mRNA_Ecto-sp6_S_contig96.18624.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18624.1
Unique NamemRNA_Ecto-sp6_S_contig96.18624.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18624.1 vs. uniprot
Match: D8LH18_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH18_ECTSI)

HSP 1 Score: 427 bits (1099), Expect = 2.240e-148
Identity = 221/228 (96.93%), Postives = 222/228 (97.37%), Query Frame = 1 
Query:    1 MKLDSFRGGLWCLVVSASMSYVGGFVAGTSPSALTPAPHRTRALESMSEHRGVPKRRRLLYAEGXXXGQESVEPAAVLRTAVETRKAVPMTEVSEALRVLAEDGGSPLACGAEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEASIDATAGPLPIGGMRGKCWWRGGEENELAFMLGAVKLGPFKFGKDKNEVKTYKFFVNDGKVLAARSSAGGFTLLSRVPEKG 684
            MKLDSF GGLWCLVVSASMSYVGGFV GTSPSALTPAPHRTRALESMSEHRGVPKRRRLLYAEG XXGQESVEPAAVLRTAVETRK VPMTEVSEALRVLA DGGSPLACGAEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEASIDATAGPLPIGGMRGKCWWRGGEENELAFMLGAVKLGPFKFGKDKNEVKTYKFFVNDGKVLAARSSAGGF LLSRVPE+G
Sbjct:    1 MKLDSFCGGLWCLVVSASMSYVGGFV-GTSPSALTPAPHRTRALESMSEHRGVPKRRRLLYAEGGXXGQESVEPAAVLRTAVETRK-VPMTEVSEALRVLAADGGSPLACGAEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEASIDATAGPLPIGGMRGKCWWRGGEENELAFMLGAVKLGPFKFGKDKNEVKTYKFFVNDGKVLAARSSAGGFALLSRVPEEG 226
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18624.1 vs. uniprot
Match: A0A836CJ46_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ46_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.080e-21
Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 1 
Query:  226 AVLRTAVETRKAVPMTEVSEALRVLAEDGGSPLACGAEDVEG-SWELVFSTQLKSGYMPIRELVGFYPSREEASIDATAGP-LPIGGMRGKCWWR---GGEENELAFMLGAVKLGPFKF---GKDKNEVKTYKFFVNDGKVLAARSSAGGFTLLSRV 672
            A++  +V+TR+ +P   V +AL  L +      A   +DV+G +WELVFS+QL  GYMP+RE++ F  S  + S+  T GP +P+GG++G C W+   G +   ++F L  V LGP  F   G  +   KTY FF +   VLAARSS GG  +L +V
Sbjct:   50 ALVLESVDTRQ-IPAENVVQALESLEQKAQ---AVRQQDVDGLNWELVFSSQLSKGYMPVREVICFDISNGKISLSTTFGPGIPLGGIQGTCSWQEPEGSQPGVVSFNLSKVLLGPIAFEKPGAKEAPPKTYSFFFSGDGVLAARSSNGGVAVLKKV 202
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18624.1 vs. uniprot
Match: A0A2V0NPG4_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NPG4_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 5.290e-8
Identity = 55/162 (33.95%), Postives = 77/162 (47.53%), Query Frame = 1 
Query:  217 EPAAVLRTAVETRKAVPMTEVSEALRVLAEDG--GSPLACGAEDVEGSWELVFSTQLKSG---YMPIRELVGFYPSREEASIDATAGPLP--IGGMRGKCWWRGGEENELAFMLGAVKLGPFKFGKD------KNEVKTYKFFVNDGKVLAARSSAGGFTLL 663
