mRNA_Ecto-sp6_S_contig95.18559.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig95.18559.1
Unique NamemRNA_Ecto-sp6_S_contig95.18559.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig95.18559.1 vs. uniprot
Match: D8LU10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU10_ECTSI)

HSP 1 Score: 1045 bits (2702), Expect = 0.000e+0
Identity = 525/561 (93.58%), Postives = 535/561 (95.37%), Query Frame = 1
Query:   43 MEENVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEETCFSEIERGANCRKASDANQLPMNPQSCTFWCAIALGAVAKGNPVQSVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQMNWSSGEQQAMPQLNEAATEGELYRYVAQSLKAFEQGSHAIANEQRVKAGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGVMDGPGMRGGVGSLLVNMNLVFEKAATLDLDATLERIGRCIEVFERYPGLCRGTMGYHKAHMVLVWLAAIDDSRARAMYDRLRGSYNPFRRAGSRPVPLLEEWHGVATFCDDSYCRAIENIITSEPLTALAAPSVDGIDVCDGAKGTDNCKGEAALVGRWQAQAEKLSACTIPPTITDTASDRPTESGAECGSGLSVVSKSTIATPLSSQNACTQSKAGLISNGVENGTAIVAVAPESFPRFSQVGEGGDLTNDTEGDGAAAEDWLDVTYAMLRAL 1725
            MEE+VFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEET FSEIER ANCRKASD NQLPMNPQSCTFWCAIALGAVAKGNPV+SVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQ+NWSSGE+QAMPQLNEAATEGE+YRYVAQSLKAFEQG+HAIANEQRVKAGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGVMDG              NLVFEKAATLDLDATLER+GRCIEVFERYPGLCRGTMGYHKAHMVLVWLAAIDDSRARAMY+RLRGSYNPFRRAGSRPVPLLEEWHGVATFCDD YCRAIENIITSEP TALAAPS+DGIDVCDGAKGTDNCKGEAALVG WQAQ EKLSAC IPPTITDTASDRPTESGAECGSGLSVVSKS IATP+SSQNACTQS AGLISNGVENGT IVAVAPESFPRFSQV EGGDLTNDTEGDGAAAEDWLDVTYAMLRAL
Sbjct:    1 MEESVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEETRFSEIERRANCRKASDVNQLPMNPQSCTFWCAIALGAVAKGNPVESVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQINWSSGEEQAMPQLNEAATEGEIYRYVAQSLKAFEQGTHAIANEQRVKAGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGVMDG--------------NLVFEKAATLDLDATLERVGRCIEVFERYPGLCRGTMGYHKAHMVLVWLAAIDDSRARAMYNRLRGSYNPFRRAGSRPVPLLEEWHGVATFCDDVYCRAIENIITSEPFTALAAPSIDGIDVCDGAKGTDNCKGEAALVGSWQAQGEKLSACNIPPTITDTASDRPTESGAECGSGLSVVSKSPIATPVSSQNACTQSNAGLISNGVENGTTIVAVAPESFPRFSQVWEGGDLTNDTEGDGAAAEDWLDVTYAMLRAL 547          
BLAST of mRNA_Ecto-sp6_S_contig95.18559.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 548 bits (1413), Expect = 2.630e-186
Identity = 306/574 (53.31%), Postives = 374/574 (65.16%), Query Frame = 1
Query:    1 RFRVSASPATGLVGMEENVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEETCFSEIERGANCRKASDANQLPMNPQSCTFWCAIALGAVAKGNPVQSVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQMNWSSGEQQAMPQLNEAATEGELYRYVAQSLKAFEQGSHAIANEQRVKAGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGVMDGPGMRGGVGSLLVNMNLVFEKAATLDLDATLERIGRCIEVFERYPGLCRGTMGYHKAHMVLVWLAAIDDSRARAMYDRLRGSYNPFRRAGSRPVPLLEEWHGVATFCDDSYCRAIENIITSEPLTALAAPSVDGIDVCDGAKGTDNCKGEAALVGRWQAQAEKLSACTIPPTITDTASDRPTESGAECGSGLSVVSKSTI--ATPLSSQNACTQSKAGLISNGVENGTAIVAVAPESFPRFSQVGEGGDLTNDTEGDGAAAEDWLDVTYAML 1716
            RFR+SASPATGLVGM+EN FLSDFFGCVGF+PLT+ SHIRETMV +M +PAPLQQ AI G   E      + R     +AS+ NQLPM+  +CTFWCAIALGA+AKG+PV+SV KY  LA EAL KS     DAEVA AWAMLAY+ GFMGDLAR+QEYLA+SES  + +   G   TLPLGFAEVV   ++ ++ CGQ +      E+   PQ+ + A EGELY+YVA S KAFEQ     A  Q  +  +TP E E  G S+  R    A LP EIS AM T+ G      F PL+  +D P +RGG+GSLL+N  LVFEKAA  D  ATLERIGRC+EVFE YPG+CR T+ +HKAH++LV LAAI DS ARAMYDRLRGSYN FR + SRPVP  EEW G+  FCDD YCRA+E ++ S+ + A +APS+DG D+C   +GT +               +K S C  P  I      RP+E G   GSG ++ SK+ I  A P SS +A    K  + S+ +EN  A + +A ES PR  Q+  GG L  D E     AEDWLDVT+AML
Sbjct:  110 RFRLSASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVRIMASPAPLQQSAIGGACSE---VGTMVRAPCWNEASERNQLPMDASTCTFWCAIALGALAKGSPVESVAKYRHLAHEALTKSYPSSTDAEVATAWAMLAYMYGFMGDLARFQEYLALSESCLKCATAKGFVNTLPLGFAEVVLPVKIPNASCGQWETKSLDAEEYVPPQVADVAAEGELYKYVAHSFKAFEQAFQQKAYMQSARDVDTPGEAEGHGESDRNRWPASAFLPGEISEAMGTVFGDRNLLVFEPLEEAVDRPSIRGGIGSLLINGTLVFEKAAKGDRQATLERIGRCVEVFELYPGMCRCTIAHHKAHVMLVCLAAIGDSSARAMYDRLRGSYNSFRPSVSRPVPPWEEWQGLGAFCDDFYCRAMEGLVASDLMKAFSAPSLDGFDICVETQGTGS---------------DKSSTCDNPEKIIGAVPVRPSEVGG--GSGPTLASKTMIPVAPPASSHHAWCHMKTEIHSDRIENSLAHMTMADESLPRLPQLSAGGGLLEDNEDRSIFAEDWLDVTHAML 663          
