mRNA_Ecto-sp6_S_contig94.18532.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig94.18532.1 vs. uniprot
Match: A0A6H5JN30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN30_9PHAE) HSP 1 Score: 1185 bits (3066), Expect = 0.000e+0 Identity = 809/1094 (73.95%), Postives = 835/1094 (76.33%), Query Frame = 1
Query: 1 MAGDASLGITPVMKWNFERSCYRWLVTRHPAQFERLDFTAQILQSASRARKAFYECGWAEAKVLIRPSDGKFERTPFFDAIIRRGLRNSTRFDAATLTEDEIEALGMHRDETLGFKLQIRHFRSSRKELPPQGRGGGAVRKAPLAPLP------------------------PPQAQAHRH------------------------GGRPA---AAGARHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWAAWDGGNRWMPGEEGAGANADDGHRHRHAGHAGHATPPLLPGLAQAPSPAAAAGLTASRRSAAVWEGAPHGGGWVGGPADMRQQGSSWHPSGGASGAAEGRGQGYERMAHSGIGEGAGVARDAFAGDRRHQHQQPEVDVRGXXXXXXXXXLRFHPS---AVEHQQHHAGPSARTAAPRVIGGSAVPAPGFRHGAVGVDPAPAAVGGTSADPSSVAXXXG-LLSQGYRRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-VLNRPPLHHSPIGRPPLPHDYDA-VPGRETGHHKRSASSLVGAGSGGRDPAGCSPLGERAGPRHGQVSRELPSASLPGGDGPATKRRRPSVDGGDRPLAGVIQQQXXXXXX--VRGRSTSNERLTHGNGNAASWPSGASGSGTSPPPAAALVYDDVLAREFEESERELLSSRVAVDLAHARFEEASRTHHAKREQVXXXXXXXXXXXXXXXXXXXXXXXXXXXX------ATVEGGASLHSLARSSEMAAETSATTARA-------------ANDGRGSGSEDRHISDSNAAFHHRRDSPPLSRRSPAAPGRSERPSEAYSRSPSLEALGPDSASPAGKVASSPSPSAAGQAQPDCADEMMEVKLEAALLCGMGRAPVSSRQLASATAGAAVTPSPKAVSAGAEKGLEIVSLAXXXXXXXXXXXXXXXXXXXVGVPPRSSSSSPGGIRRGLSERTHSPLPSLPWKRGHHHQHQHH---RSAMGQAPGSPSACGETDSDHSSDRGCAAIEDLAGSKKQQHHELQRADVPRAVGRGGAGRLSWADYGDAGGDRRAPPLAKLTADVLV 3039
MAGDASLGITPVMKWNFERSCYRWLVTRHPAQFERLDFTAQILQSASRARKAFYECGWAEAKVLIRPSDGKFERTPFFDAIIRRGLRNSTRFDAATLTEDEIEALGMHRDETLGFKLQIRHFRSSRKELPPQGRGGGAVRKAPLAPLP PP G A AA A H XXXXXXXXXXXXXXXXXXXXXXXXERWAAWDGGNRWMPGEEG+GAN DGHR RH GHA TPPLLPGL QAPSPAAA G+TASRRSAA+WEGAPHGGGWVG PADMRQQGS WHPSGGASGA E Y+R AHSG+GEGAGVAR FAG+RR QHQQPEVDV XXXXXXXXXLRFHPS AVEH Q H GPS RTAAPRV+GGSAVPAP FRHGAVGVDP XXXG LL QGYRRLA A VLNRP L+HSPIGRP LPH+YDA V R+T HHKRSASSLVGAGS GRDPAGCSPLGE GPR GQ SRE P +SL GG PA KRRR SVD GD P GV+QQ XXXXXX VRGRSTSNERL HGNGNAASW GASG G PPPA ALV DDVLARE EESERELLSSRVAVDLA AR+EEASRTHHAKREQVXXXXXXXXXXXXXXXXXXXXXXXXXXXX AT++GGAS HSLARSSE+AAETSA ARA ANDGRGSGSE+ D++AAFHHR +S PL RRSPAA GRSERPSE+Y RSPSLEALG ASP GKV+SSPSPSAAGQAQPDCADEMMEVKLEAALLCGMGRAPVSSR+L SA AGAAVTPSPKAV+AGAEKGLEIVSLA XXXXXXXXXXXXX VGVPPRSSSSSPGGIRR LSERTHSPLPSLPWK GHH+ RSAMGQAPGSPSACGETDSDHSSDRGCAA+EDLA SKKQQHHELQ VPRAVGRGGAGRLSWADYGD GGDRRA PLAK TADVLV