            E  ++L+TA  T+   P  E+ E   V  E      P   G + V+GSW LVFST        Y+P++E +    + +  S+++  GP    IGG      WR  E  EL F   AV +    FG          + KTY F+   G++ AARSSAGG +LL
Sbjct:   63 ECLSLLKTAATTKAVDP--EIVEGALVWLEQNTAAGPAGGGVQSVDGSWRLVFSTSTGLRFFQYIPVKEDLVIDTASKAISLESELGPFRFVIGGAISG--WRP-ESGELDFQFSAVDI--LLFGNKIWTVNPATKPKTYSFYFVGGRISAARSSAGGLSLL 217
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18624.1 vs. uniprot
Match: A0A0D2MG47_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MG47_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.140e-7
Identity = 50/157 (31.85%), Postives = 76/157 (48.41%), Query Frame = 1 
Query:  226 AVLRTAVETRKAVPMTEVSEALRVLAEDGGSPLACGAEDVEGSWELVFSTQLKSG---YMPIRELVGFYPSREEASIDATAGPLP--IGGMRGKCWWRGGEENELAFMLGAVKLGPF----KFGKDKNEVKTYKFFVNDGKVLAARSSAGGFTLLSR 669
            ++L+ A  T+   P  E+ E   V  E+  +  + G E ++GSW LVFST        Y+P++E +         S+++  GP    IGG      W+  +  EL F   +V +  F    K      + KTY F+   G++ AARSSAGG +LL R
Sbjct:    6 SLLKNAATTKSVSP--ELVEGALVWLEESTAGESSGVESIDGSWRLVFSTSTGLRFFQYIPVKEDLVIDSKSGAISLESELGPFRFIIGGAISA--WKPAK-GELDFQFSSVDILLFGNKIKTLSPTTKPKTYSFYFVGGRISAARSSAGGLSLLLR 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LH18_ECTSI2.240e-14896.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJ46_9STRA1.080e-2140.76Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2V0NPG4_9CHLO5.290e-833.95Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A0D2MG47_9CHLO1.140e-731.85Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:220780..225370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1157
Hectar predicted targeting categorychloroplast
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010890.1
Cds size687
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18624.1prot_Ecto-sp6_S_contig96.18624.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 221250..225370 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350588.3507037-UTR-Ecto-sp6_S_contig96:220779..2212491682350588.3507037-UTR-Ecto-sp6_S_contig96:220779..221249Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 220780..221249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350588.3615327-CDS-Ecto-sp6_S_contig96:221249..2213151682350588.3615327-CDS-Ecto-sp6_S_contig96:221249..221315Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 221250..221315 -
1682350588.3698192-CDS-Ecto-sp6_S_contig96:221943..2220851682350588.3698192-CDS-Ecto-sp6_S_contig96:221943..222085Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 221944..222085 -