BLAST of mRNA_Ecto-sp6_S_contig95.18559.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI)

HSP 1 Score: 539 bits (1388), Expect = 3.000e-184
Identity = 304/572 (53.15%), Postives = 368/572 (64.34%), Query Frame = 1
Query:    1 RFRVSASPATGLVGMEENVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEETCFSEIERGANCRKASDANQLPMNPQSCTFWCAIALGAVAKGNPVQSVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQMNWSSGEQQAMPQLNEAATEGELYRYVAQSLKAFEQGSHAIANEQRVKAGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGVMDGPGMRGGVGSLLVNMNLVFEKAATLDLDATLERIGRCIEVFERYPGLCRGTMGYHKAHMVLVWLAAIDDSRARAMYDRLRGSYNPFRRAGSRPVPLLEEWHGVATFCDDSYCRAIENIITSEPLTALAAPSVDGIDVCDGAKGTDNCKGEAALVGRWQAQAEKLSACTIPPTITDTASDRPTESGAECGSGLSVVSKSTIATPLSSQNACTQSKAGLISNGVENGTAIVAVAPESFPRFSQVGEGGDLTNDTEGDGAAAEDWLDVTYAML 1716
            RFR++ASPATGLVGM+EN FLSDFFGCVGF+PLT+ SHIRETMV++M +PAPLQQ AI G +        + R     KAS+  QLPM+P +CTFWCAIALGA+AKG PV+SV KY  LA EAL KS    ADAEVA AWAMLAY+ GFMGDLA++QEYLA+SESF +S+     T TLPLGFAEVV   ++ ++ CGQ +      E++  PQL + A EGELY+Y+AQS KAFEQ     A +Q  +  ETP E E  G S+  R    ALLP EIS AM T+ G      F PL+  +D                LVFEKAA  D  ATLERIGRC+EVFE YPG+CR T+ +HKAH++LV LAAI DS ARAMYDRLRGSYN FR AGS PVP LEEW GV  FCDD YCRA+E ++ S+ + A +AP VDG DVC GAKGT +               +KLS C  P     T   RP+E G   GS L+      +A P SS +A    KA   S+ +E+  A++ +A ES PR  Q+ EG  L  D E     A+DWLD T+AML
Sbjct:    6 RFRLTASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVKIMASPAPLQQSAIGGAFGG---VGSMVRARCWNKASEKPQLPMDPSTCTFWCAIALGALAKGCPVESVAKYRHLAHEALTKSYPSSADAEVATAWAMLAYVYGFMGDLAKFQEYLALSESFLKSATAKRCTDTLPLGFAEVVLPVKIPNASCGQWETKSLDAEERVPPQLADVAAEGELYKYIAQSFKAFEQAFQQKAYKQSARDVETPGETEGHGESDRNRRRPSALLPGEISEAMGTVFGDRNLLVFEPLEEAVD--------------RTLVFEKAAKGDRRATLERIGRCVEVFELYPGMCRCTISHHKAHIMLVCLAAIGDSSARAMYDRLRGSYNSFRPAGSLPVPPLEEWQGVGAFCDDFYCRAMEGLVASDLMKAFSAPCVDGFDVCVGAKGTGS---------------DKLSTCDNPEENIGTVPVRPSEGGGGSGSTLAST-MIPVAPPASSHHAWCHLKAEFHSDQIESSVALMTMADESLPRLPQLSEGSGLLEDNEDRSIFADDWLDATHAML 544          
BLAST of mRNA_Ecto-sp6_S_contig95.18559.1 vs. uniprot
Match: D8LCW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW5_ECTSI)

HSP 1 Score: 474 bits (1220), Expect = 6.520e-159
Identity = 270/564 (47.87%), Postives = 352/564 (62.41%), Query Frame = 1
Query:   43 MEENVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEETCFSE-IERGANCRKASDANQLPMNPQSCTFWCAIALGAVAKGNPVQSVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQMN-WSSGEQQAMPQLNEAATEGELYRYVAQSLKAFEQGSHAIANEQRVKAGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGVMDGPGMRGGVGSLLVNMNLVFEKAATLDLDATLERIGRCIEVFERYPGLCRGTMGYHKAHMVLVWLAAIDDSRARAMYDRLRGSYNPFRRAGSRPVPLLEEWHGVATFCDDSYCRAIENIITSEPLTALAAPSVDGIDVCDGAKGTDNCKGEAALVGRWQAQAEKLSACT-IPPTITDTASDRPTESGAECGS-GLSVVSKSTIATPLSSQNACTQSKAGLISNGVENGTAIVAVAPESFPRFSQVGEGGDLTNDTEGDGAAAEDWLDVTYAMLRA 1722
            M+EN FLSDFFGC GFLPL T SHIRETMV++M  PA  QQP +    DE   + E + RG +  K S  N+LPM+P +CTFWCA+ALGA+AKG+P++SV  Y++LAQ AL  S S PAD EVAKAW +LA L GFMGD+  +++YLA+S+SF  SS+E GST  LP+GFAE+VKF E +++ CG+  +  +S  E    PQL+  ATE ELY+YVAQS +AFE+  +  A EQ  + G+  C+ E  GR +G RPS +  +  ++SNAM  L+ +G C  F PL+  +D P +RGG+G+LL+N  LVFEKAA  DL ATLERIGRCIEV ERYPGLCR  +G H  HM+L+ L A  DS ARAMYDR+RG++N  R +G  PVP  EEW GV  FCD   CRAIE ++ S  + A +A  VDGID+CD  +GT +   +  L G    + E L A   IP TI  TA    T  GAE     L   ++    +P+SS +AC Q          +     +A + E+  +   + E          D  A EDWLD   A+  A