Sbjct: 1 MAGDASLGITPVMKWNFERSCYRWLVTRHPAQFERLDFTAQILQSASRARKAFYECGWAEAKVLIRPSDGKFERTPFFDAIIRRGLRNSTRFDAATLTEDEIEALGMHRDETLGFKLQIRHFRSSRKELPPQGRGGGAVRKAPLAPLPXXXXXXXXXXXXXXXXXXXXRHLLPPSIAPXXXXXXXXXXXXXXXXXXXXXXXXLSWGAAEAVAVAAAAGH--PSGDLRWADEARWHHAXXXXXXXXXXXXXXXXXXXXXXXXERWAAWDGGNRWMPGEEGSGANVSDGHRLRHTGHA---TPPLLPGLVQAPSPAAA-GVTASRRSAAIWEGAPHGGGWVGDPADMRQQGSLWHPSGGASGAGEXXXXXYDRTAHSGMGEGAGVAR-VFAGNRRQQHQQPEVDV-XXXXXXXXXXLRFHPSPLSAVEHHQRH-GPSTRTAAPRVVGGSAVPAPSFRHGAVGVDPXXXXXXXXXXXXXXXXXXXGSLLFQGYRRLAAMADEQAATAAGGQLDLTGGRRRGGAHPPAPAPAAVLNRPLLNHSPIGRPLLPHEYDAAVAERDTDHHKRSASSLVGAGSSGRDPAGCSPLGETGGPRPGQASREPPFSSLAGGGDPAAKRRRSSVDEGDLPFGGVMQQXXXXXXXXXVRGRSTSNERLPHGNGNAASWTRGASGLGMPPPPATALVRDDVLARELEESERELLSSRVAVDLAQARYEEASRTHHAKREQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATLKGGASRHSLARSSEVAAETSAPNARATAGAGTGDSRHSAANDGRGSGSEEGRNGDADAAFHHR-NSLPLGRRSPAASGRSERPSESYGRSPSLEALGAGPASPVGKVSSSPSPSAAGQAQPDCADEMMEVKLEAALLCGMGRAPVSSRRLGSAAAGAAVTPSPKAVTAGAEKGLEIVSLAAXXXXXXXXXXXXXDGN--VGVPPRSSSSSPGGIRRDLSERTHSPLPSLPWK-GHHNXXXXXXXXRSAMGQAPGSPSACGETDSDHSSDRGCAAVEDLAWSKKQQHHELQGPVVPRAVGRGGAGRLSWADYGDGGGDRRALPLAKRTADVLV 1081
BLAST of mRNA_Ecto-sp6_S_contig94.18532.1 vs. uniprot
Match: D7G2W4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W4_ECTSI) HSP 1 Score: 1003 bits (2594), Expect = 0.000e+0 Identity = 678/826 (82.08%), Postives = 688/826 (83.29%), Query Frame = 1
Query: 631 ERWAAWDGGNRWMPGEEGAGANADDGHRHRHAGHAGHATPPLLPGLAQAPSPAAAAGLTASRRSAAVWEGAPHGGGWVGGPADMRQQGSSWHPSGGASGAAEGRGQGYERMAHSGIGEGAGVARDAFAGDRRHQHQQPEVDVRGXXXXXXXXXLRFHPSAVEHQQHHAGPSARTAAPRVIGGSAVPAPGFRHGAVGVDPAPAAVGGTSADPSSVAXXXGLLSQGYRRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA------VLNRPPLHHSPIGRPPLPHDYDAVPGRETGHHKRSASSLVGAGSGGRDPAGCSPLGERAGPRHGQVSRELPSASLPGGDGPATKRRRPSVDGGDRPLAGVIQQQXXXXXXVRGRSTSNERLTHGNGNAASWPSGASGSGTSPPPAAALVYDDVLAREFEESERELLSSRVAVDLAHARFEEASRTHHAKREQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXATVEGGASLHSLARSSEMAAETSATTARAANDGRGSGSEDR---------HISDSNAAFHHRRDSPPLSRRSPAAPGRSERPSEAYSRSPSLEALGPDSASPAGKVASSPSPSAAGQAQPDCADEMMEVKLEAALLCGMGRAPVSSRQLASATAGAAVTPSPKAVSAGAEKGLEIVSLAXXXXXXXXXXXXXXXXXXXVGVPPRSSSSSPGGIRRGLSERTHSPLPSLPWKRGHHHQHQHH--------RSAMGQAPGSPSACGETDSDHSSDRGCAAIEDLAGSKKQQHHELQRADVPRAVGRGGAGRLSWADYGDAGGDRRAPPLAKLTADVLV 3039
ERWAAWDGGNRWMPGEEGAGANADDGHRHRHAGHA TPPLLPGLAQAPSPAAAAGLTASRRSAAVWEGAPHGGGWVGGPAD+RQQGSSWHPSGGASGAAEGRGQGYERMAHSGIGEGAGVARDAFAGDRRHQHQQPEVDVRGXXXXXX LRFHPSAVEHQQHHAGPSARTAAPRVIGGSAV APGFRHGAV VDPAPAAVGGTSADPSSV XXXGLLSQGYRRLA XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VL+RPPLHHSPIGRPPLPH+YDAV RETGHHKRSASSLVGAGSGGRDPAG SPLGERAGPRH QVSRELP +SL GGDGPATKRRRPSVDGGDRPL GVIQQ XXXXX VRGRSTSNERLTHGNG+AASWPSGASGSGT PPAAALVYDDVLAREFEESERELLSSRVAVDLA ARFEEASRTHHAKREQV XXXXXXXXXXXXXXXXXXXXXXXXXX T++GGAS+HS ARSSE+AAETSA T RAA G G H SDS AAFHHRRDS PL RRSP PDCADEMMEVKLEAALLCGMGRAPVSSRQLASA AGAAVTPSPKAVSAGAEKGLEIVSLAXXXXXXXXXXXXXXXXX X GGIRR LSERTHSPLPSLPWK GH+H RSAMGQAPGSPSACGETDSDHSSDRGCAAIEDLAGSKKQQHHELQR VPRAVGRGGAGRLSW DYGDAGGDRRAPPLAKLTADVLV
