mRNA_Ecto-sp6_S_contig94.18552.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig94.18552.1
Unique NamemRNA_Ecto-sp6_S_contig94.18552.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig94.18552.1 vs. uniprot
Match: D7G2Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y0_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 8.550e-32
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 3 
Query:  108 HACRDASVSSDCGSEKCGSEGGGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRRNNG 293
            HACRDASVSSDCGSEKCGSEGGGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRR+NG
Sbjct: 1028 HACRDASVSSDCGSEKCGSEGGGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRRSNG 1089
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BLAST of mRNA_Ecto-sp6_S_contig94.18552.1 vs. uniprot
Match: A0A6H5K804_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K804_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.240e-29
Identity = 87/99 (87.88%), Postives = 88/99 (88.89%), Query Frame = 3 
Query:    3 DDSGSGMGDGGSFSXXXXXXXXXXXXXXXXXXXXX--HACRDASVSSDCGSEKCGSEGGGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRRNNG 293
            DDSGS MGDGGSFS  XXXXXXXXXXXXXXXXXXX  HACRDASVSSDCGSEK     GGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRR+ G
Sbjct: 1305 DDSGSAMGDGGSFSDAXXXXXXXXXXXXXXXXXXXXXHACRDASVSSDCGSEKXXXXSGGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRRSTG 1403
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2Y0_ECTSI8.550e-3298.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K804_9PHAE1.240e-2987.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig94contigEcto-sp6_S_contig94:629186..630214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size295
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350580.0817726-CDS-Ecto-sp6_S_contig94:629185..6294181682350580.0817726-CDS-Ecto-sp6_S_contig94:629185..629418Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 629186..629418 -
1682350580.0903783-CDS-Ecto-sp6_S_contig94:630154..6301941682350580.0903783-CDS-Ecto-sp6_S_contig94:630154..630194Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 630155..630194 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350580.0983815-UTR-Ecto-sp6_S_contig94:630194..6302141682350580.0983815-UTR-Ecto-sp6_S_contig94:630194..630214Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 630195..630214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig94.18552.1prot_Ecto-sp6_S_contig94.18552.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig94 629186..630194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig94.18552.1

>prot_Ecto-sp6_S_contig94.18552.1 ID=prot_Ecto-sp6_S_contig94.18552.1|Name=mRNA_Ecto-sp6_S_contig94.18552.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=91bp
MGDGGSFSDAGGEGNFAGGGGSSSGGGGSHACRDASVSSDCGSEKCGSEG
GGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRRNNG
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mRNA from alignment at Ecto-sp6_S_contig94:629186..630214-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig94.18552.1 ID=mRNA_Ecto-sp6_S_contig94.18552.1|Name=mRNA_Ecto-sp6_S_contig94.18552.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1029bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:629186..630214- (Ectocarpus species6 EcLAC_371)
AAGACGACAGCGGCAGCGGCATGGGTGACGGGGGCAGCTTCAGCGATGCA
GGCGGCGAAGGTGTGTGCATGCGTTCTTCCGAACGTGTGTTTTTTGGGTT
TCTCGAAAAGAGTAGTTGGCGTTTGTTGGAGCTTTGAACTGGGTTGTATG
TATGTCGTTGTCGTCGGTGGTGGTGTGGTGCTGTTGGGGTCGTGTTGACC
CGGGAGACCTCCTATGCTCAACCCGGCGGCTCTACAGTAGGGTGGCCCAC
ATCGGTACCAAAAAAAATCTATCATGAATGTGGGCATCCATCCCGTGACA
TACACGGGCCTCGGAACGAGATGGTGACGTTAAAGGGGATGGTTATGTGT
CACAGATAAATAATACCCTTGGGAACATGAAGAATTTAAGACAAGGCAAC
TCAATTCCCAGGCACAAAACACCAATAAATCCGTCTGTTGGGTGCCTTTT
TTCCAGCGCCGCCCGATAGGGTTAGGGCACGGGTTACACTGAGACGAGAA
TACAAGGACGCACCGCTAGCTCATCACCTGTGCACGGTTTCCCCCATGTG
GGCGGTAGCGGCAGCCGGCGATCGGCGAGCGGGCCGTCATGAATTGGTGT
CGACGCTGTGCACGAGATCGAGCTCAGGGGTTGGTTTGCGCCCATACGAC
GACTGCTGTACGAGATACACCGTTCCTATGCTGCACGTTGTGGAGCATGC
CTATGAGGGGCAGGTTTTTTGTCATGTCTCTCTAGCCATTCACGCGTTTG
GATGTCGTCTAAACCTGTCCCAACGCCTGTGAATGATTCTAAATAGGTAA
CTTCGCCGGCGGCGGCGGCAGCAGCAGCGGCGGCGGCGGCAGCCACGCGT
GCAGAGACGCTAGCGTGAGCAGCGACTGCGGGAGCGAGAAGTGCGGAAGC
GAGGGCGGCGGCGACCTCAAGGGGATGGCGTTCTTGCCTCCCAGCCCGAT
GGACCGAAACTCCCCCGGAGGCGGCCCGGGCCTCTCCTCGGCGGCGTGGG
ACAGCCCCAGCCCGAGACGGAATAACGGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:629186..630214-

>mRNA_Ecto-sp6_S_contig94.18552.1 ID=mRNA_Ecto-sp6_S_contig94.18552.1|Name=mRNA_Ecto-sp6_S_contig94.18552.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:629186..630214- (Ectocarpus species6 EcLAC_371)
ATGGGTGACGGGGGCAGCTTCAGCGATGCAGGCGGCGAAGGTAACTTCGC
CGGCGGCGGCGGCAGCAGCAGCGGCGGCGGCGGCAGCCACGCGTGCAGAG
ACGCTAGCGTGAGCAGCGACTGCGGGAGCGAGAAGTGCGGAAGCGAGGGC
GGCGGCGACCTCAAGGGGATGGCGTTCTTGCCTCCCAGCCCGATGGACCG
AAACTCCCCCGGAGGCGGCCCGGGCCTCTCCTCGGCGGCGTGGGACAGCC
CCAGCCCGAGACGGAATAACGGC
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