Sbjct:    1 MQENAFLSDFFGCNGFLPLATPSHIRETMVKIMLPPASSQQPVLGDDCDEGGHYFEAVARGGDLSKTSAGNRLPMDPSACTFWCAVALGALAKGSPIESVTSYARLAQAALANSNSDPADTEVAKAWVILANLHGFMGDMEGFEKYLALSDSFVTSSIEEGSTDALPVGFAEIVKFKEFANASCGEWPLECFSVQENNPPPQLSVVATEAELYQYVAQSCRAFERAVYTTATEQSARGGDM-CDSESHGRPDGVRPSPQDFMAGDLSNAMGVLLENGSCIHFEPLEEAVDRPSIRGGIGALLINGILVFEKAAKGDLRATLERIGRCIEVLERYPGLCRCMIGCHMTHMMLICLVAAGDSSARAMYDRVRGAFNSHRPSGYLPVPPFEEWCGVDAFCDHRCCRAIEGLVKSGNMRAFSAAPVDGIDICDERRGTGSVIDDDVLHGHGHTEHEILPAPNNIPGTIVGTAPVWSTNRGAEGDMRSLPPPTQPPAFSPVSSSHACCQ----------DEPIRWLAESSEADGKIEHMDE----------DDVAEEDWLDAARAISDA 543          
BLAST of mRNA_Ecto-sp6_S_contig95.18559.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 4.840e-153
Identity = 274/575 (47.65%), Postives = 315/575 (54.78%), Query Frame = 1
Query:    1 RFRVSASPATGLVGMEENVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEETCFSEIERGANCRKASDANQLPMNPQSCTFWCAIALGAVAKGNPVQSVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQMNWSSGEQQAMPQLNEAATEGELYRYVAQSLKAFEQGSHAIANEQRVKAGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGVMDGPGMRGGVGSLLVNMNLVFEKAATLDLDATLERIGRCIEVFERYPGLCRGTMGYHKAHMVLVWLAAIDDSRARAMYDRLRGSYNPFRRAGSRPVPLLEEWHGVATFCDDSYCRAIENIITSEPLTALAAPSVDGIDVCDGAKGTDNCKGEAALVGRWQAQAEKLSACTIPPTITDTASDRPTESGAECGSGLSVVSKSTIATPLSSQNACTQSKAGLISNGVENGTAIVAVAPESFPRFSQVGEGGDLTNDTEGDGAAAEDWLDVTYAMLRAL 1725
            RF +SASPATGLVGM+EN FLSDFFGCVGFLPLTTQSHIRETMV +M +PA ++Q  + G +     F  I  G    KAS  +QLPMNP +CTFW                                          AWA++ YL GFMGD ARYQ YLA+SESF RSS+E  ST  LP+GFAEVVKF E +DS CGQRQM   + E+Q  PQ                                                    R  RR                                P +RGG+GSLL+N+ LVF K A  DL+A LER+GRC+ VFERYPGLC GTMGYH AH+VLV LAAI D RARAMYD LR +YN FR AGS PVP LEEWHGV  FCDD YCRAIE ++ SE +T  +APSVD IDV DG  GTD+   +  L G  Q+Q    SAC     + DT SD PTE GAE   G SV S S  A P+ S   C QS+ GL SN VE   A VA+APE   R  ++ E G    D E DG  AEDWLDVT+AML AL
Sbjct:  109 RFGLSASPATGLVGMQENAFLSDFFGCVGFLPLTTQSHIRETMVNIMVSPA-IRQSFVGGDFGAGGPFDSIAGGVEWSKASGGHQLPMNPSTCTFW------------------------------------------AWAIMGYLYGFMGDSARYQHYLALSESFLRSSMEERSTDNLPVGFAEVVKFKEFADSSCGQRQMKSFNAEEQTNPQ---------------------------------------------------RRCHRR--------------------------------PTIRGGIGSLLINLTLVFVKGAKGDLNAALERVGRCVAVFERYPGLCSGTMGYHNAHIVLVCLAAISDPRARAMYDSLRATYNSFRPAGSLPVPPLEEWHGVDVFCDDCYCRAIEQLVASEHITTFSAPSVDTIDVGDGTNGTDSDHADETLPGHGQSQPAWPSACNTSQMVIDTVSDWPTERGAEHRRGSSVGSTSPTARPVCSNYLCYQSEDGLHSNRVEASFASVAMAPEPLSRIKELSEDGGWMEDREDDGVGAEDWLDVTHAMLGAL 557          
BLAST of mRNA_Ecto-sp6_S_contig95.18559.1 vs. uniprot
Match: D8LCU9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU9_ECTSI)

HSP 1 Score: 419 bits (1078), Expect = 2.160e-136
Identity = 247/549 (44.99%), Postives = 326/549 (59.38%), Query Frame = 1
Query:   85 GFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDE-ETCFSEIERGANCRKASDANQLPMNPQSCTFWCAIALGAVAKGNPVQSVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQM-NWSSGEQQAMPQLNEAATEGELYRYVAQSLKAFEQGSHAIANEQRVKAGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGVMDGPGMRGGVGSLLVNMNLVFEKAATLDLDATLERIGRCIEVFERYPGLCRGTMGYHKAHMVLVWLAAIDDSRARAMYDRLRGSYNPFRRAGSRPVPLLEEWHGVATFCDDSYCRAIENIITSEPLTALAAPSVDGIDVCDGAKGTDNCKGEAALVGRWQAQAEKLSAC-TIPPTITDTASDRPTESGAECGSGLSVVSKSTIATPLSSQNACTQSKAGLISNGVENGTAIVAVAPESFPRFSQVGEGGDLTNDTEGDGAAAEDWLDVTYAMLRA 1722
            G LP   +SHIRETMV++M  PA  QQP +    DE E  F  +  G +  K S  NQL M+P +CTFWCA+ALGA+ KG+P++SV  Y+QLA+EAL  S SGP +AEVAKAW +LA L GFMGD  R+++YLA+S SF RSS+E GS  TLP+GFAE+VKF ++++  CG+ QM ++    +   PQLNEAATE ELYRYV++S  AFE+  +    EQ    G   C+ E  GR  G  P       ++ S A+ +L+  G   +FGPLQ  +D   +R G+G L ++   + E AA  DL AT ER+GRCIEV ERYPGLCR  +G H  H++L+ LAA  DS  RA+YDRLR   N FR  GS+PVP   EW GV  FCD+ +CR+IE ++    +     P ++GID   G   T +   E A  G    Q E L+A  +IP  I  TA   PT+SG E      +  ++   +P+SS++A  QS+AGL S GV  G   V     S     +  E      DT  DG   EDWLD  +A+  A
