCRRKPSKTSHATTTLAADGSAGTVSAATDRPSSPVVQSRYSTRGHGVSTPGSRRLARRASSPASANRLSPPGKVMILTPQQLALCEVLYDVYNGVVPSRGIESKAVQECDLSTADIRRQFKNIKRARELDRENASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPPGSPRSTPVKRGAAVRPGTVGGRGSPARAAKRAAPSSPSGRSAAPSVLPSSPPESPMRTRGRNNRTASVRVGSPKSAPTKRAXXXXXXXXXXXXXXXXXTPSKRGKPSVLEIARREAQQQTVDVASTRASSLRARRSSRSNTNTAMRRGTKS 1362
            MDADLNPVSDDGGGSG+TAAGDIALMGAKTNELLFAQAVDPTPPNE AVGLIFDINPLDPAVIAVVGAVV                              GTVSAATDR SSPVVQSRYSTRGHGVS PGSRRLARRASSPASANR S PGKVMILTPQQLALCEVLYDVYNGVVPSRGIESKAVQECDLS ADIRRQFKNIKRARELDRENASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KKPP SPRSTP+KRGAA RPGTVGG                                 PMRTRGRNNRTASVRVGSPKSAPTKRAXXXXXXXXXXXXXXXXXTPSKRGKPSVLEIARREAQQQTVDVASTRASSLRARRSSRSNTN AMRRGTKS
Sbjct:    1 MDADLNPVSDDGGGSGQTAAGDIALMGAKTNELLFAQAVDPTPPNEEAVGLIFDINPLDPAVIAVVGAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTVSAATDRRSSPVVQSRYSTRGHGVSPPGSRRLARRASSPASANRSSRPGKVMILTPQQLALCEVLYDVYNGVVPSRGIESKAVQECDLSPADIRRQFKNIKRARELDRENASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXST-KKPPVSPRSTPIKRGAAARPGTVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMRTRGRNNRTASVRVGSPKSAPTKRAXXXXXXXXXXXXXXXXXTPSKRGKPSVLEIARREAQQQTVDVASTRASSLRARRSSRSNTNNAMRRGTKS 453
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKH1_9PHAE1.390e-15568.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJR0_ECTSI2.120e-14183.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:517102..519454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1365
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010540.1
Cds size1365
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350592.476646-CDS-Ecto-sp6_S_contig96:517101..5172191682350592.476646-CDS-Ecto-sp6_S_contig96:517101..517219Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 517102..517219 -
1682350592.4873283-CDS-Ecto-sp6_S_contig96:517585..5182591682350592.4873283-CDS-Ecto-sp6_S_contig96:517585..518259Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 517586..518259 -
1682350592.4994485-CDS-Ecto-sp6_S_contig96:518881..5194541682350592.4994485-CDS-Ecto-sp6_S_contig96:518881..519454Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 518882..519454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18653.1prot_Ecto-sp6_S_contig96.18653.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 517102..519454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18653.1

>prot_Ecto-sp6_S_contig96.18653.1 ID=prot_Ecto-sp6_S_contig96.18653.1|Name=mRNA_Ecto-sp6_S_contig96.18653.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=455bp
