mRNA_Ecto-sp6_S_contig93.18492.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig93.18492.1 vs. uniprot
Match: D7FIG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG4_ECTSI) HSP 1 Score: 1157 bits (2994), Expect = 0.000e+0 Identity = 596/607 (98.19%), Postives = 602/607 (99.18%), Query Frame = 1
Query: 1 MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLEKEQRSVGVVASRPVRLRALGLDTATLKSVTLVSPAYLQVLEVVGRHRGWGASTSEVLDGVNRIIGSDKKDDYVEVVTTQTSKYRVPNKTREGAFLGSQRITAMQLYPVYDRLASTGLIFKSVVQKPATGNEEDGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKAAAALLQATRREDRGLLGEEPERLRDLEGLHEDGAGAGXXXXXXXXXXGLGDVNWSDDDELDAMVDDIGREVDEAAAAAAAKSLDKIIVDRVKFEMNPVYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTATTPQPKRWAWRGRMKTFGHGEMILLPDAKTDPESLAEYAENFYAVETAVHRESTRIKAASHF 1821
MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLEKEQRSVGVVASRPVRLRALGLDTATLKSVTLVSPAYLQVLEVVGRHRGWGAST+EVLDGVNRIIGSDKKDDYVEVVTTQTSKYRVPNKTREGAFLGSQRITAMQLYPVYDRLASTGLIFKSVVQKPAT NEE+GEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKAAAALLQATRREDRGLLGEEPERLRDLEGLH+DGAGAGXXXXXXXXXXGLGDVNWSDDDELDAMVDDIGREVDEAAAAAAAKSLDKIIVDRVKFEMNPVYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTAT PQP+RWAWRGRMKTFGHGEM+LLPDAKTDPESLAEYAENFYAVETAVHRESTRIKA +
Sbjct: 1 MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLEKEQRSVGVVASRPVRLRALGLDTATLKSVTLVSPAYLQVLEVVGRHRGWGASTAEVLDGVNRIIGSDKKDDYVEVVTTQTSKYRVPNKTREGAFLGSQRITAMQLYPVYDRLASTGLIFKSVVQKPATDNEENGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKAAAALLQATRREDRGLLGEEPERLRDLEGLHKDGAGAGXXXXXXXXXXGLGDVNWSDDDELDAMVDDIGREVDEAAAAAAAKSLDKIIVDRVKFEMNPVYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTATAPQPERWAWRGRMKTFGHGEMVLLPDAKTDPESLAEYAENFYAVETAVHRESTRIKAGERY 607
BLAST of mRNA_Ecto-sp6_S_contig93.18492.1 vs. uniprot
Match: A0A6H5JZA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA5_9PHAE) HSP 1 Score: 836 bits (2160), Expect = 5.990e-283 Identity = 485/725 (66.90%), Postives = 496/725 (68.41%), Query Frame = 1
Query: 1 MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLEKEQRSVGVVASRPVRLRALGLDTATLKSVTLVSPAYLQVLEVVGRHRGWGASTSEVLDGVNRIIGSDKKDDYVEVVTTQTSKYRVPNKTREGAFLGSQRITAMQLYPVYDRLASTGLIFKSVVQKPATGNEEDGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKAAAAL-------------------------------------LQATRRE-----------------------------------DRGLLGE----------------------EPERLRDLEGL-----------------------------------HEDGAGAGXXXXXXXXXXGLGDVNWSDDDELDAMVDDIGREVDEAAAAAAAKSLDKIIVDRVKFEMNPVYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTATTPQPKRWAWRGRMKTFGHGEMILLPDAKTDPESLAEYAENFYAVETAVHR 1788
MAMPDLQGVWETAVREVALEGSNGCTLERLWKLV+L PSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLE+EQRSVGVVASRPVRLRALGLDTATLKSVTLVSPAYLQVLE ASTGLIFKSVVQKPATGNEEDGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLK ++ L L ++R D LLG P + +G DG XXXXXXXXXX LGDVNWSDDDELDAMVDDIGREVDEAAAAAAAKSLDKI+VDR+KFEMNP+YPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTA PQPKRWAWRGRMKTFGHGEMILLPDAKTDPESLAEYAENFYAVE A R
Sbjct: 1 MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVQLHRPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRELFLATYNDQGESNNLKRGDPEDSRLAAIKDIPTLEQEQRSVGVVASRPVRLRALGLDTATLKSVTLVSPAYLQVLE-----------------------------------------------------------------------ASTGLIFKSVVQKPATGNEEDGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLEAGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKHSSELEPPALKRPYGISLARSIMGIVKSRGEDGANVEAMQQQLHCSKRPAVKIVDLLVKNPSAYGIWKGYTREGRNAKVQALFYDEELLGRGNTKRPAATITTSAPAIKTDIPTPSKASPTQGAATPVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADGXXXXXXXXXXXXXXXLGDVNWSDDDELDAMVDDIGREVDEAAAAAAAKSLDKIVVDRLKFEMNPMYPPEGCSMAERLAWLQMTPKDRRKSFVLHELGLCKSIPVLKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTAIAPQPKRWAWRGRMKTFGHGEMILLPDAKTDPESLAEYAENFYAVEAAGER 654
BLAST of mRNA_Ecto-sp6_S_contig93.18492.1 vs. uniprot
Match: A0A7S3VKM4_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VKM4_DUNTE) HSP 1 Score: 57.4 bits (137), Expect = 8.420e-5 Identity = 49/178 (27.53%), Postives = 77/178 (43.26%), Query Frame = 1
Query: 37 AVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQQPGEEQPDDDGSDPREFVKAWLWRSIVSRRGRE--LFLATYNDQGESNNLKRGDPEDSRLAA--------IKDIPTL-EKEQRSVGVVASRPVRLRALGLDTATLKSVTLVSPAYLQVLEVVGRHRGWGASTSEVLDGVN 537
AV EVA+EGS+GC++ LW+L+E P G + + VK ++W S++ +R + L+L + E +G +DS+ A + +P + E+R V + AS R LGL A L P + LE + R R GA S + +N
Sbjct: 8 AVEEVAVEGSSGCSVSELWRLLEAKLPLPSGHVTAL----------------TDTVKQYIWVSLLQQRPLDILLYLPSGTSPHEPRPATKGKKKDSQQAQEELQETCPFESVPHYKDAEERGVRIKASTLARNNVLGLYDAHTSRFQLSGPQ-IMTLETIARARHLGALQSNLASKMN 168 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig93.18492.1 >prot_Ecto-sp6_S_contig93.18492.1 ID=prot_Ecto-sp6_S_contig93.18492.1|Name=mRNA_Ecto-sp6_S_contig93.18492.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=611bp MAMPDLQGVWETAVREVALEGSNGCTLERLWKLVELDTPSQQGGSGSTPQback to top mRNA from alignment at Ecto-sp6_S_contig93:557417..567689+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig93.18492.1 ID=mRNA_Ecto-sp6_S_contig93.18492.1|Name=mRNA_Ecto-sp6_S_contig93.18492.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=10273bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:557417..567689+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig93:557417..567689+ >mRNA_Ecto-sp6_S_contig93.18492.1 ID=mRNA_Ecto-sp6_S_contig93.18492.1|Name=mRNA_Ecto-sp6_S_contig93.18492.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1833bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:557417..567689+ (Ectocarpus species6 EcLAC_371)back to top |