1682350588.3776417-CDS-Ecto-sp6_S_contig96:222362..2225071682350588.3776417-CDS-Ecto-sp6_S_contig96:222362..222507Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 222363..222507 -
1682350588.385576-CDS-Ecto-sp6_S_contig96:223024..2230991682350588.385576-CDS-Ecto-sp6_S_contig96:223024..223099Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 223025..223099 -
1682350588.3962646-CDS-Ecto-sp6_S_contig96:223441..2236211682350588.3962646-CDS-Ecto-sp6_S_contig96:223441..223621Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 223442..223621 -
1682350588.4042912-CDS-Ecto-sp6_S_contig96:225291..2253701682350588.4042912-CDS-Ecto-sp6_S_contig96:225291..225370Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 225292..225370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18624.1

>prot_Ecto-sp6_S_contig96.18624.1 ID=prot_Ecto-sp6_S_contig96.18624.1|Name=mRNA_Ecto-sp6_S_contig96.18624.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=229bp
MKLDSFRGGLWCLVVSASMSYVGGFVAGTSPSALTPAPHRTRALESMSEH
RGVPKRRRLLYAEGGGGGQESVEPAAVLRTAVETRKAVPMTEVSEALRVL
AEDGGSPLACGAEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEASID
ATAGPLPIGGMRGKCWWRGGEENELAFMLGAVKLGPFKFGKDKNEVKTYK
FFVNDGKVLAARSSAGGFTLLSRVPEKG*
back to top

mRNA from alignment at Ecto-sp6_S_contig96:220780..225370-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18624.1 ID=mRNA_Ecto-sp6_S_contig96.18624.1|Name=mRNA_Ecto-sp6_S_contig96.18624.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4591bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:220780..225370- (Ectocarpus species6 EcLAC_371)
ATGAAGCTGGACAGCTTCCGCGGCGGACTGTGGTGCCTCGTGGTCTCGGC
ATCGATGTCCTATGTCGGCGGGTTCGTTGGTGAGTTACCGCTACATGCAC
ATGTACATGAATACATGTTAGACGACATTCTACTGCAGTACAACCACACT
CCCAGGGACAAAGGAGGTATCGTCCCTCAACCACCAACCACCATTACCCC
GCAATGAAGCCTGGTTGTACGGACAACAATTCTACAAGCATCCCCGACAA
TCTCTCCTTTGTTGGCCGCCGTAACCCTGGCCGGCCTTGGCCTCATCTCC
GCTGTGCTTGGCCAATTGTTGGTCGAAGATGGTGCGCTGCCCCGCCGTGA
ACCCGGCTACTGCTGTCTTCTCCTTGAGCGGGGCGGCCGCTGACAGGCCA
AAGAGCGTGGTATCGGGGCGGGCGGAGAGAGGAGCAGGAGCCCCACGGAG
GGGGGTGGCGAGGAGGGAGCAGCTTTGCGGGCGACACCACGGATGCGGCG
TTGGGTAGCGCGGTGCTGCTTCGAGTCGAAATCGTCGATCGGATTATGAC
GGTCGTCGATGGCGGCTTGTTCTTCGTGTTCCGCCAGATCGATAGCGTTT
TTCCGATATCGCTGCTGGCGCTTCAGGGCGCGCCATCGACGAGCGTCATA
ATCCAAGCAGCACCACGCTACCCAACGCCACATCGGTGGTATCGCCCGCA
AAGCTGCTCCCTCCCCACCGTCACCCTCCGGGGGGCTCCTGCTCCTGTCT