MDADLNPVSDDGGGSGETAAGDIALMGAKTNELLFAQAVDPTPPNEGAVG
LIFDINPLDPAVIAVVGAVVVCLVAATWWCRRKPSKTSHATTTLAADGSA
GTVSAATDRPSSPVVQSRYSTRGHGVSTPGSRRLARRASSPASANRLSPP
GKVMILTPQQLALCEVLYDVYNGVVPSRGIESKAVQECDLSTADIRRQFK
NIKRARELDRENASSSDNNNGSGAPPSSPTPRRAAQSRLTRPSTRRASIA
AAAAADTKQQPEAGKQPSSRAKKSSRIPVPSKRAAAAAAAAAATTAPSTK
KPPGSPRSTPVKRGAAVRPGTVGGRGSPARAAKRAAPSSPSGRSAAPSVL
PSSPPESPMRTRGRNNRTASVRVGSPKSAPTKRAAAAAAAAASSPRSGGG
GTPSKRGKPSVLEIARREAQQQTVDVASTRASSLRARRSSRSNTNTAMRR
GTKS*
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mRNA from alignment at Ecto-sp6_S_contig96:517102..519454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18653.1 ID=mRNA_Ecto-sp6_S_contig96.18653.1|Name=mRNA_Ecto-sp6_S_contig96.18653.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2353bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:517102..519454- (Ectocarpus species6 EcLAC_371)
ATGGACGCCGATTTGAATCCGGTTTCAGACGACGGCGGCGGTAGTGGGGA
AACGGCGGCTGGGGATATTGCCCTGATGGGAGCAAAGACAAATGAGCTCT
TGTTCGCGCAGGCGGTGGACCCTACCCCGCCAAACGAGGGAGCGGTGGGG
TTGATTTTCGACATCAATCCTCTTGACCCGGCGGTGATCGCTGTTGTTGG
TGCCGTCGTCGTGTGTCTTGTTGCCGCGACATGGTGGTGTAGGCGCAAGC
CCAGCAAGACGTCTCATGCAACAACGACTCTCGCCGCGGACGGCAGTGCA
GGGACGGTATCAGCAGCGACCGACCGCCCGTCTTCACCCGTGGTTCAATC
GCGGTACAGCACCCGAGGGCACGGTGTCAGCACGCCGGGAAGCCGCAGAT
TGGCTCGCCGTGCATCGTCTCCCGCTTCGGCTAACCGCTTGTCGCCGCCG
GGGAAGGTGATGATTCTCACTCCCCAACAGCTTGCTCTCTGCGAGGTGTT
GTACGACGTCTACAACGGGGTGGTGCCGTCGCGCGGCATCGAGAGCAAGG
CAGTCCAGGAGTGCGATCTGTCGGTGAGTGTTGGTGTGGTTTTCTCGTGG
CGGTGGTCTGTCGGTGCCGCCAAACGCGGACATCAACCGAATCGCGCAAG
GACGCCCGGTGATGCAGGTAGTTTTCGAAATGTTTTTTTTTACGATATTC
CGAAAGAGGGTAGTCTACCCCGCGTCCACCTCTCGGTACAGTAGTACGCT
CTCCATATGCGTGGGAAATAAAGTTGCGTTCTCCCTTGAACCCTCATCCA
TCTCACAGGACTTGAGCACTGCCCTTTTATTTTTAGGCCAGCACAGCAGC
TCGACGGTACACTTGTATGTTCATGCTTGCGACGATGCACAGCAGTACTG
AAGCCGGGACACTTTTATCTGTTACGGAACGGCTTTCCCGGGGTCCGCCG
CCGTTCAAAACCGCACGCTTCGTTCTGCCACGCACCGATCAAGTGTCCTT
TGCGCGGTGGCGACGCGAACACGTGGTGTAGGTACGGCACACGTCACGAT
GGCCAGCACGAAAGCTGTGTCCTCTTCTTCCCGTTGCGTGTTCGGCAATA
TTTTCTCTCTCTCTCGATTCAACCCGCCTGACCTTCGATGCCGCCGCGCT
CCTTGCTCTCCGCTTCTCTCAACCCCGCTGAAAATGAACTGCCAGACCGC
TGACATCAGACGGCAGTTCAAGAACATCAAACGGGCACGAGAGCTAGACC
GTGAAAACGCCTCCTCCTCCGACAACAACAACGGCAGCGGTGCTCCGCCG
AGCTCGCCGACGCCCCGCCGCGCGGCGCAGTCGCGCCTAACGCGGCCCTC
GACTCGCCGCGCTTCCATTGCGGCTGCTGCTGCTGCTGACACCAAACAGC
AACCGGAAGCAGGCAAGCAACCCTCTTCCAGGGCGAAGAAGAGCTCTCGA
ATACCTGTCCCAAGCAAGCGGGCAGCAGCAGCAGCAGCAGCAGCAGCTGC
CACCACCGCTCCGTCCACCAAGAAGCCGCCGGGATCCCCGAGATCGACGC
CAGTCAAGCGCGGCGCGGCGGTGAGGCCGGGCACGGTGGGCGGCCGCGGC