Sbjct: 13 ERWAAWDGGNRWMPGEEGAGANADDGHRHRHAGHA---TPPLLPGLAQAPSPAAAAGLTASRRSAAVWEGAPHGGGWVGGPADIRQQGSSWHPSGGASGAAEGRGQGYERMAHSGIGEGAGVARDAFAGDRRHQHQQPEVDVRGXXXXXX---LRFHPSAVEHQQHHAGPSARTAAPRVIGGSAVSAPGFRHGAVSVDPAPAAVGGTSADPSSVXXXXGLLSQGYRRLAAMADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLHRPPLHHSPIGRPPLPHEYDAVAERETGHHKRSASSLVGAGSGGRDPAGYSPLGERAGPRHRQVSRELPFSSLAGGDGPATKRRRPSVDGGDRPLGGVIQQXXXXXX-VRGRSTSNERLTHGNGSAASWPSGASGSGTPLPPAAALVYDDVLAREFEESERELLSSRVAVDLAQARFEEASRTHHAKREQVLXXXXXXXXXXXXXXXXXXXXXXXXXXTPTLKGGASVHSPARSSEVAAETSAPTGRAAAAGGRHGXXXXXXXXXXXXXHNSDSTAAFHHRRDSAPLGRRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDCADEMMEVKLEAALLCGMGRAPVSSRQLASAAAGAAVTPSPKAVSAGAEKGLEIVSLAXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXRGGIRRDLSERTHSPLPSLPWKGGHNHXXXXXXXXXXXXXRSAMGQAPGSPSACGETDSDHSSDRGCAAIEDLAGSKKQQHHELQRPVVPRAVGRGGAGRLSWTDYGDAGGDRRAPPLAKLTADVLV 831
BLAST of mRNA_Ecto-sp6_S_contig94.18532.1 vs. uniprot
Match: A0A836CGN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN8_9STRA) HSP 1 Score: 114 bits (285), Expect = 9.920e-24 Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 1
Query: 28 TPVMKWNFERSCYRWLVTRHPAQFERLDFTAQILQSASRARKAFYECGWAEAKVLIRPSDGKFERTPFFDAIIRRGLRNSTRFDAATLTEDEIEALGMHRDETLGFKLQIRHF 366
TP+ K+N+ERS YRWL+ RHP QFE T +L+ A ARKAF+ CGW A++LIR +G++ERT FFD II RGL+ STRF LT E +AL + + G K + HF
Sbjct: 3 TPIKKYNYERSAYRWLLARHPKQFEARGVTTTVLERAPAARKAFWTCGWPGAQLLIRCVEGRYERTVFFDTIIARGLQLSTRFAYPHLTPAESDALQIRQS---GAKHYLSHF 112
BLAST of mRNA_Ecto-sp6_S_contig94.18532.1 vs. uniprot
Match: A0A835Z9J0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J0_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.470e-20 Identity = 57/136 (41.91%), Postives = 80/136 (58.82%), Query Frame = 1
Query: 13 ASLGITPVMKWNFERSCYRWLVTRHPAQFERLDFTAQILQSASRARKAFYECGWAEAKVLIRPSDGKFERTPFFDAIIRRGLRNSTRFDAATLTEDEIEALGMHRDETLGFKLQIRHFRSSRKELPP-QGRGGGAV 417
AS TP+ ++N+ERS YRWL+ RHP QFE+ T+ L+ A ARKA + W+ +K L+R +G++ERT FFD I+RGL TRF LT E + LG+ D T K+ + H+ + + P G GG V
Sbjct: 2 ASAASTPIKRYNYERSAYRWLLQRHPRQFEKEGLTSTALERAPVARKALFHTSWSGSKKLVRCVEGRYERTVFFDTFIKRGLGFGTRFAIEHLTPQERQILGICEDPT--GKVYLAHYGIAPQVEPELNGADGGGV 135
BLAST of mRNA_Ecto-sp6_S_contig94.18532.1 vs. uniprot
Match: A0A836C9L8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L8_9STRA) HSP 1 Score: 107 bits (268), Expect = 3.640e-20 Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 28 TPVMKWNFERSCYRWLVTRHPAQFERLDFTAQILQSASRARKAFYECGWAEAKVLIRP-SDGKFERTPFFDAIIRRGLRNSTRFDAATLTEDEIEALGMHRDETL 339
