mRNA_Ecto-sp6_S_contig95.18593.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig95.18593.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI) HSP 1 Score: 481 bits (1237), Expect = 4.710e-164 Identity = 287/325 (88.31%), Postives = 292/325 (89.85%), Query Frame = 1
Query: 1 MDGVFEEEGEGGHAEEEGVLGGRGGGIGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASIRCGRRRTWRRFEAWMSPH--QEPAVPDXXXXXXXXSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYMRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKALFIHDAAARLSXXXXXXXXXXXXXXXXXXXXXXXXXDENLMFFNTF 969
MDGVFEEEGEGGHAEEEGVLGG IGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASI R + EAW + + + AVPD SALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQY+RGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKALFIHDA XXXXXXXXXXXXXXXXXXXXXXXXX ENLMFFNTF
Sbjct: 1 MDGVFEEEGEGGHAEEEGVLGGXXXXIGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASI-SARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKALFIHDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENLMFFNTF 324
BLAST of mRNA_Ecto-sp6_S_contig95.18593.1 vs. uniprot
Match: H3GD40_PHYRM (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD40_PHYRM) HSP 1 Score: 132 bits (332), Expect = 7.560e-29 Identity = 80/261 (30.65%), Postives = 141/261 (54.02%), Query Frame = 1
Query: 82 GAGATVLD-SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASIRCGRRRTWRRFEAWMSPHQEPAVPDXXXXXXXXSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYMRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKAL 834
G+GAT + S++W+ G + RD R+ A + + + +A ++V+ ML +SSP ER+ DE S + R E+ A +C D + MV K+ + +P +YVV+M K+V++++ + +D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D+++ +QE+PKRAD NP TF+ W++ Q+ + E + ++ +R RRKF +K L
Sbjct: 310 GSGATTDERSLVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVEAMLQHSSPREREKDEPTSFPVSA---RDLFEMESVKKALPSEANNPWRLLLNYIMVMCRDKSGMVMKV-SQEAFDPTQARSGDGGQYVVHMQKIVEFLQQATTRAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQTRIAERVQDSLCRLRRRRKFEAEENKEL 564
BLAST of mRNA_Ecto-sp6_S_contig95.18593.1 vs. uniprot
Match: A0A0P1AWK6_PLAHL (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK6_PLAHL) HSP 1 Score: 131 bits (330), Expect = 1.670e-28 Identity = 76/255 (29.80%), Postives = 135/255 (52.94%), Query Frame = 1
Query: 94 TVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASIRCGRRRTWRRFEAWMSPHQEPAVPDXXXXXXXXSALCTDLTSMVSKIP--------GSDTQNPRYVVNMAKMVQYMRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKAL 834
T S++W+ G + RD R+ + + + +A ++V+ ML +SSP ER+ DE SA + R E+ + + +C D + M+ K+ + +YVV+M K+V++++ V +D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D++V +QE+PKRAD NP TF+ W++ Q+ + E + ++ +R RRKF +K L
Sbjct: 349 TDETSLVWRFGMTQMLRDLRHKTCIRFASENI--NAVAGVIVEAMLQHSSPREREKDEATSAPVSA---RDLFNMESVKKALPSESNNPWRLLLNYITVMCRDKSGMIMKVAQEAFDPTKARASDGGQYVVHMQKIVEFLQQATVHAYIQDKYGVASARIVRLLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRITERVQDSLCRLRRRRKFEAEENKEL 598
BLAST of mRNA_Ecto-sp6_S_contig95.18593.1 vs. uniprot
Match: A0A5D6XL36_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL36_9STRA) HSP 1 Score: 131 bits (329), Expect = 2.490e-28 Identity = 82/262 (31.30%), Postives = 136/262 (51.91%), Query Frame = 1
Query: 88 GATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASIRCGRRRTWRRFEAWMSPHQEPAVPDXXXXXXXX-----SALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYMRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKAL 834