Sbjct:   76 GVLPF--KSHIRETMVKIMLPPASSQQPVLGDNCDEGERYFEAVAPGGDLSKISAGNQLAMDPSACTFWCAVALGALVKGSPIESVTSYAQLAEEALANSNSGPGNAEVAKAWVILANLHGFMGDKERFEKYLALSGSFLRSSIEQGSIDTLPVGFAEIVKFKDIANVSCGEWQMESFPVQGENLPPQLNEAATEAELYRYVSRSCVAFEEAIYTTMIEQSESGGNGLCDSEPHGRPGGVLPLPEDFTASDFSKALKSLLDDGDGIDFGPLQEAVDRSSIRRGIGVLFIDGPCIVETAAKGDLHATRERMGRCIEVLERYPGLCRCMIGCHMTHVLLMCLAAAGDSSDRAVYDRLRVISNSFRPPGSQPVPSFVEWRGVGAFCDEIFCRSIEVLVPCGHMRPFLEPPIEGIDADFGTSATGSDIDEGAPHGHGYTQRESLTAFNSIPGKIIGTAPVWPTDSGVESDIVPFLAPRAQPTSPISSRHAFGQSEAGLYSVGVARG---VTTPEPSLLGLLESTERDRKPEDTGEDGIVEEDWLDAAHAISDA 619          
BLAST of mRNA_Ecto-sp6_S_contig95.18559.1 vs. uniprot
Match: D8LU08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU08_ECTSI)

HSP 1 Score: 414 bits (1064), Expect = 1.770e-135
Identity = 235/459 (51.20%), Postives = 290/459 (63.18%), Query Frame = 1
Query:    1 RFRVSASPATGLVGMEENVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEETCFSEIERGANCRKASDANQLPMNPQSCTFWCAIALGAVAKGNPVQSVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQMNWSSGEQQAMPQLNEAATEGELYRYVAQSLKAFEQGSHAIANEQRVKAGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGVMDGPGMRGGVGSLLVNMNLVFEKAATLDLDATLERIGRCIEVFERYPGLCRGTMGYHKAHMVLVWLAAIDDSRARAMYDRLRGSYNPFRRAGSRPVPLLEEWHGVATFCDDSYCRAIENIITSEPLTALAAPSVDGIDVCDGAKGTD--NCKGEAALVG 1371
            RFR+SASPA GLVGM+EN FL+DFFGCVGFLPLTTQ HIRETMV+MM +PA  +Q A                G +C +A + N L M P +C FWCA+ALGA+        V KYS+LAQ+AL  S  GPAD EV KAWA+LAYL GFMG+                            LGFAE+VK  ++++S CGQ +      ++QA PQL EAATE ELY+YVAQS +AFEQ  H  A+     AG+  C+   DGRS+    S   LLP E++NAM T+  SG   +F PL+  +D P +RGG+GSL VN  LVF+KAA  D+   L+R+GRC+++FERYPGLCR  +G H AHM+LV LAAI D RA+AMYDRLR SYN  R +GSR VP LEEWHGV  FCDD YCRAI+  + +  L A +AP V+ ID     +G D    KGE A  G
Sbjct:  107 RFRLSASPAIGLVGMQENTFLTDFFGCVGFLPLTTQRHIRETMVKMMASPASRRQSAA---------------GTDCDEAPELNLL-MGPSTCIFWCAVALGAL--------VSKYSELAQKALATSYPGPADLEVGKAWAILAYLYGFMGN----------------------------LGFAEIVKHKDIANSSCGQWEKKSFCAQEQATPQLKEAATEVELYQYVAQSFRAFEQTVHVTASINSATAGDHLCQAASDGRSDTLLQSDHVLLPGEVANAMGTVSASGNFLDFEPLEEAVDRPSVRGGIGSLQVNSTLVFKKAAKGDVHGALKRVGRCVQIFERYPGLCRSMIGCHLAHMMLVSLAAIGDPRAQAMYDRLRESYNSCRPSGSRLVPPLEEWHGVVAFCDDVYCRAID--LFAHKLKAFSAPPVNSIDAPVETEGADADRAKGETAHEG 511          
BLAST of mRNA_Ecto-sp6_S_contig95.18559.1 vs. uniprot
Match: D8LU13_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI)

HSP 1 Score: 399 bits (1024), Expect = 1.230e-130
Identity = 216/361 (59.83%), Postives = 248/361 (68.70%), Query Frame = 1
Query:    1 RFRVSASPATGLVGMEENVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEETCFSEIERGANCRKASDANQLPMNPQSCTFWCAIALGAVAKGNPVQSVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQMNWSSGEQQAMPQLNEAATEGELYRYVAQSLKAFEQGSHAIANEQRVKAGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGVMDGPGMRGGVGSLLVNMNLVFEKAATLDLDATLERIGRCIEVFERYPGLCRGTMGYHKAHM 1083
            R R+SASPA GLVGM+E+ FLSDFFGCVGFLPLTT+S IRE MV++M  PA LQ+PA+ G  DEE  F  I RG +   AS+ +Q PMNP+SCTFWCAIALGA+AKG+P +SV KYSQLA EAL KS SGPADAEVAKAWAMLAYL GFMGDL R+QEY AVSES FRSS++ GST  LP+GFAEVV FT   D C GQRQ   SS E+Q MPQLNEA TE                     A E+    GE+PC+ ERDGR  GARP   ALLP +IS AM  ++ SGGC  F PL+  +D               NL F KAA  D+ ATLERIGRC+EV+ERYPG+CR TMG   A M
Sbjct:  105 RLRLSASPAVGLVGMQESAFLSDFFGCVGFLPLTTRSTIREAMVQIMATPATLQRPAVGGGCDEEALFDAIARGEDLINASEGHQHPMNPRSCTFWCAIALGALAKGSPFESVAKYSQLAHEALAKSKSGPADAEVAKAWAMLAYLHGFMGDLERHQEYKAVSESLFRSSIDRGSTDNLPVGFAEVVSFTAFDDPCGGQRQRKSSSAEEQGMPQLNEAVTE---------------------AQERSTTTGESPCKAERDGRLEGARPFHDALLPKDISTAMVAVLESGGCPNFEPLERAVD--------------RNLAFTKAAKGDVHATLERIGRCVEVYERYPGVCRDTMGADCAFM 430          
BLAST of mRNA_Ecto-sp6_S_contig95.18559.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 376 bits (965), Expect = 6.940e-119
Identity = 240/593 (40.47%), Postives = 326/593 (54.97%), Query Frame = 1