TCGCCCGCGCGCGCAGCGAAGCGCGCGGCACCGTCGTCTCCATCCGGAAG
GTCGGCGGCGCCGTCGGTTCTACCGTCATCTCCGCCCGAGTCTCCAATGC
GGACGCGCGGCAGGAACAACAGGACCGCGTCCGTGCGCGTCGGCTCTCCG
AAATCTGCGCCGACGAAGCGAGCGGCGGCGGCAGCGGCGGCGGCTGCTTC
TTCCCCTAGAAGCGGCGGCGGAGGCACGCCTTCCAAGAGGGGAAAACCTT
CTGTTCTCGAGATCGCCAGGTGCTTACGTTTTCATTGGACATGCTTACTC
AATTGAGTGAAGGGCGGTTGGGCAAGGATGATTAAGGGAACGGCTCTGAG
GCGGGATCGACAGGAGCAAGGATCATAGGAATACACGCGAACACCCAAAT
GCGTCTGTTTTTACTCCAAACCGCAATCTCTCTCCTTCATGATCGTCATT
GCAGCTTCACAAGCCGCTCTTTCGTCGTCTATTAACGGATTGTTGCCTGC
CGGCGAAACGACTCACCGAAAGACTGCTGTCAGACAATCGTCAAACTCGC
GCATCCATCATCATCTTCAAAGCTTCTAGTACTGCCCCGAATCCAATTGG
GCCTTATGATAATACCTTGATCTACTTCCCCACAGGCGCGAGGCTCAGCA
GCAGACCGTCGACGTTGCCAGCACCCGTGCAAGCAGTCTGCGGGCACGCA
GAAGCAGCAGGAGCAACACCAACACCGCCATGCGTCGCGGGACTAAGTCC
TAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:517102..519454-

>mRNA_Ecto-sp6_S_contig96.18653.1 ID=mRNA_Ecto-sp6_S_contig96.18653.1|Name=mRNA_Ecto-sp6_S_contig96.18653.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1365bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:517102..519454- (Ectocarpus species6 EcLAC_371)
ATGGACGCCGATTTGAATCCGGTTTCAGACGACGGCGGCGGTAGTGGGGA
AACGGCGGCTGGGGATATTGCCCTGATGGGAGCAAAGACAAATGAGCTCT
TGTTCGCGCAGGCGGTGGACCCTACCCCGCCAAACGAGGGAGCGGTGGGG
TTGATTTTCGACATCAATCCTCTTGACCCGGCGGTGATCGCTGTTGTTGG
TGCCGTCGTCGTGTGTCTTGTTGCCGCGACATGGTGGTGTAGGCGCAAGC
CCAGCAAGACGTCTCATGCAACAACGACTCTCGCCGCGGACGGCAGTGCA
GGGACGGTATCAGCAGCGACCGACCGCCCGTCTTCACCCGTGGTTCAATC
GCGGTACAGCACCCGAGGGCACGGTGTCAGCACGCCGGGAAGCCGCAGAT
TGGCTCGCCGTGCATCGTCTCCCGCTTCGGCTAACCGCTTGTCGCCGCCG
GGGAAGGTGATGATTCTCACTCCCCAACAGCTTGCTCTCTGCGAGGTGTT
GTACGACGTCTACAACGGGGTGGTGCCGTCGCGCGGCATCGAGAGCAAGG
CAGTCCAGGAGTGCGATCTGTCGACCGCTGACATCAGACGGCAGTTCAAG
AACATCAAACGGGCACGAGAGCTAGACCGTGAAAACGCCTCCTCCTCCGA
CAACAACAACGGCAGCGGTGCTCCGCCGAGCTCGCCGACGCCCCGCCGCG
CGGCGCAGTCGCGCCTAACGCGGCCCTCGACTCGCCGCGCTTCCATTGCG
GCTGCTGCTGCTGCTGACACCAAACAGCAACCGGAAGCAGGCAAGCAACC
CTCTTCCAGGGCGAAGAAGAGCTCTCGAATACCTGTCCCAAGCAAGCGGG
CAGCAGCAGCAGCAGCAGCAGCAGCTGCCACCACCGCTCCGTCCACCAAG
AAGCCGCCGGGATCCCCGAGATCGACGCCAGTCAAGCGCGGCGCGGCGGT
GAGGCCGGGCACGGTGGGCGGCCGCGGCTCGCCCGCGCGCGCAGCGAAGC
GCGCGGCACCGTCGTCTCCATCCGGAAGGTCGGCGGCGCCGTCGGTTCTA
CCGTCATCTCCGCCCGAGTCTCCAATGCGGACGCGCGGCAGGAACAACAG
GACCGCGTCCGTGCGCGTCGGCTCTCCGAAATCTGCGCCGACGAAGCGAG
CGGCGGCGGCAGCGGCGGCGGCTGCTTCTTCCCCTAGAAGCGGCGGCGGA
GGCACGCCTTCCAAGAGGGGAAAACCTTCTGTTCTCGAGATCGCCAGGCG
CGAGGCTCAGCAGCAGACCGTCGACGTTGCCAGCACCCGTGCAAGCAGTC
TGCGGGCACGCAGAAGCAGCAGGAGCAACACCAACACCGCCATGCGTCGC
GGGACTAAGTCCTAA
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