GA +++W+ G D+ RD R+ A + + + +A ++V ML +SSP ER+ DE S + E + P + A+P + +C D + MV K+ D R YVV+M K+V ++R +D++G +ARI+ +L++ + L+QQ +GE+A++P +DAR RLY L +R+V +QEVPKRAD NP T Y W++ ++ + V E + ++ +R RRK +K L
Sbjct: 368 GALAEQALVWRFGADQLMRDLRHAACVRFATENI--NTVAGVIVAAMLQHSSPHEREKDEATSYPVTAR--------ELFAVPAVKSALPKDSKDTWRLLLNYITVMCRDKSGMVMKVAPETFDATQARAGDGGQYVVHMQKIVAFLRQATTHAYVQDKFGVPSARIVRLLVEKRQLEQQTIGELALLPSNDARRRLYELFAERLVKLQEVPKRADHNPAFTLYCWSVDVPRMERSVRERVEASLCKLRARRKLEAEQNKEL 619
BLAST of mRNA_Ecto-sp6_S_contig95.18593.1 vs. uniprot
Match: A0A0W8C9C8_PHYNI (DNA-directed RNA polymerase III subunit RPC3 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9C8_PHYNI) HSP 1 Score: 129 bits (325), Expect = 8.200e-28 Identity = 81/261 (31.03%), Postives = 140/261 (53.64%), Query Frame = 1
Query: 82 GAGA-TVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASIRCGRRRTWRRFEAWMSPHQEPAVPDXXXXXXXXSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYMRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKAL 834
G+GA T S++W+ G + RD R+ A + + + +A ++V ML +S+P ER+ DE SA + R E+ + A +C D + MV K+ + +P +YVV+M K+V++++ +D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D+++ +QE+PKRAD NP TF+ W++ Q+ V E + ++ +R RRKF +K L
Sbjct: 372 GSGAHTDERSLVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVTAMLQHSAPREREKDEPTSAPVSA---RDLFNMESVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPIQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARVTERVQDSLCRLRRRRKFEAEENKEL 626
BLAST of mRNA_Ecto-sp6_S_contig95.18593.1 vs. uniprot
Match: G4Z0C0_PHYSP (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z0C0_PHYSP) HSP 1 Score: 127 bits (318), Expect = 4.380e-27 Identity = 80/261 (30.65%), Postives = 138/261 (52.87%), Query Frame = 1
Query: 82 GAGA-TVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASIRCGRRRTWRRFEAWMSPHQEPAVPDXXXXXXXXSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYMRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKAL 834
G+GA T S++W+ G + RD R+ A + + + +A ++V ML +SSP ER+ DE S + R E+ A +C D + MV K+ + +P +YVV+M K+V++++ +D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D+++ +QE+PKRAD NP TF+ W++ Q+ + E + ++ +R RRKF +K L
Sbjct: 303 GSGAHTDERSLVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSA---RDLFDMESVKKALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKEL 557
BLAST of mRNA_Ecto-sp6_S_contig95.18593.1 vs. uniprot
Match: W7U6Z3_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Z3_9STRA) HSP 1 Score: 126 bits (317), Expect = 9.040e-27 Identity = 85/253 (33.60%), Postives = 130/253 (51.38%), Query Frame = 1
Query: 79 IGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERK--VDEQVSASIRCGRRRTWRRFEAWMSPHQEPAVPDXXXXXXXXSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYMRGNLVKCTARDRY--------GKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRK 807
+GAG D VLW++G ++FHRD R++ L V+ + + A +V+ +L +S P ER V S + G +S + +P L D +V + T Y V + ++++ +R + R+RY G ARI +LL KYLD QQV E+AM+ + RERLYR+ D +++VQE+P+RAD +PN TFYLWT QV + + + +YK LN+RLRR+
Sbjct: 409 VGAG----DEVLWRVGVEQFHRDLRHVTCLRFVRQKV--NTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGE----------LSSRVQ--LPPNVTVKMYLEVLQNDPVQIVDR---EGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQ 640
BLAST of mRNA_Ecto-sp6_S_contig95.18593.1 vs. uniprot
Match: A0A3R7FY14_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY14_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.440e-26 Identity = 77/261 (29.50%), Postives = 138/261 (52.87%), Query Frame = 1
Query: 82 GAGATVLD--SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASIRCGRRRTWRRFEAWMSPHQEPAVPDXXXXXXXXSALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYMRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKAL 834