Query:    1 RFRVSASPATGLVGMEENVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEETCFSEI--ERGANCRKASDANQLPMNPQSCTFWCAIALGAVAKGNPVQSVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQ---MNWSSGEQQAMPQLNEAATEGELYRYVAQSLKAFEQ--GSHAIANEQRVK--AGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGVMDGPGMRGGVGSLLVNMNLVFEKAATLDLDATLERIGRCIEVFERYPGLCRGTMGY-HKAHMVLVWLAAIDDSRARAMYDRLRGSYNPFRRAGSRPVPLLEEWHGVATFCDDSYCRAIENIITSEPLTALAAPSVDGIDVCDGAKGTDNCKGEAALVGRWQAQAEKLSACTIPPTITDTASDRPTESGAECGSGLSVVSKSTIATPLSSQ-----------NACTQSKAGLISNGVENGTAIVAVAPESFPRFSQVGEGGDLTNDTEGDGAAAEDWLDVTYAML 1716
            RFR+SASPATGLVGM+EN FLSDFFGCVGFLPLTT SHIR  MV MMT      Q   +    E+  F  I  E G      +  +QL   P +CTFWCA+ +GA+  G+PV+ V  YS LA++AL  + +GP +AEVAKAWA+L Y  GFMGD   +QEYL +S+SF   S+E GST  LP GFAE+++  +      G      +++    ++  PQ N AATE +++RYV QS  AFEQ        N   ++  + + PCED+    S    P +      E+S+AM T +  G   +F  LQ  +D   +R G+G LL+NMNL  +KA   D    LER+  C+EVFERYPG+CR  M + H +H +L  LAAI+DSRAR +YDRLR  YNP R + S P P LEEW G++ FCDD  CR  E II S+ L+  + P++   + C G++G   CK +       Q     + A  I    T T  D P  +G +  S  S    +    P  S            + C   +  +   G    + +VA  PE   R+ ++ +   ++ +T  D     DWLDVT+AML
Sbjct:   98 RFRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHQLGASYDSPEQCQFDAILTEDGI-----TTGSQLSTGPSACTFWCAVGVGALVNGSPVELVGNYSGLARDAL-NAYTGPVNAEVAKAWAILGYFYGFMGDTTTFQEYLGLSDSFLTDSIERGSTDILPAGFAEIIRHKQTVKVYAGNLDAAYIDFLGARRRDPPQANPAATELDVFRYVTQSHTAFEQLVFEKVCENSATIRPLSDDEPCEDDGGCGSPHGNPPQAE----EVSDAMVTGLRDG-LIDFEHLQEAVDRSNIRQGIGGLLINMNLALQKAGKGDAGGALERLRHCVEVFERYPGVCRCMMLWCHVSHSILGALAAINDSRARELYDRLRNVYNPSRSSDSLPAPPLEEWRGMSAFCDDFQCRCFEGIIASQALSVFSTPTLCASN-CAGSQGAQ-CKEDYLQAADEQHHTSIVPAGVILENATGTMMDAPCSNGDKPMSSTSSWELNQKPAPQMSPPVGPSLSTSHVHCCEPDRGAVEGCGGGGVSGVVAPVPEMSLRWPELRQVDGVSEETGDDTIVTADWLDVTHAML 677          
BLAST of mRNA_Ecto-sp6_S_contig95.18559.1 vs. uniprot
Match: D8LU24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 2.140e-118
Identity = 242/609 (39.74%), Postives = 329/609 (54.02%), Query Frame = 1
Query:    1 RFRVSASPATGLVGMEENVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEETCFSEIERGANCRKASD-----ANQLPMNPQSCTFWCAIALGAVAKGNPVQSVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFMGDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQRQ---MNWSSGEQQAMPQLNEAATEGELYRYVAQSLKAFEQGSHAIANEQ----RVKAGETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMG-SGGCTEFGPLQGVMDGPGMRGGVGSLLVNMNLVFEKAATLDLDATLERIGRCIEVFERYPGLCRGTMGY-HKAHMVLVWLAAIDDSRARAMYDRLRGSYNPFRRAGSRPVPLLEEWHGVATFCDDSYCRAIENIITSEPLTALAAPSVDGIDVCDGAKGTDNCKGEAALVGRWQAQAEKLSACTIPPTITDTASDRPTESGAECGSGLSVVSKSTIATP-----------LSSQNACTQSKAGLISNGVENGTA----------IVAVAPESFPRFSQVGEGGDLTNDTEGDGAAAEDWLDVTYAMLRA 1722
            RFR+SASPATGLVGM+EN FLSDFFGCVGFLPLTT SHIR  MV MMT      +P        +  +  +++G      S+      NQL   P +CTFWCA+ +GA+ KG+PV+SV  YS+LA++AL  + +GP +AEVA AWA+L Y  GFMGD A +QEYL +++SF   S+E GST  LP GFAE+++  +      G      +++    +   PQ+N AA EG+L+RY +QSL AFE+     A E+    R  + + P E++R G S    P   A    ++S+AM  +MG   G  +F  LQ  +D   +R G+G LL+NM L F+KA   D    LER+G C+E FERYPG+CR  M + H +H +L  LAAI  SRAR +Y+RLR  YNP R A   P P LEEWHG ++FCDD  CR  E II S       APS    +  D  +   NC  +   V   +     +SA  IP     +  D P  +G +  +  S+   +    P            S  + C     G     + +G            +VA  P+   R  ++ +   +  +T  D  AA DWLDVT+AML A
Sbjct:   25 RFRLSASPATGLVGMQENTFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHRP--------DASYDSLDQGQFGAIFSEDGITTGNQLSAGPSACTFWCAVGVGALVKGSPVESVANYSRLARDALD-AYTGPVNAEVAMAWAILGYFYGFMGDTATFQEYLGLADSFLTDSIERGSTNILPAGFAEIIRLEQTVKVYTGHLDAAYIDFLGSRRGDPPQVNPAANEGDLFRYFSQSLNAFEELVFEKACEKSSIRRHLSDDEPWEEDRGGGS----PHGAAPQAEDVSDAM--VMGLQDGLIDFEHLQETVDRSNIRKGIGGLLINMYLAFQKAGKGDAGGALERLGHCVEAFERYPGVCRCMMLWCHASHSILGALAAIKSSRARELYNRLRDVYNPSRPASFLPAPPLEEWHGTSSFCDDFQCRCFEGIIASRARNLFPAPSDCTSNNTD--QQQTNCTEDYLEVVDEEHDGSIISAGVIPEKAIGSIMDAPCSNGDKPMASTSLWELNQEPAPQMGPPVGPSLSTSHVHCCGPDTGGGSGTDIYSGAVEGCGGGVLAGLVAPVPDMSLRLPELTQVDGVPEETGDDTIAAADWLDVTHAMLGA 616          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig95.18559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU10_ECTSI0.000e+093.