CCGCCCGCCCCGACGCCACGTCCTTTGGCCTGTCAGCCACCGGCCGGCTC
GAGGCGAAGACAGCAGTGAATAGCCGGTTCACGCCGGGGCAGCGCGCCAT
CTTCGACCAACAATTGGCCAAGCACGGCGGAGATGAGGCCAAGGCCGGCC
AGGGTTACGGCGGCCAACAAATGAGAGATTGTCGGGGTTGATTGTCGACT
TGTTGTCCGCGGTTGACGGTAGTGGTGATGCCGCCGCTGCTGCTGCAGTT
TCATTGTTGTTGTTGTTTTTGTTGTTGTTCAAATAGTTGTTCACAGAGTT
GTTCATAAGTTGTTGTTACCATTTGTTGTCTGTTGTTGTTCGTTGAAACT
CAGGACACGGGGCGAGTCGCGAGACACGATACTCTCAGTCAGAAGCCCCG
AGAACCATCAACCCGTGATTCCCGATTGGATTTACGGAAGACTATCAACC
CATCGTGATGCTCGTTCCGCCTACCTGTAATACTTGCGCACAGATAGAGG
TATACGTACACCCGTCGGCCTTTGGTTCTGCTGCTTTGCGTCAGAAAATG
GTCCTCTGTTGCAAACTTGAACCAGCCAGACGGAGAGTCAGTTGTGCGGG
AACAAACAAATTTCCGAACCCGGAAAAATTTGCAGCTGAAATTTTCGGGA
ACAGGGTTGATGCGTTTACCAACTCGTGCAACAGACGAAAAATGAGTGCT
TTGCGCGTGGACGCTCGGCGCTCCCACCCGTTTTTCTATGGCAACGCGTA
CGGTACGTCGATCTGCAAGGCTTGCATTGGATTCCATGCAGATCCATTTT
TTCTCCGCTGATCAAAAACCACGAAATACAGTATGTATCCCGAATGAATC
TCTGCCAAAGATCGCCGAAGCGTTTCCCAACCCACCCGGTATCGGCGTCC
CACTCTTACTTGAAACACACCAGTAGCCCCCTAGTCTGGTTTCCCGAAAA
AGATGCGGCGAACAGTTACAATCGGGGCCTTGATGACACTCACGCCAAGC
AGGAACGTCACCTTCGGCTCTCACGCCAGCACCCCATCGCACGCGAGCGC
TAGAAAGCATGAGCGAGCACCGTGGAGTTCCTAAACGAAGAAGGCTTCTT
TACGCGGAGGGAGGAGGCGGGGGGCAGGAGTCAGTGGAACCAGCTGCGGT
GTTACGAACGGCGGTGGAGACTCGTAAAGGTTGAGGTTTTCTTGCAACGA
GCTGTTGGGGAATAGGCCAGGGTATAGTCTGCGCTTGTGACCTCGTCGAA
TCCGGTGCTACGCGAGGTGAAGTTTGAGTCTAGAGAACGCGGTGATCGCG
TACTCGCGGGGAGCGGCCTTATGCATGCGCAAACAAATCCACGCCGCAGC
AGGTGATAAGCATCAGGGACGGGTATTGCGTGGATTTGTTTCTTTGAGCG
ACTGAAGAAGAAGCGTGCTGCTTCCTGCACGTGGTACGTAATAACTCTGT
GCCCGCCGTGCGGGCCTCCCACATCTGATTTGTGTTTTCTTTGAAACTAT
CTGATCTTCGCAATCGACAAGCAGTGCCAATGACGGAGGTGTCCGAGGCG
CTGAGGGTTCTGGCGGAAGATGGTGGCTCCCCGCTGGCTTGCGGAGGTAC
GTACGCGCGTGTGCGACGCTCAGCCACAAAACGTTTTGTTGTGGGTTTCC
TCGAGGAGTGCGAACGTGCCGGCAAGGGATGGGGGTCCTCGCCCTTCGCC
GATTCTTGTGAGGGGGTCGTCGGTACGGTAAATACCCCCCCCCCTTTTCC
CCCAACGGACCGCCTTCGCGGGAAATTCAGTATTTCAAGGAAAATACAAC
AGGGAGGGGGGTACGCAGACCGTATTCCCTAACCCTAACCCTAACCCAAT
TGTATGCTGTATCCAACATGTTTCCTGAATACAATACACCCAGCGAAGGC
TATCGCCCCCAACAGAAGTAACCCCTTGATATGCGGCCCTGAGACAAGGT
CATACTCAAAGCGTATCATTAGCACCGGCCAAAATGAGTGAAGAAGACCG
TCACAAAACGACGCCACTCGTGGCAGCACACAATCCGTCCGTCACGCCTA
GCCCCCCCCAACGTCTGACCCTTCTCGCCCTCGCTCGACCCCCGTGTATT
CTCGAGAGAGCAGCCGAGGACGTGGAGGGTAGCTGGGAGCTCGTTTTCAG
CACCCAGCTCAAGAGCGGGTACATGCCGATCCGTGAGCTGGTCGGCTTCT
ACCCGTCCCGCGAGGAGGCCTCCATCGACGCTACGGCTGGGCCGCTGCCA
ATCGGGGGGTGCGTCAATGGCGTTGTTCCCCAAGCTTGAACAGGGCGTCC
ACAAAGAGCCAGGGCAAATTTGGGGCTCTTGGCGTGATTCCTTGCCCGCA
CCACACACACTGCTCAGGCCGCACGCGTTGCACAGACTAAGCCACGCAAA