G+ A +D S++W+ G + RD R+ A + + + +A ++V ML +S+P ER+ DE +SA + R E+ + + +C D + MV K+ D R YVV+M K+V++++ +D++G +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L +++V +QE+PKRAD NP TF+ W++ + + E + ++ +R RRKF +K L
Sbjct: 353 GSSAVDMDERSLVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVAAMLQHSAPREREKDEPISAPVSA---RDLFGMESVKNALPSESNNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPSQARSGDGGQYVVHMQKIVEFLQQVTTHAYIQDKFGAASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYGEKLVKMQEIPKRADHNPAFTFFCWSVDVPHMQTRITERVQDSLCRLRRRRKFEAEENKEL 608
BLAST of mRNA_Ecto-sp6_S_contig95.18593.1 vs. uniprot
Match: A0A662YGR9_9STRA (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGR9_9STRA) HSP 1 Score: 123 bits (308), Expect = 9.430e-26 Identity = 76/252 (30.16%), Postives = 133/252 (52.78%), Query Frame = 1
Query: 106 SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASIRCGRRRTWRRFEAWMSPHQEPAVPDXXXXXXXXSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYMRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKAL 834
S++W+ G + RD R+ A + + + +A ++V ML +SSP ER+ DE S + R E+ S + +C D + MV K+ +T +P +YVV+M K+V+++R +D++G +ARI+ +L++ + L+Q+ +GE+A++P +D R RLY L +++V +QEVPKRAD NP TF+ W++ ++ V E + ++ +R RRK +K L
Sbjct: 364 SLVWRFGAAQLLRDLRHKACIKFASENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSA---RELFAMESVKSALPPESNNPWRLLLNYIMVMCRDKSGMVMKV-SQETFDPNQTRAGDGGQYVVHMQKIVEFLRQATTHAYVQDKFGVASARIVRLLVEKRQLEQKAIGELALLPSNDVRRRLYELFAEKLVKMQEVPKRADHNPALTFFCWSVDVPRMQARVAERIQDSVCRLRRRRKAEADENKEL 609
BLAST of mRNA_Ecto-sp6_S_contig95.18593.1 vs. uniprot
Match: A0A484E8N6_BRELC (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8N6_BRELC) HSP 1 Score: 123 bits (308), Expect = 1.010e-25 Identity = 74/251 (29.48%), Postives = 133/251 (52.99%), Query Frame = 1
Query: 106 SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASIRCGRRRTWRRFEAWMSPHQEPAVPDXXXXXXXXSALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYMRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKAL 834
S++W+ G + R+ R+ A + + + +A ++V ML++SSP ER+ +E SA + R E A + +C D + M+ K+ D+ R YVV+M K+V++++ +DR+G +ARI+ +L++ + L+Q+ +GE+A++P ++AR RLY L D++V +QE+PKRAD NP TF+ W++ Q+ + E + ++ +R RR F +K L
Sbjct: 358 SLVWRFGMTQMLRELRHKACIRFATENV--NAVAGVIVTAMLEHSSPRERESNESTSAPVSA---RDLYNMETVKKALPSEANNPWRLLLNYITVMCRDKSGMMMKVAQETFDSTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDRFGVASARIVRLLIEKRQLEQKTIGELALLPSNEARHRLYELYTDKLVKMQEIPKRADHNPAFTFFCWSVDIPQMHVRITERVQGSLCRLRRRRTFEAEENKEL 603 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig95.18593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig95.18593.1 >prot_Ecto-sp6_S_contig95.18593.1 ID=prot_Ecto-sp6_S_contig95.18593.1|Name=mRNA_Ecto-sp6_S_contig95.18593.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=324bp MDGVFEEEGEGGHAEEEGVLGGRGGGIGAGATVLDSVLWKLGFDKFHRDFback to top mRNA from alignment at Ecto-sp6_S_contig95:529847..537431+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig95.18593.1 ID=mRNA_Ecto-sp6_S_contig95.18593.1|Name=mRNA_Ecto-sp6_S_contig95.18593.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7585bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:529847..537431+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig95:529847..537431+ >mRNA_Ecto-sp6_S_contig95.18593.1 ID=mRNA_Ecto-sp6_S_contig95.18593.1|Name=mRNA_Ecto-sp6_S_contig95.18593.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:529847..537431+ (Ectocarpus species6 EcLAC_371)back to top |