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYW4_9PHAE2.630e-18653.31Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU09_ECTSI3.000e-18453.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCW5_ECTSI6.520e-15947.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU16_ECTSI4.840e-15347.65Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LCU9_ECTSI2.160e-13644.99Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU08_ECTSI1.770e-13551.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU13_ECTSI1.230e-13059.83Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JBJ1_9PHAE6.940e-11940.47Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU24_ECTSI2.140e-11839.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig95contigEcto-sp6_S_contig95:7558..12572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1728
Hectar predicted targeting categoryother localisation
Exons11
Cds size1728
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig95.18559.1prot_Ecto-sp6_S_contig95.18559.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig95 7558..12572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350580.96185-CDS-Ecto-sp6_S_contig95:7557..76671682350580.96185-CDS-Ecto-sp6_S_contig95:7557..7667Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 7558..7667 +
1682350580.9709823-CDS-Ecto-sp6_S_contig95:7884..81101682350580.9709823-CDS-Ecto-sp6_S_contig95:7884..8110Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 7885..8110 +
1682350580.9785862-CDS-Ecto-sp6_S_contig95:8308..83851682350580.9785862-CDS-Ecto-sp6_S_contig95:8308..8385Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 8309..8385 +
1682350580.986513-CDS-Ecto-sp6_S_contig95:8639..86851682350580.986513-CDS-Ecto-sp6_S_contig95:8639..8685Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 8640..8685 +
1682350580.9950068-CDS-Ecto-sp6_S_contig95:8913..89971682350580.9950068-CDS-Ecto-sp6_S_contig95:8913..8997Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 8914..8997 +
1682350581.0040972-CDS-Ecto-sp6_S_contig95:9284..93831682350581.0040972-CDS-Ecto-sp6_S_contig95:9284..9383Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 9285..9383 +
1682350581.0139985-CDS-Ecto-sp6_S_contig95:9656..99221682350581.0139985-CDS-Ecto-sp6_S_contig95:9656..9922Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 9657..9922 +
1682350581.0237117-CDS-Ecto-sp6_S_contig95:10148..101901682350581.0237117-CDS-Ecto-sp6_S_contig95:10148..10190Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 10149..10190 +
1682350581.033903-CDS-Ecto-sp6_S_contig95:10558..106721682350581.033903-CDS-Ecto-sp6_S_contig95:10558..10672Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 10559..10672 +
1682350581.0440338-CDS-Ecto-sp6_S_contig95:11645..118251682350581.0440338-CDS-Ecto-sp6_S_contig95:11645..11825Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 11646..11825 +
1682350581.0542495-CDS-Ecto-sp6_S_contig95:12088..125721682350581.0542495-CDS-Ecto-sp6_S_contig95:12088..12572Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig95 12089..12572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig95.18559.1

>prot_Ecto-sp6_S_contig95.18559.1 ID=prot_Ecto-sp6_S_contig95.18559.1|Name=mRNA_Ecto-sp6_S_contig95.18559.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=576bp
RFRVSASPATGLVGMEENVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAP
APLQQPAIAGIWDEETCFSEIERGANCRKASDANQLPMNPQSCTFWCAIA
LGAVAKGNPVQSVEKYSQLAQEALPKSVSGPADAEVAKAWAMLAYLCGFM
GDLARYQEYLAVSESFFRSSVEHGSTGTLPLGFAEVVKFTEVSDSCCGQR
QMNWSSGEQQAMPQLNEAATEGELYRYVAQSLKAFEQGSHAIANEQRVKA
GETPCEDERDGRSNGARPSRRALLPTEISNAMSTLMGSGGCTEFGPLQGV
MDGPGMRGGVGSLLVNMNLVFEKAATLDLDATLERIGRCIEVFERYPGLC
RGTMGYHKAHMVLVWLAAIDDSRARAMYDRLRGSYNPFRRAGSRPVPLLE
EWHGVATFCDDSYCRAIENIITSEPLTALAAPSVDGIDVCDGAKGTDNCK