+P+ K+N+ERS YRWL+ RH F R T + L+SASRAR+AF++ GW A++LIR S G+ ERTP F+ II+RGL TRFD T++ E LG+ D TL
Sbjct: 336 SPIQKYNYERSTYRWLMARHADIFARCGITTKTLESASRARQAFHQSGWEGARMLIRADSQGRHERTPLFETIIKRGLSKGTRFDIDTISAREQATLGITFDSTL 440
BLAST of mRNA_Ecto-sp6_S_contig94.18532.1 vs. uniprot
Match: A0A835YVN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN4_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.370e-19 Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1
Query: 28 TPVMKWNFERSCYRWLVTRHPAQFERLDFTAQILQSASRARKAFYECGWAEAKVLIR-PSDGKFERTPFFDAIIRRGLRNST--RFDAATLTEDEIEALGMHRDE-TLGFKLQIRHFRS---------SRKELPPQGRGGGAVRKAPLAPLPPPQ 453
+P K+N+ERS YRWL+ R+ FE T + L+SA RAR+AFY GW A+ LI+ S G+ ERTPFF+AII+RG+R+ + RFD A LT E+ +LG+ R+ T F L + + S PP R G A + P LP PQ
Sbjct: 4 SPTQKYNYERSMYRWLMARNSEAFETCGITTKTLESAKRAREAFYGSGWPGARYLIQVDSSGRHERTPFFEAIIQRGIRHQSGCRFDGAALTAGELTSLGIVRNPITKDFVLDKSAYPAAAAAAGGARSVSAYPPPARHGSA--QPPXXXLPKPQ 156
BLAST of mRNA_Ecto-sp6_S_contig94.18532.1 vs. uniprot
Match: A0A6H5L3C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C0_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.340e-18 Identity = 56/122 (45.90%), Postives = 72/122 (59.02%), Query Frame = 1
Query: 31 PVMKWNFERSCYRWLVTRHPAQFERLDFTAQILQSASRARKAFYECGWAEAKVLIRP-SDGKFERTPFFDAIIRRGL-RNSTRFDAATLTEDEIEALGMHRDETLGFKLQIRHFRSSRKELP 390
P+ K+N+ERS YRWLV+RHP FE T + L+ A AR+AFY GW AKVL++ D KFERT FFD II RGL TRF + DE LG+ D G K ++ + S++ P
Sbjct: 7 PIKKYNYERSLYRWLVSRHPEPFEEHGITTKTLERAPLAREAFYRSGWLGAKVLVQNHEDNKFERTNFFDQIIERGLGHGDTRFSVEHVKSDEQSKLGITLDSATG-KYYLQAYGSAKTRRP 127 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig94.18532.1 >prot_Ecto-sp6_S_contig94.18532.1 ID=prot_Ecto-sp6_S_contig94.18532.1|Name=mRNA_Ecto-sp6_S_contig94.18532.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1014bp MAGDASLGITPVMKWNFERSCYRWLVTRHPAQFERLDFTAQILQSASRARback to top mRNA from alignment at Ecto-sp6_S_contig94:407518..416178- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig94.18532.1 ID=mRNA_Ecto-sp6_S_contig94.18532.1|Name=mRNA_Ecto-sp6_S_contig94.18532.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8661bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:407518..416178- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:407518..416178- >mRNA_Ecto-sp6_S_contig94.18532.1 ID=mRNA_Ecto-sp6_S_contig94.18532.1|Name=mRNA_Ecto-sp6_S_contig94.18532.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=3042bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:407518..416178- (Ectocarpus species6 EcLAC_371)back to top |