CCGTTCCTCTTCTCCCCAACAAGAGTGTTCTCGAGCGCTGCTGCTGCTGC
TGTGTTGATGCGGCTCTCCCATCCCCTCGCCAAAATACCGCCGTGACACC
CTCCGCCGCCCTCCCGCTTGGCCCCCGATTTGCAGCATGCGCGGCAAGTG
CTGGTGGAGGGGGGGCGAGGAGAACGAATTGGCGTTTATGCTGGGTGCCG
TGAAGCTAGGCCCATTCAAATTCGGCAAGGACAAGAACGAGGTCAAGACG
TACAAGTTCTTCGTAAACGACGGAAAGGTGCGCCGTCGGGAGAACCGCGG
CGAAACTCATGCCGTTTCGTTTCGGGAGATTGTAACTTTTAATGGACGAT
TGGTTCTGTGCAACAGCAGTCAGTGTCGTTGAGAAATTGTGTTACATTGT
CGACGAGGGTATGTATGCGGTTTACAAAGCAGGCGTTTCTCCTCCCTGGT
TTCCACACGGGGGTGAAATGCGCGCGCGAGGAGTTGCAAACCCAGTCCAT
CCCCCGTCGCTCGTTTAAAAAAAAAACCAGGAAGATACACCACTTTTTAC
ACGCACATGCGGTATGTCAAAAGCTAAGAGTGCCGGTGTTCATGGTCAGG
CGAGTACTGCCCCTGTCCACACGGATGTCCCACGTCCTACGTAGTCGACA
CGCACACAGCAGTGGGGCGCCATCAGCAGTGCTGGTGCCCAGTATGGTGC
CGGAAATATCTCAGGAGGGCACAGCCAGAGCCCTCAGGAGTTTGGCACTA
TTCGGCACGATTCTGAATTAAGTGTTTCGGCGGGCACATGGTACGAATCT
TGTGCCGTTTGCCGTTCCCCCCTGATGTCGCTTTCTTGACTTCACCCTCC
CTTTGCTCGTTTCGGGGTTTACCACAACTATATATGCTTCGGCGTGCCGA
TCAAGGTTCTGGCGGCAAGAAGCAGCGCGGGGGGGTTCACGCTTCTTTCG
CGCGTCCCTGAAAAGGGGTAGCCGAGAAGAGCAGTTTTGGGGGGTGTCAA
CGGCGGCGGCTCCATCGAAACGGCACAGCAGTAGTGCCGGTTCACGAACA
GTAACTTGTGCGGAGACAACGATGGTTCCAGCATGAGGCACTGGGAGCGT
GGGGGCGTGGGAGAAGTGACGCTCCATGGACAACACTAGGGAATGAATGC
AGCTCTCGAGTATTTATTTTTTTGCAAGAACCGAATCTCTATACCCACAG
ATAAAGAGTCCGGGATAAAGGTAGTAAATGTTTCATTTGTGTTGTCGGGC
CTTGGTGGCGAACAGTTGTTTGAGTATTACACAACCGCTGCGGGATGCGT
ATCGTTTCTTGTTGGCAAGAGTGCTCATACGTACAAGTGTCGGGTGCAGG
GTCCATCGACACACAACAGTATGTCGGAGGAGTTTCAGGATTGTCAAAGA
GTTGCTCGTTTCGACTTTAGAGCGCACAGCCAAAATACGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:220780..225370-

>mRNA_Ecto-sp6_S_contig96.18624.1 ID=mRNA_Ecto-sp6_S_contig96.18624.1|Name=mRNA_Ecto-sp6_S_contig96.18624.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:220780..225370- (Ectocarpus species6 EcLAC_371)
ATGAAGCTGGACAGCTTCCGCGGCGGACTGTGGTGCCTCGTGGTCTCGGC
ATCGATGTCCTATGTCGGCGGGTTCGTTGCAGGAACGTCACCTTCGGCTC
TCACGCCAGCACCCCATCGCACGCGAGCGCTAGAAAGCATGAGCGAGCAC
CGTGGAGTTCCTAAACGAAGAAGGCTTCTTTACGCGGAGGGAGGAGGCGG
GGGGCAGGAGTCAGTGGAACCAGCTGCGGTGTTACGAACGGCGGTGGAGA
CTCGTAAAGCAGTGCCAATGACGGAGGTGTCCGAGGCGCTGAGGGTTCTG
GCGGAAGATGGTGGCTCCCCGCTGGCTTGCGGAGCCGAGGACGTGGAGGG
TAGCTGGGAGCTCGTTTTCAGCACCCAGCTCAAGAGCGGGTACATGCCGA
TCCGTGAGCTGGTCGGCTTCTACCCGTCCCGCGAGGAGGCCTCCATCGAC
GCTACGGCTGGGCCGCTGCCAATCGGGGGCATGCGCGGCAAGTGCTGGTG
GAGGGGGGGCGAGGAGAACGAATTGGCGTTTATGCTGGGTGCCGTGAAGC
TAGGCCCATTCAAATTCGGCAAGGACAAGAACGAGGTCAAGACGTACAAG
TTCTTCGTAAACGACGGAAAGGTTCTGGCGGCAAGAAGCAGCGCGGGGGG
GTTCACGCTTCTTTCGCGCGTCCCTGAAAAGGGGTAG
back to top