GEAALVGRWQAQAEKLSACTIPPTITDTASDRPTESGAECGSGLSVVSKS
TIATPLSSQNACTQSKAGLISNGVENGTAIVAVAPESFPRFSQVGEGGDL
TNDTEGDGAAAEDWLDVTYAMLRAL*
back to top

mRNA from alignment at Ecto-sp6_S_contig95:7558..12572+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig95.18559.1 ID=mRNA_Ecto-sp6_S_contig95.18559.1|Name=mRNA_Ecto-sp6_S_contig95.18559.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5015bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:7558..12572+ (Ectocarpus species6 EcLAC_371)
AGGTTCAGGGTTAGTGCATCTCCGGCGACCGGTCTCGTGGGAATGGAGGA GAACGTCTTCCTCAGCGACTTCTTCGGCTGCGTTGGTTTTCTTCCGCTTA CCACCCAGAGGTGTCGCATGCAATGTCCTTTGGAATGCATTGTACACTAG GTAGGACGAGCTGCTGCCATAGCCTGCTGCAACGTTTGCCGTTGGCTCAA GTAATTTAAGCAGCGTCTGCATGGCGCGGTATTCATGTGGGTCTGTGGTG TCAGTGTTTCCCGTAGTGCCATCCCCTACCATCGCCCGACCCGTGATATC CTTGCGGCGTTTTTGTTCCTTGGCCAGTCACATTCGCGAGACGATGGTGG AGATGATGACAGCCCCGGCCCCTCTCCAGCAGCCAGCCATTGCGGGCATC TGGGACGAGGAAACGTGTTTCAGTGAAATCGAACGAGGGGCGAACTGCAG GAAGGCCTCGGATGCGAACCAGCTTCCGATGAATCCGCAGTCTTGCACTT TCTGGTGTGCAATTGCTCTAGGAGCAGTGGCGAAGGGCAATCCCGTCCAA TCGGTGCGAAGGGGCGTCGTTGCTGCATGTGTTGGTGAAAACGGGTTTCG TTTCATGACCGTGAATCAGGGTTCCTTCCGCCCGTTGTGACTACATGCCA TTGGAATTCCTAAATGGTGCGCTGCAGATATTTCTTTTGTAAATTGTTAC AATTGCTTGCTCATGCCACAGACGTCCAGCCCCGCTGATGCTCGGTAACA GGTGGAGAAGTACTCTCAGCTGGCCCAAGAAGCGCTGCCAAAGAGCGTCT CGGGTCCCGCGGACGCTGAGGTCGCGAAGTGAGTCACTATAGGATAACCT CCTTCAACAACGCCGCCGCTCTTGCCTTTTGGGACCGTCTTTTGCCACGC ATTCCTGGCATAAGAATTTCGGCCTCTGCTCACTATAGTCGGCCTCTGCT CACTCTAAATTCCAAGGTACAACGTGATGCTCACGTTCCCGGGAGGTTTG CCAAACTTATCCGATGATTAGGGCTCCAGTAACAAGCTTATTCACGCCAA TTGTTCCTTTGCTCCTCTTTTTTCCTACCCAGGGCGTGGGCAATGCTGGC CTACCTGTGCGGCTTTATGGGGGACTTGGTGAGGACCTCCCCGTGGCACT TATTGTCGGGAAAGAATGCGCTTCATTGTTGACCGTCGTGAAATCGTTCT GATTCTCTTTATGAAAGCAGCCGGGGTGCGTAATATTGCAATGTGGTCGG TTCGATACAGTGCTTGCAACATGCTGAGACTGCTCTGCCTAGACCTACTT CTCTTCATTAATTTTATCCAACGTGCTTCGGTTCGACCATTACCCCAATG TTACAGGCAAGGTATCAAGAGTACCTGGCTGTGTCGGAGTCTTTTTTCAG GAGTTCTGTCGAACACGGGTCCACCGGTACGCTTCCATTGGTGAGAACAA CGTTTCCCACCCGTTTAGGGTGCTAAGAATGACGAATGACTGGGGTGGGA AGACCTTGCCTCCTCTTCGCTTCCCTCTGCAGTTACGAGTGTAGCACATC AATTCCGGCGACGAAAGGCTCTTTTCGCGGTCAGAGAACCCCCTGAGCGA AAAGACGGTGCTGGCACGAACGATATTGTATGATGGCGCGTTCCTCTCCG CTCTTGATGCTATGGGCTGAGCAGCTGCCGATATCGCTGACGTATCTATA TTTCCCATGCGGATGTACGCCGCGCAGGGATTCGCGGAGGTTGTCAAGTT TACAGAGGTATCTGATTCTTGCTGCGGGCAGCGGCAGATGAATTGGTCTA GCGGCGAACAGCAAGCGATGCCGCAGGTGCGTGAGTCGGTTGCATCGCGG AGCCGTCGGCCGATGAGCCCTTTGAACCACACCTTGCTGCACGGAACCGA AGCACCGAGAGTATTTCACGTGATTGTTTACTGTCTTCCGAGAAGCTTCT GCACCGGGCATGGTCATTGCATGATGGACATACACTTTCAGCATGTAGAG TGGCATTCTGAAAGTCACTTCTTTCTCTTCTGGCCAGCGCCACGTCCCGT GCTTTCTGACCCACTTTCGCCCACTACCCTTGCTGCCCTGCATTCCCAGT TGAATGAAGCTGCCACCGAGGGCGAGTTATATCGGTATGTCGCTCAATCG TTAAAAGCTTTCGAGCAGGGCTCCCACGCAATAGCGAATGAGCAGAGAGT GAAGGCGGGCGAGACCCCATGCGAGGACGAGCGTGATGGACGATCTAATG GAGCCCGCCCATCCCGACGTGCCCTTCTGCCAACGGAGATTTCAAACGCT ATGAGTACTTTGATGGGAAGTGGGGGCTGTACCGAATTCGGGCCGCTTCA AGGAGTGATGGATGGGTGAGTCAAAAGATATGATGTAAACACCAGTGAAC ACACCTCCACCGAGACCACGGAGCCGTGAGGGTGATTATCGGGGTCATTC AGGCGCGAGCACTGTTTGGCCTGGATATTCAGGACGGCTTTCCTCCTTCT ATTGGCTCACATGTTCCCATACGCTCGTTGTTGTGCATCGTACTTGCAAC CGGCATGCATGTTGACATGGATGTGGTCACTCTGGCAATAGACCTGGTAT GCGTGGTGGTGTCGGCAGCCTTCTCGTCAACATGTAAGTGGGCGATGGGT TGGATATGTTATACGTAGGTGCCCATCCAAGACTATGATTTCCGAAATAA GCCCCAACTTTGGTCGATACGAGACGCTGAAATGATGTCTCAGTTGGTGT TTCAGTGACCGTGTGCGTCAAATGTGATAAAAATCAGCCTGAGGTTGTTA CTGTTGTTCTCAAGCACCTTCCGATCCAAAGTGGCGATAATATATTTGCA CTTTGGCGACTGCCGATCGAAATTGGCGCTGTGGCGCTTAGAATGCATTT TTCGGCCAACACAGTTGCTTGCTCGTTTTCAACGAGATAGATTTTCTCAC GGGGAACGTCTTCGCCCCCTATCTTATCCTGGAAACTACCGTATTCGGCA GGAACCTTGTGTTTGAAAAGGCAGCAACGCTCGATCTCGATGCCACCCTG GAGAGAATTGGCCGCTGCATTGAGGTTTTTGAACGGTATCCTGGCTTGTG CCGCGGCACCATGGGGTGAGTCGCTTCGTGCACCCTGCGCTCATGTAGCG GTTGCTTTGGTTGATGTTCTTTGGGAATCCTCAGATTGGGGTCGACAGAC TGCGTGAGCTACTGTGCGTCCGCTTCCCCTTTCTTCGGGTCTTGGGCTAT TACGAAAGCAATATATCAAGAGGAAACTTCGTTTGATCAAATTCGTAGTG AACGGGAGGCATTTCAACCTGGGCAAAGGTGCTCTACGACATAACCTATC AGCGATAATGTCCGTGCTTGGATGGCGCCTTTCGGTGGACTCCTGGCATA TTCGTCATGAATCCTGAGCAGCGCGTAGTAGTTTTTCCTTCGTCTACGAT GTGCCCACTCTTTTTGTGCTAGCTCGTAGTTATCTCTGTTGATATATTCC TAACTGGGGCTTGTATGGCCGTTGTTCATTCGCTGGTCATCTTCTCCCCT ATTGGTTCTACTGCAGCAGCATTAGTGTGCCCCCCACCTCCTGCGACTTG GATGTGTCAGGGATGCTTGCCTCTTTTGCGATTAATCGCTCTCTTGTTCG CCTGATCCTAACAGTAGCACGGGTGCAGCAGATACATATCTGCGATTGAG GTTCCCACATGGCAATGGGTTTTGATTTGTTAAACATTTTATGGGTTTTA GTCATGCACTAGAATGCGTTTTGGTGCTTTCGTTGAGCACATTTTGTTTC TTGGCGCGAGTGTGCTAGAGTTCCTCCGGATCTGTTCAATCTTGCGGGAA TGGAAGCCCGGTTTCTCTGTGCTCGACGAGTAGAGAAGACCAGGTGCTAG GCAGTTTGACGAGCGACCAAAAAAGAGAAACTAAAACTGGACGGGGATTC GAGGGGTGTTGAAGCGAGACAACACAGCATGGATACAGTAGAGTGGACCT GTCATGGTGGTCGCTGCATGCTCTACAAAGCGACTTCCGCAAATGCCTTC TTTTCTCAAGCCCCCCGCTACTGGCGTGTCCATGAAAGGTACCACAAGGC ACATATGGTGCTGGTCTGGCTCGCAGCGATTGATGACTCCAGAGCTCGAG CGATGTACGACAGGTTGCGCGGTTCATACAATCCATTTCGCCGTGCTGGC TCGCGGCCCGTACCCCTGTTGGAGGAGTGGCACGGAGTGGCTACTTTTTG CGACGATTCTTATTGCAGGTATGTTTGAAACCCTTGCCGATCGCAGATAC CTCAATTTGTTTAGTCCAACTGCAGGATGAACGAGAAGTAGCACAAACTG TCTACAGTAGCGTTGGTTCGGCAAGGATTGTTTCTGTTCGGGCAACGAGA TAATGACGTGGTCACCAAGGGGCTTGCAGTTGTATCACGGAGCACGCGCG GTCAACCGGGACGCCGTGGGTACTCTCCAGTATCCTCTCTCGATATGAAC ACAACCTTCGACTGTCCCGCTCGCTTGGTAGGGCTATCGAGAACATCATT ACAAGCGAGCCATTAACCGCCTTGGCGGCGCCATCCGTAGACGGCATCGA CGTTTGCGATGGCGCGAAGGGCACGGACAACTGCAAAGGCGAGGCGGCTC TAGTCGGTCGCTGGCAGGCCCAAGCTGAAAAGCTGTCCGCCTGTACCATT CCTCCGACGATCACCGACACAGCCTCCGATCGACCAACTGAGAGCGGGGC TGAGTGCGGTTCGGGTTTGAGCGTGGTGTCGAAGTCAACAATTGCTACAC CACTATCATCACAAAACGCATGCACTCAGTCGAAGGCGGGACTGATCTCC AACGGCGTGGAAAACGGCACCGCCATCGTGGCCGTGGCTCCCGAGTCCTT CCCGAGGTTTTCACAAGTAGGGGAAGGCGGTGATTTGACGAACGATACGG AGGGTGATGGCGCTGCTGCCGAGGATTGGTTGGATGTGACCTATGCCATG TTACGTGCACTCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig95:7558..12572+

>mRNA_Ecto-sp6_S_contig95.18559.1 ID=mRNA_Ecto-sp6_S_contig95.18559.1|Name=mRNA_Ecto-sp6_S_contig95.18559.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1728bp|location=Sequence derived from alignment at Ecto-sp6_S_contig95:7558..12572+ (Ectocarpus species6 EcLAC_371)
AGGTTCAGGGTTAGTGCATCTCCGGCGACCGGTCTCGTGGGAATGGAGGA
GAACGTCTTCCTCAGCGACTTCTTCGGCTGCGTTGGTTTTCTTCCGCTTA
CCACCCAGAGTCACATTCGCGAGACGATGGTGGAGATGATGACAGCCCCG
GCCCCTCTCCAGCAGCCAGCCATTGCGGGCATCTGGGACGAGGAAACGTG
TTTCAGTGAAATCGAACGAGGGGCGAACTGCAGGAAGGCCTCGGATGCGA
ACCAGCTTCCGATGAATCCGCAGTCTTGCACTTTCTGGTGTGCAATTGCT
CTAGGAGCAGTGGCGAAGGGCAATCCCGTCCAATCGGTGGAGAAGTACTC
TCAGCTGGCCCAAGAAGCGCTGCCAAAGAGCGTCTCGGGTCCCGCGGACG
CTGAGGTCGCGAAGGCGTGGGCAATGCTGGCCTACCTGTGCGGCTTTATG
GGGGACTTGGCAAGGTATCAAGAGTACCTGGCTGTGTCGGAGTCTTTTTT
CAGGAGTTCTGTCGAACACGGGTCCACCGGTACGCTTCCATTGGGATTCG
CGGAGGTTGTCAAGTTTACAGAGGTATCTGATTCTTGCTGCGGGCAGCGG
CAGATGAATTGGTCTAGCGGCGAACAGCAAGCGATGCCGCAGTTGAATGA
AGCTGCCACCGAGGGCGAGTTATATCGGTATGTCGCTCAATCGTTAAAAG
CTTTCGAGCAGGGCTCCCACGCAATAGCGAATGAGCAGAGAGTGAAGGCG
GGCGAGACCCCATGCGAGGACGAGCGTGATGGACGATCTAATGGAGCCCG
CCCATCCCGACGTGCCCTTCTGCCAACGGAGATTTCAAACGCTATGAGTA
CTTTGATGGGAAGTGGGGGCTGTACCGAATTCGGGCCGCTTCAAGGAGTG
ATGGATGGACCTGGTATGCGTGGTGGTGTCGGCAGCCTTCTCGTCAACAT
GAACCTTGTGTTTGAAAAGGCAGCAACGCTCGATCTCGATGCCACCCTGG
AGAGAATTGGCCGCTGCATTGAGGTTTTTGAACGGTATCCTGGCTTGTGC
CGCGGCACCATGGGGTACCACAAGGCACATATGGTGCTGGTCTGGCTCGC
AGCGATTGATGACTCCAGAGCTCGAGCGATGTACGACAGGTTGCGCGGTT
CATACAATCCATTTCGCCGTGCTGGCTCGCGGCCCGTACCCCTGTTGGAG
GAGTGGCACGGAGTGGCTACTTTTTGCGACGATTCTTATTGCAGGGCTAT
CGAGAACATCATTACAAGCGAGCCATTAACCGCCTTGGCGGCGCCATCCG
TAGACGGCATCGACGTTTGCGATGGCGCGAAGGGCACGGACAACTGCAAA
GGCGAGGCGGCTCTAGTCGGTCGCTGGCAGGCCCAAGCTGAAAAGCTGTC
CGCCTGTACCATTCCTCCGACGATCACCGACACAGCCTCCGATCGACCAA
CTGAGAGCGGGGCTGAGTGCGGTTCGGGTTTGAGCGTGGTGTCGAAGTCA
ACAATTGCTACACCACTATCATCACAAAACGCATGCACTCAGTCGAAGGC
GGGACTGATCTCCAACGGCGTGGAAAACGGCACCGCCATCGTGGCCGTGG
CTCCCGAGTCCTTCCCGAGGTTTTCACAAGTAGGGGAAGGCGGTGATTTG
ACGAACGATACGGAGGGTGATGGCGCTGCTGCCGAGGATTGGTTGGATGT
GACCTATGCCATGTTACGTGCACTCTGA
back to top